Wall clock time and date at job start Sat Apr 11 2020 02:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00117 * 2 1 4 4 H 1.48499 * 109.47146 * 239.99832 * 3 2 1 5 5 H 1.48497 * 109.47039 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46709 * 120.00058 * 3 2 1 7 7 C 1.38815 * 119.99322 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99251 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00463 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64630 * 359.97438 * 9 7 2 11 11 C 1.54908 * 104.83020 * 155.90671 * 10 9 7 12 12 C 1.55161 * 101.58345 * 37.00768 * 11 10 9 13 13 H 1.09003 * 110.71736 * 83.03798 * 12 11 10 14 14 C 1.52998 * 110.72045 * 206.13693 * 12 11 10 15 15 N 1.46503 * 109.46754 * 182.56085 * 14 12 11 16 16 C 1.34779 * 119.99669 * 180.02562 * 15 14 12 17 17 O 1.21612 * 120.00010 * 359.97438 * 16 15 14 18 18 C 1.47393 * 120.00048 * 180.02562 * 16 15 14 19 19 C 1.38874 * 120.01727 * 0.02562 * 18 16 15 20 20 C 1.38232 * 120.45888 * 180.02562 * 19 18 16 21 21 C 1.37950 * 120.27934 * 359.90382 * 20 19 18 22 22 C 1.39195 * 120.44772 * 0.05931 * 21 20 19 23 23 S 1.76144 * 131.63526 * 179.97438 * 22 21 20 24 24 C 1.70683 * 90.71278 * 180.02562 * 23 22 21 25 25 N 1.28155 * 111.37551 * 359.97438 * 24 23 22 26 26 C 1.33644 * 118.01858 * 0.02562 * 25 24 23 27 27 C 1.47319 * 125.61276 * 180.19747 * 9 7 2 28 28 H 0.97005 * 120.00033 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.36869 * 37.06782 * 10 9 7 30 30 H 1.09002 * 110.45620 * 274.79045 * 10 9 7 31 31 H 1.08999 * 111.00289 * 278.93870 * 11 10 9 32 32 H 1.09002 * 111.03732 * 155.09814 * 11 10 9 33 33 H 1.08998 * 109.47219 * 62.56041 * 14 12 11 34 34 H 1.09003 * 109.47180 * 302.55477 * 14 12 11 35 35 H 0.96998 * 120.00669 * 359.97438 * 15 14 12 36 36 H 1.08001 * 119.76992 * 359.97438 * 19 18 16 37 37 H 1.08002 * 119.85848 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.77711 * 180.34212 * 21 20 19 39 39 H 1.07992 * 124.31267 * 180.02562 * 24 23 22 40 40 H 1.08996 * 110.06782 * 61.68583 * 27 9 7 41 41 H 1.08998 * 109.85128 * 300.42018 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6962 1.2126 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1417 -2.5331 -0.0017 11 6 -0.4018 -3.9320 -0.6143 12 6 0.7782 -4.7525 -0.0296 13 1 0.5443 -5.1011 0.9763 14 6 1.1229 -5.9309 -0.9424 15 7 2.1973 -6.7206 -0.3356 16 6 2.6682 -7.8147 -0.9663 17 8 2.2009 -8.1466 -2.0389 18 6 3.7487 -8.6096 -0.3555 19 6 4.2815 -8.2319 0.8701 20 6 5.2955 -8.9704 1.4509 21 6 5.7880 -10.0933 0.8188 22 6 5.2715 -10.4947 -0.4099 23 16 5.6700 -11.8518 -1.4598 24 6 4.4848 -11.3574 -2.5842 25 7 3.8798 -10.2986 -2.1900 26 6 4.2455 -9.7651 -1.0206 27 6 1.9337 -3.7299 0.0019 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5994 -1.7585 -0.6170 30 1 -0.5292 -2.4866 1.0160 31 1 -0.3521 -3.8973 -1.7026 32 1 -1.3593 -4.3329 -0.2816 33 1 1.4508 -5.5557 -1.9119 34 1 0.2413 -6.5581 -1.0747 35 1 2.5703 -6.4557 0.5198 36 1 3.9016 -7.3545 1.3725 37 1 5.7030 -8.6676 2.4041 38 1 6.5764 -10.6674 1.2826 39 1 4.2714 -11.8718 -3.5094 40 1 2.5273 -3.8691 0.9053 41 1 2.5622 -3.8536 -0.8800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028535840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:45:31 Heat of formation + Delta-G solvation = 56.982958 kcal Electronic energy + Delta-G solvation = -24820.418383 eV Core-core repulsion = 21213.811444 eV Total energy + Delta-G solvation = -3606.606940 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.99750 -39.25593 -37.57967 -37.12704 -34.61176 -32.66085 -31.66703 -30.26215 -29.70312 -28.20764 -25.81992 -25.23297 -24.40857 -23.27663 -21.72803 -20.96125 -20.10218 -19.77318 -18.76658 -17.36571 -16.80575 -16.69889 -16.27853 -15.61557 -15.49425 -15.30898 -15.01771 -14.68607 -14.33903 -14.03893 -13.78566 -13.54991 -12.98257 -12.82377 -12.50792 -12.45385 -12.22314 -11.77278 -11.69359 -11.57401 -11.47342 -10.95566 -10.78879 -10.47123 -10.40648 -10.16324 -10.05643 -9.98107 -9.82162 -9.64398 -9.47926 -9.14645 -8.94561 -8.64723 -8.47311 -6.83650 -5.65278 -3.06953 -0.12555 0.47719 0.88357 1.33395 2.05471 2.70780 3.15584 3.40385 3.44528 3.45959 3.58552 3.66535 4.21265 4.45075 4.48649 4.58926 4.76370 4.80656 5.02435 5.14614 5.27328 5.30471 5.41063 5.53047 5.60667 5.67861 5.72374 5.82165 5.89742 6.08964 6.12890 6.16240 6.35318 6.46037 6.54743 6.59711 6.72939 6.91091 7.33698 7.51433 7.56117 7.61937 7.85950 8.28130 8.36609 9.22151 9.82929 10.47981 11.38654 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.002283 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.900701 B =12263.144685 C =12825.617635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.223 4.223 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.134 3.866 15 N -0.722 5.722 16 C 0.548 3.452 17 O -0.509 6.509 18 C -0.076 4.076 19 C -0.070 4.070 20 C -0.107 4.107 21 C -0.049 4.049 22 C -0.191 4.191 23 S 0.089 5.911 24 C 0.072 3.928 25 N -0.436 5.436 26 C 0.129 3.871 27 C 0.141 3.859 28 H 0.253 0.747 29 H 0.107 0.893 30 H 0.012 0.988 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.206 0.794 40 H 0.018 0.982 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.550 -24.778 2.224 27.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.011 3.989 15 N -0.375 5.375 16 C 0.333 3.667 17 O -0.384 6.384 18 C -0.082 4.082 19 C -0.092 4.092 20 C -0.129 4.129 21 C -0.071 4.071 22 C -0.310 4.310 23 S 0.343 5.657 24 C -0.233 4.233 25 N -0.147 5.147 26 C 0.006 3.994 27 C 0.015 3.985 28 H 0.063 0.937 29 H 0.125 0.875 30 H 0.030 0.970 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.222 0.778 40 H 0.036 0.964 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 10.389 -25.406 1.011 27.467 hybrid contribution 0.354 1.637 0.828 1.868 sum 10.743 -23.769 1.840 26.149 Atomic orbital electron populations 1.69788 1.04885 1.24891 1.57568 1.24791 0.95738 0.97724 1.02454 0.86149 0.78401 0.83044 0.77879 1.21155 1.21555 1.21243 1.19031 0.90459 0.82520 1.43155 0.90607 1.44568 1.01958 0.99677 1.86869 1.21926 0.84629 0.92535 0.98175 1.23006 0.95496 0.98551 1.00373 1.22454 0.98341 0.94004 0.98610 0.90580 1.21476 0.89027 0.91490 0.96911 1.46013 1.39284 1.27457 1.24699 1.17952 0.82591 0.80869 0.85251 1.90857 1.58284 1.68860 1.20434 1.19676 0.98594 0.94682 0.95277 1.21325 0.95331 0.99285 0.93247 1.21101 0.96688 0.94550 1.00551 1.20501 0.98658 0.96398 0.91568 1.23897 1.03672 1.01289 1.02150 1.83992 1.40408 1.26792 1.14520 1.28446 0.95425 0.95535 1.03880 1.65965 1.26327 1.09288 1.13103 1.18769 0.94352 0.96008 0.90300 1.21392 0.93474 0.85980 0.97700 0.93670 0.87534 0.97023 0.91798 0.92092 0.91087 0.91504 0.76642 0.83990 0.83797 0.84660 0.77764 0.96410 0.95685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.09 55.49 0.56 -26.35 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.22 -6.23 10.28 -15.06 -0.15 -6.38 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.60 -15.41 3.40 -169.83 -0.58 -15.99 16 10 C 0.15 3.66 5.89 -2.53 -0.01 3.65 16 11 C -0.13 -2.51 6.54 -24.58 -0.16 -2.67 16 12 C -0.11 -1.90 2.98 -88.78 -0.26 -2.17 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.13 2.04 5.00 -4.04 -0.02 2.02 16 15 N -0.72 -9.75 5.38 -61.39 -0.33 -10.08 16 16 C 0.55 8.42 7.76 -12.53 -0.10 8.32 16 17 O -0.51 -9.79 15.78 5.27 0.08 -9.71 16 18 C -0.08 -0.98 5.92 -104.38 -0.62 -1.59 16 19 C -0.07 -0.64 9.50 -39.35 -0.37 -1.01 16 20 C -0.11 -0.76 10.02 -39.69 -0.40 -1.16 16 21 C -0.05 -0.37 10.05 -39.33 -0.40 -0.77 16 22 C -0.19 -1.94 6.55 -38.59 -0.25 -2.19 16 23 S 0.09 0.69 23.18 -107.50 -2.49 -1.80 16 24 C 0.07 0.67 12.12 51.23 0.62 1.30 16 25 N -0.44 -6.07 9.43 -12.74 -0.12 -6.19 16 26 C 0.13 1.71 6.73 -84.89 -0.57 1.14 16 27 C 0.14 2.84 6.67 -2.90 -0.02 2.82 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.11 2.90 5.88 -51.93 -0.31 2.60 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 1.19 8.05 -51.93 -0.42 0.78 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.20 8.00 -51.93 -0.42 0.79 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 4.36 6.40 -40.82 -0.26 4.10 16 36 H 0.14 0.96 6.34 -52.49 -0.33 0.63 16 37 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.21 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.03 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -35.60 353.01 -10.46 -46.05 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.06 Total: 0.82 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.81 Total: 0.87 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.47 Total: -58.62 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.49 Total: -1.80 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.60 -10.46 -46.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028535840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.036 kcal (2) G-P(sol) polarization free energy of solvation -35.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds