Wall clock time and date at job start Sat Apr 11 2020 02:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48503 * 109.47311 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47271 * 300.00620 * 3 2 1 6 6 H 1.48501 * 109.46665 * 60.00215 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21611 * 120.00239 * 359.97438 * 16 15 14 18 18 C 1.47400 * 120.00097 * 179.97438 * 16 15 14 19 19 C 1.38876 * 120.01480 * 359.72798 * 18 16 15 20 20 C 1.38231 * 120.45657 * 179.69350 * 19 18 16 21 21 C 1.37957 * 120.27863 * 0.60285 * 20 19 18 22 22 C 1.39191 * 120.44815 * 359.67823 * 21 20 19 23 23 S 1.76144 * 131.63681 * 180.02562 * 22 21 20 24 24 C 1.70676 * 90.71293 * 179.97438 * 23 22 21 25 25 N 1.28150 * 111.37636 * 359.97438 * 24 23 22 26 26 C 1.33642 * 118.02627 * 0.02562 * 25 24 23 27 27 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 28 28 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 30 30 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 31 31 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 32 32 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 33 33 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 34 34 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 35 35 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 36 36 H 1.07995 * 119.77019 * 359.97438 * 19 18 16 37 37 H 1.08005 * 119.86391 * 180.30117 * 20 19 18 38 38 H 1.08001 * 119.78037 * 179.69794 * 21 20 19 39 39 H 1.08001 * 124.31057 * 180.02562 * 24 23 22 40 40 H 1.09002 * 110.36518 * 322.70049 * 27 9 7 41 41 H 1.08995 * 110.36673 * 84.91158 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9596 -8.5959 0.3058 18 6 3.9147 -8.4367 -0.9577 19 6 4.7103 -7.6431 -1.7737 20 6 5.8932 -8.1359 -2.2921 21 6 6.2899 -9.4276 -2.0138 22 6 5.5085 -10.2464 -1.2036 23 16 5.7253 -11.9092 -0.6644 24 6 4.2596 -11.8401 0.2074 25 7 3.6991 -10.6938 0.0886 26 6 4.3101 -9.7705 -0.6599 27 6 1.9333 -3.7312 -0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5503 -2.0832 0.9095 30 1 -0.5617 -2.0533 -0.8759 31 1 -1.3017 -4.2523 -0.6628 32 1 -0.6290 -4.4190 0.9906 33 1 1.0780 -6.1265 0.9518 34 1 0.1986 -6.7069 -0.4828 35 1 2.8421 -6.0795 -1.2533 36 1 4.4051 -6.6325 -2.0010 37 1 6.5071 -7.5087 -2.9217 38 1 7.2132 -9.8060 -2.4271 39 1 3.8564 -12.6579 0.7861 40 1 2.8303 -3.7416 -0.6198 41 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028535839.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:45:29 Heat of formation + Delta-G solvation = 55.309494 kcal Electronic energy + Delta-G solvation = -24825.107994 eV Core-core repulsion = 21218.428487 eV Total energy + Delta-G solvation = -3606.679506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.110 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99503 -39.25569 -37.59570 -37.12491 -34.61546 -32.65355 -31.67003 -30.25740 -29.71424 -28.23523 -25.82108 -25.23050 -24.40731 -23.29578 -21.72811 -20.94142 -19.99284 -19.91327 -18.79095 -17.37297 -16.78196 -16.68418 -16.29046 -15.59024 -15.48964 -15.31939 -14.96875 -14.65929 -14.36885 -14.02580 -13.80788 -13.48769 -13.05238 -12.96056 -12.44677 -12.34453 -12.24816 -11.98265 -11.74063 -11.59222 -11.36301 -10.90409 -10.81934 -10.45929 -10.40656 -10.15257 -10.02927 -9.92519 -9.86016 -9.66864 -9.58954 -9.14238 -8.94869 -8.61110 -8.46971 -6.83820 -5.72124 -3.05671 -0.12310 0.48245 0.88530 1.33564 2.05787 2.70755 3.15400 3.38745 3.43983 3.46697 3.58664 3.66566 4.21757 4.45978 4.48349 4.59483 4.76908 4.80982 5.02629 5.14778 5.24787 5.30490 5.42642 5.54105 5.61452 5.67675 5.71665 5.83116 5.90461 6.06850 6.07707 6.16435 6.34872 6.46068 6.48682 6.54326 6.68821 6.91283 7.33689 7.55440 7.56342 7.63526 7.82474 8.25342 8.27789 9.21344 9.81809 10.47953 11.39704 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.022501 B = 0.002328 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.084515 B =12024.688991 C =12974.607598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.135 3.865 15 N -0.721 5.721 16 C 0.548 3.452 17 O -0.510 6.510 18 C -0.076 4.076 19 C -0.070 4.070 20 C -0.107 4.107 21 C -0.049 4.049 22 C -0.191 4.191 23 S 0.089 5.911 24 C 0.071 3.929 25 N -0.437 5.437 26 C 0.129 3.871 27 C 0.142 3.858 28 H 0.252 0.748 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.399 0.601 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.206 0.794 40 H 0.034 0.966 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.100 -23.314 -5.485 26.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.011 3.989 15 N -0.374 5.374 16 C 0.334 3.666 17 O -0.385 6.385 18 C -0.083 4.083 19 C -0.091 4.091 20 C -0.129 4.129 21 C -0.071 4.071 22 C -0.310 4.310 23 S 0.343 5.657 24 C -0.233 4.233 25 N -0.147 5.147 26 C 0.006 3.994 27 C 0.016 3.984 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.235 0.765 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.222 0.778 40 H 0.053 0.947 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.696 -24.328 -4.754 27.409 hybrid contribution 0.380 1.965 -0.350 2.032 sum 12.076 -22.363 -5.105 25.923 Atomic orbital electron populations 1.69978 1.04886 1.24907 1.57134 1.24813 0.95732 0.97698 1.02310 0.86048 0.78682 0.83800 0.77245 1.20526 1.21770 1.21758 1.19096 0.90424 0.82428 1.43683 0.90441 1.44495 1.01759 0.99859 1.87174 1.21150 0.84304 0.88180 1.01118 1.22859 0.95431 0.99349 0.99724 1.22622 0.98664 0.91979 1.00513 0.90181 1.21409 0.84934 0.93708 0.98833 1.45999 1.25376 1.13389 1.52640 1.17949 0.85191 0.81981 0.81498 1.90854 1.53526 1.57933 1.36222 1.19670 0.96640 0.91522 1.00437 1.21336 0.93771 0.99640 0.94396 1.21110 0.96571 0.95013 1.00163 1.20505 0.98428 0.92943 0.95251 1.23897 1.00986 0.98912 1.07214 1.83992 1.25813 1.07946 1.47976 1.28440 0.95119 0.98423 1.01338 1.65957 1.32077 1.00283 1.16375 1.18766 0.90742 0.94025 0.95905 1.21569 0.93891 0.86170 0.96801 0.93800 0.93914 0.93509 0.91959 0.92169 0.91223 0.91539 0.76548 0.83948 0.83772 0.84660 0.77775 0.94736 0.96271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.04 10.31 55.49 0.57 -26.47 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.61 -15.29 3.39 -170.05 -0.58 -15.87 16 10 C 0.18 4.27 5.37 -3.06 -0.02 4.25 16 11 C -0.13 -2.46 6.42 -24.90 -0.16 -2.62 16 12 C -0.12 -1.95 3.11 -88.46 -0.27 -2.22 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C 0.13 1.99 5.12 -4.05 -0.02 1.97 16 15 N -0.72 -9.65 5.35 -61.39 -0.33 -9.97 16 16 C 0.55 8.33 7.76 -12.53 -0.10 8.23 16 17 O -0.51 -9.66 15.78 5.27 0.08 -9.58 16 18 C -0.08 -0.98 5.92 -104.38 -0.62 -1.59 16 19 C -0.07 -0.64 9.50 -39.35 -0.37 -1.01 16 20 C -0.11 -0.77 10.02 -39.69 -0.40 -1.16 16 21 C -0.05 -0.37 10.05 -39.33 -0.40 -0.77 16 22 C -0.19 -1.93 6.55 -38.59 -0.25 -2.19 16 23 S 0.09 0.69 23.18 -107.50 -2.49 -1.80 16 24 C 0.07 0.66 12.12 51.23 0.62 1.29 16 25 N -0.44 -6.02 9.43 -12.74 -0.12 -6.14 16 26 C 0.13 1.70 6.73 -84.89 -0.57 1.12 16 27 C 0.14 2.81 6.41 -2.52 -0.02 2.80 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 30 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 33 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 4.40 6.33 -40.82 -0.26 4.14 16 36 H 0.14 0.99 6.34 -52.49 -0.33 0.66 16 37 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -35.68 353.74 -10.50 -46.18 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.12 Total: 0.10 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -2.82 Total: 1.28 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.45 Total: -58.46 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.49 Total: -1.80 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.68 -10.50 -46.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028535839.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.489 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds