Wall clock time and date at job start Sat Apr 11 2020 02:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99957 * 2 1 4 4 H 1.48504 * 109.46968 * 239.99726 * 3 2 1 5 5 H 1.48497 * 109.46772 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47104 * 119.99982 * 3 2 1 7 7 C 1.38813 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00322 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00065 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64562 * 14.73324 * 9 7 2 11 11 C 1.54912 * 104.83233 * 155.89375 * 10 9 7 12 12 C 1.55155 * 101.58098 * 37.00999 * 11 10 9 13 13 C 1.47018 * 125.65281 * 194.76101 * 9 7 2 14 14 H 1.09002 * 110.00908 * 300.52443 * 13 9 7 15 15 C 1.52999 * 109.88170 * 61.61631 * 13 9 7 16 16 N 1.46509 * 109.47184 * 182.40206 * 15 13 9 17 17 C 1.34774 * 120.00029 * 185.13872 * 16 15 13 18 18 O 1.21579 * 120.00118 * 359.97438 * 17 16 15 19 19 C 1.47663 * 119.99803 * 179.97438 * 17 16 15 20 20 C 1.40159 * 119.85475 * 359.97438 * 19 17 16 21 21 C 1.36216 * 120.07417 * 179.97438 * 20 19 17 22 22 C 1.39583 * 120.43997 * 0.02562 * 21 20 19 23 23 S 1.76145 * 131.53526 * 179.97438 * 22 21 20 24 24 C 1.70632 * 90.85721 * 179.97438 * 23 22 21 25 25 N 1.27852 * 111.58590 * 359.97438 * 24 23 22 26 26 C 1.34748 * 117.84157 * 0.02562 * 25 24 23 27 27 C 1.38718 * 119.85052 * 179.97438 * 19 17 16 28 28 H 0.96990 * 119.99937 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.37079 * 37.05417 * 10 9 7 30 30 H 1.09006 * 110.46299 * 274.78025 * 10 9 7 31 31 H 1.08990 * 111.00399 * 278.93422 * 11 10 9 32 32 H 1.09000 * 111.00248 * 155.08205 * 11 10 9 33 33 H 1.08998 * 110.71980 * 206.13559 * 12 11 10 34 34 H 1.09006 * 110.72437 * 82.86017 * 12 11 10 35 35 H 1.09005 * 109.47085 * 62.40386 * 15 13 9 36 36 H 1.09000 * 109.47260 * 302.40140 * 15 13 9 37 37 H 0.97000 * 119.99679 * 5.12954 * 16 15 13 38 38 H 1.08003 * 119.96099 * 0.25513 * 20 19 17 39 39 H 1.08010 * 119.77815 * 180.02562 * 21 20 19 40 40 H 1.07997 * 124.20745 * 180.02562 * 24 23 22 41 41 H 1.08001 * 119.98132 * 0.02562 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1072 -2.5530 -0.3047 11 6 -0.2459 -4.0223 -0.7753 12 6 0.7641 -4.7442 0.1555 13 6 1.8976 -3.7077 0.3054 14 1 2.7029 -3.9356 -0.3929 15 6 2.4319 -3.7246 1.7390 16 7 3.0507 -5.0238 2.0143 17 6 3.5004 -5.3071 3.2528 18 8 3.3930 -4.4844 4.1415 19 6 4.1235 -6.6167 3.5303 20 6 4.2453 -7.5631 2.5036 21 6 4.8198 -8.7723 2.7545 22 6 5.2908 -9.0801 4.0320 23 16 6.0680 -10.5247 4.6737 24 6 6.1821 -9.8084 6.2181 25 7 5.6906 -8.6282 6.2267 26 6 5.1813 -8.1502 5.0744 27 6 4.5858 -6.9049 4.8060 28 1 -0.4849 0.8400 0.0004 29 1 -0.4068 -1.8701 -1.0997 30 1 -0.7091 -2.3821 0.5880 31 1 0.0431 -4.1266 -1.8210 32 1 -1.2589 -4.3906 -0.6129 33 1 1.1350 -5.6565 -0.3117 34 1 0.3101 -4.9617 1.1223 35 1 1.6096 -3.5590 2.4352 36 1 3.1744 -2.9358 1.8594 37 1 3.1365 -5.6800 1.3051 38 1 3.8872 -7.3314 1.5113 39 1 4.9116 -9.4979 1.9597 40 1 6.6163 -10.2916 7.0809 41 1 4.4891 -6.1721 5.5935 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028237338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:45:11 Heat of formation + Delta-G solvation = 49.918586 kcal Electronic energy + Delta-G solvation = -24852.572429 eV Core-core repulsion = 21245.659155 eV Total energy + Delta-G solvation = -3606.913274 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89447 -39.48075 -37.72474 -36.84233 -34.39874 -32.51500 -31.56765 -30.64664 -29.58410 -28.57059 -25.60773 -25.13597 -24.36540 -23.04563 -22.41667 -20.48978 -20.08910 -19.60939 -18.98993 -17.49858 -16.71309 -16.64932 -16.46448 -15.59787 -15.31270 -14.93266 -14.75942 -14.61994 -14.26226 -14.18584 -13.86664 -13.62388 -13.22592 -13.14400 -12.42316 -12.22025 -12.09255 -11.90596 -11.76060 -11.40826 -11.33658 -10.96472 -10.78636 -10.49193 -10.28355 -10.15560 -10.08180 -10.02738 -9.88484 -9.80310 -9.69601 -9.18886 -8.75627 -8.60292 -8.49520 -6.86574 -5.78721 -3.15716 -0.00764 0.45836 0.81636 1.27586 1.87995 2.78501 3.16967 3.40153 3.44963 3.45790 3.60243 3.69721 4.17723 4.46019 4.57619 4.60512 4.74453 4.85609 5.06159 5.30705 5.36651 5.44703 5.51087 5.59653 5.68297 5.71259 5.77713 5.87978 6.01832 6.08723 6.18721 6.20830 6.42487 6.51235 6.56355 6.65308 6.77030 7.01503 7.15552 7.48854 7.58678 7.67547 7.77053 8.23151 8.34921 9.15252 9.75807 10.42822 11.33220 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.022845 B = 0.002359 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.331190 B =11865.388044 C =12632.473555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.108 3.892 16 N -0.714 5.714 17 C 0.551 3.449 18 O -0.533 6.533 19 C -0.114 4.114 20 C -0.070 4.070 21 C -0.077 4.077 22 C -0.164 4.164 23 S 0.099 5.901 24 C 0.065 3.935 25 N -0.457 5.457 26 C 0.068 3.932 27 C 0.001 3.999 28 H 0.255 0.745 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.395 0.605 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.206 0.794 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.606 -24.017 5.019 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.365 4.365 8 H 0.093 0.907 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.017 4.017 16 N -0.365 5.365 17 C 0.337 3.663 18 O -0.411 6.411 19 C -0.120 4.120 20 C -0.092 4.092 21 C -0.100 4.100 22 C -0.284 4.284 23 S 0.353 5.647 24 C -0.241 4.241 25 N -0.168 5.168 26 C -0.051 4.051 27 C -0.020 4.020 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.229 0.771 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.222 0.778 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.769 -23.803 5.816 26.379 hybrid contribution 0.206 1.300 -0.211 1.333 sum 9.975 -22.504 5.605 25.246 Atomic orbital electron populations 1.69922 1.05036 1.25501 1.55618 1.24922 0.95679 0.97901 1.01251 0.86226 0.78614 0.83040 0.78055 1.21057 1.21545 1.20893 1.18934 0.90370 0.82161 1.44998 0.90676 1.44470 1.06446 1.00990 1.79286 1.21457 0.84782 0.90152 0.98885 1.23004 0.97574 0.99625 0.98524 1.22618 0.97162 0.96934 0.99777 1.21136 0.94551 0.88216 0.91798 0.94463 1.22334 0.97666 0.82275 0.99415 1.46058 1.60668 1.19363 1.10427 1.18030 0.78887 0.86158 0.83252 1.90820 1.56513 1.48816 1.44904 1.19892 1.02571 0.95556 0.94026 1.21037 0.96795 0.92339 0.99027 1.19978 0.98731 0.97541 0.93724 1.24082 1.06424 0.98015 0.99847 1.84030 1.58544 1.16229 1.05927 1.28126 1.00906 0.93341 1.01724 1.66209 1.11371 1.12623 1.26632 1.19105 1.02770 0.96172 0.87056 1.20796 0.91549 0.93138 0.96545 0.93503 0.90976 0.95548 0.92287 0.92321 0.92413 0.91757 0.91278 0.91226 0.77051 0.84082 0.84443 0.77783 0.83119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.43 10.58 55.49 0.59 -25.84 16 2 C 0.00 0.00 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.39 9.76 -15.06 -0.15 -6.53 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.56 16 9 N -0.59 -14.29 3.13 -162.57 -0.51 -14.80 16 10 C 0.17 4.02 5.41 -2.53 -0.01 4.01 16 11 C -0.15 -2.64 7.09 -24.58 -0.17 -2.81 16 12 C -0.13 -2.02 6.10 -24.90 -0.15 -2.17 16 13 C 0.15 2.88 3.22 -66.96 -0.22 2.66 16 14 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 15 C 0.11 2.02 5.07 -4.04 -0.02 2.00 16 16 N -0.71 -10.31 5.28 -61.30 -0.32 -10.63 16 17 C 0.55 8.63 7.76 -12.41 -0.10 8.53 16 18 O -0.53 -10.65 16.30 5.30 0.09 -10.56 16 19 C -0.11 -1.41 5.86 -105.15 -0.62 -2.03 16 20 C -0.07 -0.63 9.47 -39.59 -0.37 -1.01 16 21 C -0.08 -0.64 9.99 -39.81 -0.40 -1.04 16 22 C -0.16 -1.61 6.56 -38.37 -0.25 -1.86 16 23 S 0.10 0.69 23.17 -107.50 -2.49 -1.80 16 24 C 0.06 0.49 12.10 51.11 0.62 1.11 16 25 N -0.46 -5.20 10.57 -13.02 -0.14 -5.34 16 26 C 0.07 0.82 6.99 -84.98 -0.59 0.23 16 27 C 0.00 0.02 9.65 -38.51 -0.37 -0.35 16 28 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.07 1.88 6.94 -51.93 -0.36 1.52 16 30 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 1.02 7.81 -51.93 -0.41 0.62 16 35 H 0.07 1.46 8.08 -51.93 -0.42 1.04 16 36 H 0.07 1.49 7.92 -51.93 -0.41 1.07 16 37 H 0.39 4.30 6.33 -40.82 -0.26 4.04 16 38 H 0.14 0.90 6.37 -52.48 -0.33 0.57 16 39 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.21 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.15 2.07 7.60 -52.49 -0.40 1.67 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -33.45 354.31 -10.46 -43.91 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.09 Total: 2.13 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.90 Total: 0.64 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.38 Total: -56.61 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.49 Total: -1.80 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.45 -10.46 -43.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028237338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.831 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds