Wall clock time and date at job start Sat Apr 11 2020 02:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00220 * 2 1 4 4 H 1.48505 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46958 * 299.99743 * 3 2 1 6 6 H 1.48499 * 109.47373 * 59.99973 * 3 2 1 7 7 C 1.38805 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99877 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00122 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99882 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47119 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99665 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00310 * 180.02562 * 11 10 9 14 14 C 1.46931 * 120.62879 * 359.97438 * 13 11 10 15 15 C 1.53190 * 108.77279 * 233.61222 * 14 13 11 16 16 C 1.53038 * 109.31346 * 305.36250 * 15 14 13 17 17 H 1.09008 * 109.45078 * 301.35225 * 16 15 14 18 18 N 1.46504 * 109.46438 * 181.38630 * 16 15 14 19 19 C 1.34779 * 119.99659 * 84.92654 * 18 16 15 20 20 O 1.21345 * 120.00094 * 0.02562 * 19 18 16 21 21 C 1.49451 * 119.99801 * 179.97438 * 19 18 16 22 22 N 1.34779 * 119.99801 * 179.97438 * 21 19 18 23 23 O 1.21345 * 120.00105 * 0.02562 * 21 19 18 24 24 C 1.53041 * 109.53793 * 61.36689 * 16 15 14 25 25 H 1.08995 * 109.49789 * 58.61851 * 24 16 15 26 26 O 1.42905 * 109.49708 * 178.68665 * 24 16 15 27 27 C 1.46935 * 120.60755 * 180.02562 * 13 11 10 28 28 H 0.97003 * 119.99900 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47051 * 59.99734 * 10 9 7 30 30 H 1.09000 * 109.47299 * 300.00251 * 10 9 7 31 31 H 1.08993 * 109.59154 * 113.82461 * 14 13 11 32 32 H 1.09000 * 109.58506 * 353.39354 * 14 13 11 33 33 H 1.09005 * 109.49773 * 185.41234 * 15 14 13 34 34 H 1.08997 * 109.50247 * 65.31212 * 15 14 13 35 35 H 0.96991 * 120.00333 * 264.93302 * 18 16 15 36 36 H 0.96991 * 120.00008 * 0.02562 * 22 21 19 37 37 H 0.97004 * 119.99197 * 180.02562 * 22 21 19 38 38 H 0.96696 * 114.00036 * 179.97438 * 26 24 16 39 39 H 1.08996 * 109.61589 * 6.61514 * 27 13 11 40 40 H 1.09005 * 109.55885 * 246.19142 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8915 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7908 -5.5023 0.0000 13 7 2.8438 -6.3432 0.0003 14 6 4.2956 -6.1175 0.0008 15 6 4.9154 -6.8921 -1.1665 16 6 4.5082 -8.3641 -1.0701 17 1 4.8438 -8.7719 -0.1165 18 7 5.1261 -9.1144 -2.1663 19 6 6.3822 -9.5856 -2.0363 20 8 7.0010 -9.3888 -1.0112 21 6 7.0124 -10.3514 -3.1543 22 7 8.2686 -10.8222 -3.0245 23 8 6.3934 -10.5486 -4.1792 24 6 2.9853 -8.4813 -1.1670 25 1 2.6467 -8.0517 -2.1097 26 8 2.6082 -9.8584 -1.1076 27 6 2.3430 -7.7246 -0.0009 28 1 -0.4850 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8905 30 1 3.1243 -3.7315 -0.8894 31 1 4.7201 -6.4711 0.9403 32 1 4.5000 -5.0533 -0.1174 33 1 6.0015 -6.8113 -1.1209 34 1 4.5585 -6.4769 -2.1090 35 1 4.6314 -9.2719 -2.9855 36 1 8.7634 -10.6642 -2.2054 37 1 8.6777 -11.3189 -3.7504 38 1 1.6545 -10.0078 -1.1633 39 1 1.2596 -7.7210 -0.1203 40 1 2.6075 -8.2094 0.9389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001740124607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:46:29 Heat of formation + Delta-G solvation = -151.716052 kcal Electronic energy + Delta-G solvation = -25902.508331 eV Core-core repulsion = 21843.709509 eV Total energy + Delta-G solvation = -4058.798822 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.13939 -40.16317 -38.84397 -37.94109 -36.06026 -35.16016 -33.94883 -32.46851 -31.46697 -30.95934 -28.71256 -26.26270 -25.50620 -24.11010 -23.52346 -21.33893 -20.79554 -19.54718 -18.86383 -17.94775 -17.77093 -17.42028 -16.86838 -16.57260 -16.17586 -16.01006 -15.75938 -15.40008 -14.83982 -14.70346 -14.37630 -14.27497 -14.08689 -13.75272 -13.36776 -13.33019 -13.10386 -12.64734 -12.42996 -12.10391 -12.07072 -11.95118 -11.66257 -11.10022 -11.05833 -11.02291 -10.78141 -10.59510 -10.35951 -10.09940 -9.84728 -9.61633 -9.49233 -9.11219 -8.71436 -8.27902 -6.55302 -6.25714 -3.96778 1.01736 2.05332 2.73990 2.81914 2.91091 3.19144 3.21511 3.28195 3.40842 3.49271 3.67120 4.14726 4.16523 4.29378 4.50050 4.59344 4.71760 4.84180 4.89586 5.04751 5.09822 5.26497 5.37431 5.44231 5.51165 5.54963 5.70761 5.76136 5.80875 5.88886 6.02316 6.04450 6.40042 6.44948 6.88922 7.20334 7.36662 7.38139 7.56204 7.59896 8.31425 8.40779 9.19929 10.81748 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.019433 B = 0.002435 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.492983 B =11494.733593 C =12436.900547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.537 3.463 12 O -0.514 6.514 13 N -0.620 5.620 14 C 0.110 3.890 15 C -0.146 4.146 16 C 0.154 3.846 17 H 0.102 0.898 18 N -0.684 5.684 19 C 0.508 3.492 20 O -0.520 6.520 21 C 0.514 3.486 22 N -0.823 5.823 23 O -0.521 6.521 24 C 0.085 3.915 25 H 0.070 0.930 26 O -0.558 6.558 27 C 0.087 3.913 28 H 0.268 0.732 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.414 0.586 36 H 0.414 0.586 37 H 0.411 0.589 38 H 0.386 0.614 39 H 0.102 0.898 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.860 -21.344 -3.773 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.326 3.674 12 O -0.388 6.388 13 N -0.358 5.358 14 C -0.014 4.014 15 C -0.185 4.185 16 C 0.049 3.951 17 H 0.120 0.880 18 N -0.336 5.336 19 C 0.288 3.712 20 O -0.396 6.396 21 C 0.293 3.707 22 N -0.389 5.389 23 O -0.396 6.396 24 C 0.024 3.976 25 H 0.088 0.912 26 O -0.364 6.364 27 C -0.037 4.037 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.251 0.749 36 H 0.245 0.755 37 H 0.243 0.757 38 H 0.234 0.766 39 H 0.121 0.879 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 13.436 -21.507 -3.569 25.609 hybrid contribution 1.651 1.117 -0.367 2.027 sum 15.087 -20.389 -3.936 25.668 Atomic orbital electron populations 1.70023 1.05963 1.27402 1.46845 1.25000 0.95037 0.99074 0.94496 0.86110 0.79585 0.81836 0.77925 1.19591 1.20564 1.20544 1.22888 0.94911 0.91525 1.58968 0.90843 1.85418 1.04860 0.96442 1.96714 1.23566 1.06638 0.95112 1.04886 1.20397 0.86147 0.86212 0.74693 1.90700 1.15147 1.85163 1.47753 1.48089 1.06533 1.05236 1.75918 1.21739 0.79565 1.01989 0.98089 1.22373 1.02334 0.93408 1.00398 1.21126 0.90574 0.91781 0.91581 0.87976 1.45690 1.14165 1.53751 1.19990 1.20018 0.82952 0.80518 0.87695 1.90778 1.62242 1.57380 1.29234 1.20141 0.82908 0.80052 0.87597 1.43526 1.15267 1.57370 1.22744 1.90833 1.62346 1.56857 1.29542 1.22399 0.93550 0.82747 0.98861 0.91203 1.86526 1.29456 1.23420 1.96959 1.22168 1.01366 0.81944 0.98225 0.92201 0.89043 0.89106 0.90688 0.88208 0.89120 0.90339 0.74917 0.75508 0.75660 0.76598 0.87935 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.76 13.22 55.49 0.73 -25.02 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.87 9.50 30.94 0.29 -14.58 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.91 4.50 36.01 0.16 -2.75 16 11 C 0.54 9.51 7.72 -10.99 -0.08 9.42 16 12 O -0.51 -11.02 15.27 5.55 0.08 -10.94 16 13 N -0.62 -7.89 2.97 -172.79 -0.51 -8.40 16 14 C 0.11 1.09 6.34 -3.71 -0.02 1.06 16 15 C -0.15 -1.28 5.65 -26.61 -0.15 -1.43 16 16 C 0.15 1.39 2.12 -67.89 -0.14 1.25 16 17 H 0.10 1.04 7.58 -51.92 -0.39 0.64 16 18 N -0.68 -6.11 4.91 -54.19 -0.27 -6.37 16 19 C 0.51 4.88 7.85 -11.58 -0.09 4.79 16 20 O -0.52 -5.83 16.14 5.50 0.09 -5.74 16 21 C 0.51 4.49 8.16 -11.58 -0.09 4.40 16 22 N -0.82 -4.18 8.87 30.90 0.27 -3.90 16 23 O -0.52 -5.92 17.31 5.50 0.10 -5.82 16 24 C 0.09 0.75 3.14 -26.64 -0.08 0.67 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 O -0.56 -4.62 13.16 -35.23 -0.46 -5.08 16 27 C 0.09 0.92 6.05 -3.73 -0.02 0.90 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.09 1.62 7.94 -51.91 -0.41 1.21 16 30 H 0.09 1.60 7.69 -51.92 -0.40 1.20 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 1.00 5.93 -51.93 -0.31 0.69 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.41 3.49 8.07 -40.82 -0.33 3.16 16 36 H 0.41 1.57 8.30 -40.82 -0.34 1.23 16 37 H 0.41 1.29 8.93 -40.82 -0.36 0.92 16 38 H 0.39 1.82 9.08 45.56 0.41 2.24 16 39 H 0.10 1.21 7.01 -51.93 -0.36 0.84 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -37.04 357.20 -6.31 -43.35 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -4.15 Total: 4.64 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -0.33 Total: 5.70 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.23 Total: -43.70 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.19 Total: -27.58 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.04 -6.31 -43.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740124607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.370 kcal (2) G-P(sol) polarization free energy of solvation -37.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds