Wall clock time and date at job start Sat Apr 11 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00160 * 2 1 4 4 H 1.48499 * 109.47205 * 274.98386 * 3 2 1 5 5 H 1.48508 * 109.47133 * 34.98440 * 3 2 1 6 6 H 1.48503 * 109.47215 * 154.98055 * 3 2 1 7 7 C 1.38811 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00121 * 187.05963 * 7 2 1 9 9 N 1.36939 * 119.99735 * 7.06255 * 7 2 1 10 10 C 1.47025 * 125.65043 * 354.78586 * 9 7 2 11 11 C 1.54320 * 107.27170 * 178.97387 * 10 9 7 12 12 C 1.55162 * 102.94394 * 337.81252 * 11 10 9 13 13 H 1.09006 * 111.00180 * 277.38772 * 12 11 10 14 14 C 1.53003 * 111.00611 * 153.57824 * 12 11 10 15 15 N 1.46498 * 109.47036 * 178.17860 * 14 12 11 16 16 C 1.34770 * 119.99904 * 179.97438 * 15 14 12 17 17 O 1.21583 * 120.00321 * 359.97438 * 16 15 14 18 18 C 1.47598 * 119.99819 * 179.97438 * 16 15 14 19 19 C 1.40188 * 120.12603 * 359.97438 * 18 16 15 20 20 C 1.35751 * 120.61466 * 180.02562 * 19 18 16 21 21 C 1.41247 * 120.63720 * 359.97438 * 20 19 18 22 22 N 1.34414 * 129.48463 * 180.02562 * 21 20 19 23 23 C 1.28054 * 117.91393 * 179.97438 * 22 21 20 24 24 S 1.70651 * 111.51923 * 359.73699 * 23 22 21 25 25 C 1.40146 * 118.74050 * 359.97438 * 21 20 19 26 26 C 1.38915 * 120.41138 * 0.03595 * 25 21 20 27 27 C 1.47473 * 125.62811 * 174.78573 * 9 7 2 28 28 H 0.97002 * 119.99369 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.88082 * 59.56075 * 10 9 7 30 30 H 1.08997 * 110.01152 * 298.46794 * 10 9 7 31 31 H 1.08999 * 110.72112 * 219.44493 * 11 10 9 32 32 H 1.09001 * 110.86911 * 96.23739 * 11 10 9 33 33 H 1.08998 * 109.47001 * 58.17430 * 14 12 11 34 34 H 1.09001 * 109.46250 * 298.17210 * 14 12 11 35 35 H 0.97008 * 119.99710 * 359.97438 * 15 14 12 36 36 H 1.08000 * 119.69751 * 0.02562 * 19 18 16 37 37 H 1.08003 * 119.68445 * 179.97438 * 20 19 18 38 38 H 1.08008 * 124.24167 * 180.02562 * 23 22 21 39 39 H 1.08002 * 120.07364 * 179.97438 * 26 25 21 40 40 H 1.09006 * 110.34669 * 85.25107 * 27 9 7 41 41 H 1.08995 * 110.40314 * 322.91905 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0840 -1.2057 0.1155 9 7 1.3332 -2.3836 -0.1448 10 6 -0.1284 -2.5324 -0.2013 11 6 -0.4289 -4.0333 -0.3969 12 6 0.8910 -4.5756 -1.0062 13 1 0.9255 -4.4012 -2.0816 14 6 1.0721 -6.0613 -0.6884 15 7 2.3038 -6.5480 -1.3147 16 6 2.6701 -7.8367 -1.1688 17 8 1.9787 -8.5953 -0.5171 18 6 3.9108 -8.3272 -1.8002 19 6 4.7097 -7.4550 -2.5527 20 6 5.8525 -7.8957 -3.1381 21 6 6.2592 -9.2413 -3.0003 22 7 7.3436 -9.8614 -3.4965 23 6 7.4976 -11.1045 -3.2302 24 16 6.2284 -11.6979 -2.2559 25 6 5.4610 -10.1128 -2.2472 26 6 4.2923 -9.6573 -1.6502 27 6 1.9500 -3.7173 -0.2704 28 1 -0.4849 0.8401 -0.0004 29 1 -0.5268 -1.9622 -1.0405 30 1 -0.5752 -2.1830 0.7295 31 1 -1.2593 -4.1734 -1.0890 32 1 -0.6391 -4.5149 0.5581 33 1 0.2213 -6.6219 -1.0758 34 1 1.1354 -6.1967 0.3913 35 1 2.8556 -5.9426 -1.8343 36 1 4.4134 -6.4228 -2.6677 37 1 6.4565 -7.2108 -3.7148 38 1 8.3292 -11.7014 -3.5748 39 1 3.6810 -10.3338 -1.0713 40 1 2.1572 -4.1334 0.7156 41 1 2.8659 -3.6585 -0.8583 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028968698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:45:53 Heat of formation + Delta-G solvation = 48.986933 kcal Electronic energy + Delta-G solvation = -24497.117760 eV Core-core repulsion = 20890.164087 eV Total energy + Delta-G solvation = -3606.953673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.110 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.97758 -39.70255 -37.76138 -36.86161 -34.80921 -32.61317 -31.58128 -30.81124 -29.64769 -28.26229 -26.09120 -25.38337 -23.99100 -23.03518 -22.48430 -20.77336 -20.00548 -19.93366 -19.02450 -17.67099 -16.88208 -16.79296 -16.32509 -15.74952 -15.46410 -15.15975 -14.81783 -14.59161 -14.38975 -14.23484 -13.93917 -13.61261 -13.23984 -13.18855 -12.84158 -12.38214 -12.23140 -12.00295 -11.77091 -11.42725 -11.30289 -10.92387 -10.82806 -10.63239 -10.49866 -10.21739 -10.13746 -10.07115 -9.94605 -9.83562 -9.69946 -9.26393 -9.01327 -8.59968 -8.56410 -6.85681 -5.75022 -3.07473 -0.27700 0.72124 0.77209 1.24305 1.60534 2.72968 3.05240 3.38271 3.43568 3.45404 3.45692 3.51503 4.16434 4.43239 4.47671 4.55028 4.71378 4.76879 4.98198 5.11207 5.18731 5.37308 5.39347 5.50658 5.58806 5.65493 5.70738 5.80707 5.85259 6.00096 6.02113 6.12020 6.30877 6.34607 6.46091 6.50260 6.64166 6.87039 7.08631 7.41150 7.53425 7.61120 7.80443 8.07817 8.23452 9.19292 9.79913 10.46163 11.37123 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.002204 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.224984 B =12703.396967 C =13853.992675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.715 5.715 16 C 0.558 3.442 17 O -0.538 6.538 18 C -0.113 4.113 19 C -0.076 4.076 20 C -0.066 4.066 21 C 0.098 3.902 22 N -0.467 5.467 23 C 0.069 3.931 24 S 0.113 5.887 25 C -0.194 4.194 26 C -0.006 4.006 27 C 0.141 3.859 28 H 0.252 0.748 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.402 0.598 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.206 0.794 39 H 0.146 0.854 40 H 0.019 0.981 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.017 -23.015 -7.279 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.009 3.991 15 N -0.367 5.367 16 C 0.344 3.656 17 O -0.417 6.417 18 C -0.120 4.120 19 C -0.098 4.098 20 C -0.087 4.087 21 C -0.023 4.023 22 N -0.179 5.179 23 C -0.235 4.235 24 S 0.367 5.633 25 C -0.312 4.312 26 C -0.029 4.029 27 C 0.015 3.985 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.238 0.762 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.223 0.777 39 H 0.164 0.836 40 H 0.037 0.963 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.713 -24.053 -6.710 27.172 hybrid contribution 0.631 2.054 -0.429 2.191 sum 11.345 -21.999 -7.139 25.761 Atomic orbital electron populations 1.69980 1.04929 1.25072 1.56692 1.24830 0.95705 0.97702 1.02132 0.86126 0.78701 0.83622 0.77499 1.21605 1.21758 1.20632 1.19051 0.91111 0.82570 1.43138 0.90454 1.44491 1.01719 1.00914 1.86131 1.21153 0.84423 0.88390 1.00895 1.22851 0.95217 0.99649 0.99598 1.22631 0.98738 0.91722 1.00754 0.90124 1.21471 0.85284 0.94215 0.98161 1.45988 1.26559 1.10186 1.53920 1.17985 0.84678 0.82367 0.80556 1.90790 1.54232 1.55782 1.40879 1.19936 0.96643 0.94100 1.01347 1.20897 0.93588 0.99987 0.95293 1.20314 0.96581 0.92040 0.99806 1.19422 0.90217 0.95695 0.97006 1.66211 1.20137 1.08717 1.22882 1.28254 1.02656 0.93828 0.98788 1.84116 1.18764 1.09155 1.51248 1.23765 1.02444 0.97685 1.07348 1.20419 0.92432 0.94856 0.95224 1.21594 0.94029 0.86689 0.96173 0.93729 0.93400 0.94054 0.91936 0.92156 0.91345 0.91029 0.76211 0.83977 0.83907 0.77711 0.83608 0.96292 0.94593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 10.36 55.49 0.57 -26.20 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 21.84 29.56 -169.99 -5.02 16.82 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.32 10.26 -15.06 -0.15 -6.48 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.61 -15.08 3.40 -170.04 -0.58 -15.65 16 10 C 0.18 4.16 5.38 -3.06 -0.02 4.15 16 11 C -0.13 -2.37 6.42 -24.90 -0.16 -2.53 16 12 C -0.12 -1.87 3.07 -88.47 -0.27 -2.14 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 14 C 0.13 1.80 5.12 -4.04 -0.02 1.78 16 15 N -0.72 -8.62 5.40 -61.33 -0.33 -8.96 16 16 C 0.56 7.31 7.76 -12.44 -0.10 7.21 16 17 O -0.54 -8.79 16.34 5.29 0.09 -8.70 16 18 C -0.11 -1.24 5.87 -105.00 -0.62 -1.86 16 19 C -0.08 -0.69 9.44 -39.74 -0.38 -1.06 16 20 C -0.07 -0.61 10.03 -39.33 -0.39 -1.01 16 21 C 0.10 1.03 7.00 -84.88 -0.59 0.44 16 22 N -0.47 -4.67 10.56 -12.83 -0.14 -4.80 16 23 C 0.07 0.47 12.11 51.19 0.62 1.09 16 24 S 0.11 0.81 23.17 -107.50 -2.49 -1.68 16 25 C -0.19 -1.95 6.54 -38.61 -0.25 -2.20 16 26 C -0.01 -0.07 9.62 -38.98 -0.37 -0.44 16 27 C 0.14 2.73 6.56 -2.51 -0.02 2.72 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.05 1.25 7.30 -51.93 -0.38 0.87 16 30 H 0.04 1.09 7.61 -51.93 -0.40 0.70 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.06 8.03 -51.93 -0.42 0.64 16 35 H 0.40 4.03 6.45 -40.82 -0.26 3.77 16 36 H 0.14 0.97 6.38 -52.49 -0.33 0.63 16 37 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 38 H 0.21 0.57 8.06 -52.48 -0.42 0.15 16 39 H 0.15 1.52 7.64 -52.49 -0.40 1.12 16 40 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -33.71 355.00 -10.47 -44.18 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.10 Total: 0.28 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.82 Total: -0.63 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.47 Total: -55.61 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.49 Total: -1.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.71 -10.47 -44.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028968698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.167 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds