Wall clock time and date at job start Sat Apr 11 2020 02:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99935 * 2 1 4 4 O 1.21687 * 120.00149 * 185.01988 * 3 2 1 5 5 C 1.46688 * 119.99787 * 5.01571 * 3 2 1 6 6 S 1.76216 * 126.12642 * 86.64670 * 5 3 2 7 7 C 1.70958 * 90.31077 * 179.97438 * 6 5 3 8 8 N 1.29424 * 110.39007 * 0.02562 * 7 6 5 9 9 C 1.30945 * 117.36899 * 359.70659 * 8 7 6 10 10 C 1.50698 * 122.91010 * 180.35091 * 9 8 7 11 11 F 1.39901 * 109.46897 * 30.34255 * 10 9 8 12 12 F 1.39893 * 109.47343 * 150.34082 * 10 9 8 13 13 C 1.46496 * 120.00409 * 179.97438 * 2 1 3 14 14 H 1.08994 * 110.64417 * 237.05421 * 13 2 1 15 15 C 1.55150 * 110.72183 * 113.90720 * 13 2 1 16 16 C 1.54909 * 101.58453 * 277.14252 * 15 13 2 17 17 N 1.47415 * 104.92839 * 322.93313 * 16 15 13 18 18 C 1.36942 * 125.65295 * 204.15384 * 17 16 15 19 19 H 1.07993 * 120.00495 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99316 * 0.02867 * 18 17 16 21 21 N 1.31618 * 120.00560 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99714 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47309 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47331 * 119.99587 * 22 20 18 25 25 H 1.48496 * 109.46940 * 239.99933 * 22 20 18 26 26 C 1.47295 * 108.56162 * 24.15589 * 17 16 15 27 27 H 1.09007 * 109.47206 * 264.45393 * 1 2 3 28 28 H 1.08993 * 109.47237 * 24.45822 * 1 2 3 29 29 H 1.09007 * 109.46957 * 144.45744 * 1 2 3 30 30 H 1.07999 * 124.80544 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.46840 * 270.34402 * 10 9 8 32 32 H 1.09008 * 111.00589 * 159.06742 * 15 13 2 33 33 H 1.09009 * 111.03538 * 35.23346 * 15 13 2 34 34 H 1.08997 * 110.36873 * 81.83153 * 16 15 13 35 35 H 1.09006 * 110.36866 * 204.03915 * 16 15 13 36 36 H 0.96993 * 120.00121 * 180.02562 * 21 20 18 37 37 H 1.08997 * 109.85557 * 239.50256 * 26 17 16 38 38 H 1.08994 * 110.00177 * 118.42270 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3522 1.1693 -0.0922 5 6 1.4096 2.4351 0.1111 6 16 0.9287 3.2293 1.6088 7 6 0.2151 4.5008 0.7164 8 7 0.3547 4.2941 -0.5536 9 6 0.9893 3.2092 -0.9207 10 6 1.2291 2.8497 -2.3644 11 9 1.3404 4.0194 -3.1239 12 9 2.4120 2.1105 -2.4707 13 6 2.1976 -1.2686 0.0006 14 1 2.8701 -1.3237 0.8565 15 6 2.9814 -1.4506 -1.3260 16 6 1.8816 -2.0093 -2.2630 17 7 1.0686 -2.8941 -1.4090 18 6 0.3012 -3.9408 -1.8460 19 1 -0.2605 -4.5313 -1.1375 20 6 0.2456 -4.2426 -3.1998 21 7 0.9299 -3.5226 -4.0633 22 14 -0.8006 -5.6708 -3.7960 23 1 -1.4652 -6.3160 -2.6352 24 1 -1.8306 -5.1693 -4.7407 25 1 0.0628 -6.6627 -4.4857 26 6 1.2205 -2.4633 -0.0086 27 1 -0.3634 -0.0993 1.0229 28 1 -0.3633 0.9354 -0.4255 29 1 -0.3633 -0.8363 -0.5974 30 1 -0.2819 5.3556 1.1508 31 1 0.3942 2.2545 -2.7341 32 1 3.7931 -2.1680 -1.2050 33 1 3.3582 -0.4954 -1.6919 34 1 1.2711 -1.1973 -2.6578 35 1 2.3303 -2.5767 -3.0785 36 1 0.8906 -3.7334 -5.0093 37 1 1.6276 -3.2797 0.5878 38 1 0.2553 -2.1558 0.3936 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033258065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:46:02 Heat of formation + Delta-G solvation = -33.963607 kcal Electronic energy + Delta-G solvation = -27387.000245 eV Core-core repulsion = 23222.220037 eV Total energy + Delta-G solvation = -4164.780208 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.98096 -46.98904 -40.58593 -39.50066 -37.28193 -34.65043 -32.43450 -31.43605 -29.47642 -28.20137 -27.18050 -26.70015 -25.06205 -24.28320 -22.23375 -20.35885 -19.94081 -19.32094 -18.40742 -17.68366 -17.29096 -17.02324 -16.68017 -16.49104 -16.03819 -15.26126 -15.12468 -14.67821 -14.53108 -13.96551 -13.81324 -13.72745 -13.30564 -13.07129 -12.94376 -12.86844 -12.73052 -12.28062 -12.12071 -11.76841 -11.57720 -11.26336 -11.03144 -10.99189 -10.80971 -10.33239 -10.23089 -10.12236 -10.02692 -9.92478 -9.74472 -9.55108 -9.41322 -8.70841 -8.42512 -6.90822 -5.69921 -3.13538 0.02143 0.63641 1.15684 2.10975 2.62161 3.08593 3.27192 3.35925 3.41432 3.44178 3.96919 4.19394 4.42886 4.44437 4.54727 4.78377 5.10763 5.18508 5.25980 5.36767 5.38267 5.44552 5.56578 5.68956 5.81611 5.96868 6.23903 6.30707 6.44780 6.62926 6.72984 6.93760 7.10959 7.41568 7.50157 7.57707 7.83379 8.11493 8.31568 9.15882 9.76127 10.40579 11.33038 Molecular weight = 331.09amu Principal moments of inertia in cm(-1) A = 0.017225 B = 0.003943 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.182598 B = 7099.408808 C = 7580.478439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.581 5.581 3 C 0.585 3.415 4 O -0.506 6.506 5 C -0.227 4.227 6 S 0.217 5.783 7 C 0.015 3.985 8 N -0.444 5.444 9 C 0.026 3.974 10 C 0.346 3.654 11 F -0.186 7.186 12 F -0.176 7.176 13 C 0.135 3.865 14 H 0.080 0.920 15 C -0.154 4.154 16 C 0.156 3.844 17 N -0.602 5.602 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.126 3.874 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.211 0.789 31 H 0.132 0.868 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.010 0.990 35 H 0.106 0.894 36 H 0.252 0.748 37 H 0.037 0.963 38 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 14.599 11.731 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.313 5.313 3 C 0.368 3.632 4 O -0.381 6.381 5 C -0.353 4.353 6 S 0.472 5.528 7 C -0.281 4.281 8 N -0.156 5.156 9 C -0.112 4.112 10 C 0.289 3.711 11 F -0.167 7.167 12 F -0.157 7.157 13 C 0.032 3.968 14 H 0.098 0.902 15 C -0.193 4.193 16 C 0.031 3.969 17 N -0.329 5.329 18 C -0.354 4.354 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.744 3.256 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.000 4.000 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.228 0.772 31 H 0.149 0.851 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.028 0.972 35 H 0.124 0.876 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.226 14.694 12.214 19.237 hybrid contribution -0.519 -0.626 -1.183 1.436 sum -2.744 14.068 11.031 18.087 Atomic orbital electron populations 1.21967 0.79398 1.03846 1.02224 1.47746 1.07174 1.05173 1.71245 1.16659 0.86616 0.81598 0.78306 1.90861 1.12619 1.86238 1.48392 1.25670 1.08582 1.03763 0.97258 1.84076 1.47292 1.14125 1.07320 1.28663 1.03794 1.04381 0.91283 1.65754 1.15616 1.17846 1.16375 1.20997 1.01292 0.92233 0.96703 1.19700 0.87044 0.79948 0.84372 1.93022 1.96738 1.50237 1.76739 1.93138 1.49988 1.76398 1.96157 1.22152 0.93832 0.81391 0.99410 0.90193 1.23383 0.99109 1.01306 0.95527 1.21898 0.89272 0.92248 0.93458 1.44614 1.54338 1.34257 0.99709 1.19082 1.19947 1.04899 0.91517 0.90410 1.24792 1.00381 0.99383 0.95807 1.69827 1.44556 1.40614 1.01597 0.86023 0.79416 0.81652 0.78507 1.20544 1.21774 1.21713 1.21688 0.95935 0.92753 0.89638 0.92436 0.92292 0.88034 0.77227 0.85079 0.91264 0.90746 0.97244 0.87642 0.93694 0.94544 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 8.97 59.85 0.54 1.47 16 2 N -0.58 -9.28 3.02 -173.38 -0.52 -9.80 16 3 C 0.59 9.61 5.48 -12.85 -0.07 9.54 16 4 O -0.51 -9.91 15.15 5.20 0.08 -9.84 16 5 C -0.23 -3.08 4.40 -37.09 -0.16 -3.25 16 6 S 0.22 1.96 23.21 -107.50 -2.50 -0.53 16 7 C 0.01 0.13 12.22 51.75 0.63 0.76 16 8 N -0.44 -5.42 10.31 -11.53 -0.12 -5.54 16 9 C 0.03 0.35 6.19 -83.89 -0.52 -0.17 16 10 C 0.35 5.01 5.70 36.00 0.21 5.22 16 11 F -0.19 -2.82 17.18 2.25 0.04 -2.78 16 12 F -0.18 -3.10 14.95 2.25 0.03 -3.06 16 13 C 0.13 2.38 3.32 -66.10 -0.22 2.16 16 14 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 15 C -0.15 -3.12 6.46 -24.59 -0.16 -3.28 16 16 C 0.16 3.72 5.86 -2.53 -0.01 3.71 16 17 N -0.60 -14.46 3.28 -169.86 -0.56 -15.02 16 18 C -0.23 -5.97 10.28 -15.06 -0.15 -6.13 16 19 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -26.10 10.09 55.49 0.56 -25.54 16 22 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 C 0.13 2.41 6.08 -2.91 -0.02 2.40 16 27 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.06 0.72 6.53 -51.93 -0.34 0.38 16 29 H 0.10 1.66 6.25 -51.92 -0.32 1.34 16 30 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.13 1.59 8.14 -51.93 -0.42 1.16 16 32 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 33 H 0.07 1.56 6.62 -51.92 -0.34 1.22 16 34 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.11 2.89 5.87 -51.93 -0.30 2.59 16 36 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.63 5.68 -51.93 -0.29 0.33 16 LS Contribution 332.52 15.07 5.01 5.01 Total: -1.00 -32.52 332.52 -7.15 -39.67 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -4.11 Total: -1.06 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -0.04 Total: 12.14 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.64 Total: -55.90 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.07 Total: -5.84 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.50 Total: -0.53 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.52 -7.15 -39.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033258065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.702 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds