Wall clock time and date at job start Sat Apr 11 2020 02:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 120.00271 * 2 1 4 4 O 1.21343 * 120.00058 * 176.45811 * 3 2 1 5 5 C 1.49448 * 119.99814 * 356.46232 * 3 2 1 6 6 N 1.34771 * 120.00382 * 185.90691 * 5 3 2 7 7 O 1.21358 * 120.00044 * 5.91198 * 5 3 2 8 8 C 1.46501 * 120.00020 * 180.02562 * 2 1 3 9 9 H 1.09003 * 110.88698 * 0.70032 * 8 2 1 10 10 C 1.54915 * 111.00374 * 124.58168 * 8 2 1 11 11 N 1.47421 * 104.83333 * 155.12446 * 10 8 2 12 12 C 1.34770 * 125.65096 * 155.90708 * 11 10 8 13 13 O 1.21282 * 120.00044 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00120 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.47119 * 179.97438 * 14 12 11 16 16 C 1.76204 * 100.00262 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99325 * 0.02562 * 16 15 14 18 18 C 1.38792 * 120.00459 * 179.97438 * 16 15 14 19 19 N 1.31634 * 119.99805 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00251 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46730 * 60.00271 * 20 18 16 22 22 H 1.48496 * 109.47010 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46928 * 300.00146 * 20 18 16 24 24 C 1.47028 * 108.70123 * 335.87002 * 11 10 8 25 25 C 1.54429 * 107.28117 * 1.06274 * 24 11 10 26 26 H 1.09000 * 110.72163 * 263.85120 * 25 24 11 27 27 O 1.42897 * 110.75898 * 140.54362 * 25 24 11 28 28 H 1.09000 * 109.46883 * 275.97346 * 1 2 3 29 29 H 1.08997 * 109.47036 * 35.96972 * 1 2 3 30 30 H 1.08993 * 109.47204 * 155.97147 * 1 2 3 31 31 H 0.97007 * 119.99608 * 359.97438 * 6 5 3 32 32 H 0.96998 * 120.00523 * 179.97438 * 6 5 3 33 33 H 1.09005 * 110.36462 * 273.95986 * 10 8 2 34 34 H 1.08994 * 110.36721 * 36.16761 * 10 8 2 35 35 H 1.08997 * 109.47096 * 299.99870 * 14 12 11 36 36 H 1.09003 * 109.47070 * 60.00199 * 14 12 11 37 37 H 0.96998 * 120.00014 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.88256 * 120.48099 * 24 11 10 39 39 H 1.09002 * 109.87774 * 241.49021 * 24 11 10 40 40 H 0.96701 * 114.00182 * 66.51742 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3507 1.1681 0.0649 5 6 1.3939 2.4602 -0.0799 6 7 2.0687 3.6206 -0.1999 7 8 0.1811 2.4654 -0.0365 8 6 2.1975 -1.2687 -0.0006 9 1 1.5099 -2.1145 -0.0134 10 6 3.1860 -1.3386 -1.1913 11 7 4.2300 -2.2860 -0.7600 12 6 5.0241 -3.0053 -1.5775 13 8 4.9097 -2.9009 -2.7803 14 6 6.0542 -3.9396 -0.9969 15 16 6.9538 -4.7551 -2.3392 16 6 8.0596 -5.7570 -1.4021 17 1 8.0297 -5.7301 -0.3229 18 6 8.9684 -6.5814 -2.0509 19 7 9.0044 -6.6145 -3.3663 20 14 10.1402 -7.6440 -1.0574 21 1 9.3604 -8.5735 -0.2011 22 1 11.0017 -8.4265 -1.9798 23 1 10.9896 -6.7773 -0.2016 24 6 4.2619 -2.3154 0.7096 25 6 3.1621 -1.3546 1.2117 26 1 3.5812 -0.3749 1.4411 27 8 2.4946 -1.9001 2.3513 28 1 -0.3633 0.1069 1.0221 29 1 -0.3633 0.8317 -0.6036 30 1 -0.3633 -0.9385 -0.4184 31 1 3.0382 3.6165 -0.2342 32 1 1.5851 4.4598 -0.2522 33 1 2.6807 -1.7109 -2.0825 34 1 3.6183 -0.3568 -1.3836 35 1 6.7535 -3.3726 -0.3823 36 1 5.5580 -4.6914 -0.3832 37 1 9.6397 -7.1904 -3.8197 38 1 4.0613 -3.3262 1.0646 39 1 5.2374 -1.9843 1.0658 40 1 3.0541 -1.9748 3.1365 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049366115.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:46:17 Heat of formation + Delta-G solvation = -122.173653 kcal Electronic energy + Delta-G solvation = -26286.316248 eV Core-core repulsion = 22228.798481 eV Total energy + Delta-G solvation = -4057.517767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51057 -39.97695 -38.76127 -37.73072 -36.18349 -35.38349 -33.99891 -32.43293 -31.10603 -28.98202 -28.39510 -27.28282 -25.55734 -25.03657 -23.35290 -22.03785 -20.10957 -19.52473 -18.30650 -17.93829 -17.75638 -17.48335 -16.77670 -16.62982 -16.20825 -16.08662 -15.31414 -15.14238 -14.80798 -14.60309 -14.44474 -14.28606 -13.91297 -13.76483 -13.43226 -13.12534 -12.98516 -12.77234 -12.73860 -12.51915 -12.20896 -11.86790 -11.76821 -11.05041 -11.04477 -10.99713 -10.77863 -10.61851 -10.37293 -9.84593 -9.74679 -9.46874 -9.22808 -9.06229 -8.52774 -8.24951 -6.51043 -6.21792 -3.92804 0.94367 1.88428 2.70130 2.80541 3.00365 3.18252 3.23318 3.26043 3.28993 3.54061 3.75550 4.03901 4.12534 4.20458 4.33176 4.66889 4.80470 4.92677 5.01651 5.07408 5.13241 5.26442 5.38991 5.45952 5.53015 5.55710 5.59981 5.67863 5.89190 5.98482 6.09581 6.12364 6.28963 6.43290 6.69014 7.23057 7.25121 7.53706 7.57055 7.59347 8.34653 8.49762 9.23204 10.85622 Molecular weight = 331.11amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.002443 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.422544 B =11458.213016 C =11792.361765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.571 5.571 3 C 0.503 3.497 4 O -0.511 6.511 5 C 0.516 3.484 6 N -0.821 5.821 7 O -0.516 6.516 8 C 0.140 3.860 9 H 0.121 0.879 10 C 0.099 3.901 11 N -0.618 5.618 12 C 0.551 3.449 13 O -0.512 6.512 14 C -0.146 4.146 15 S -0.059 6.059 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.077 3.923 25 C 0.078 3.922 26 H 0.097 0.903 27 O -0.556 6.556 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.415 0.585 32 H 0.412 0.588 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.269 0.731 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.824 18.226 11.976 27.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.304 5.304 3 C 0.285 3.715 4 O -0.387 6.387 5 C 0.295 3.705 6 N -0.387 5.387 7 O -0.392 6.392 8 C 0.035 3.965 9 H 0.139 0.861 10 C -0.025 4.025 11 N -0.357 5.357 12 C 0.340 3.660 13 O -0.385 6.385 14 C -0.297 4.297 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.047 4.047 25 C 0.017 3.983 26 H 0.115 0.885 27 O -0.361 6.361 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.090 0.910 31 H 0.246 0.754 32 H 0.244 0.756 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -17.497 18.032 9.619 26.904 hybrid contribution 1.615 -0.464 2.499 3.011 sum -15.882 17.568 12.118 26.603 Atomic orbital electron populations 1.22497 0.76665 1.04635 1.03817 1.47535 1.08536 1.04287 1.70019 1.20120 0.87549 0.85140 0.78672 1.90772 1.13148 1.87003 1.47802 1.20061 0.87455 0.85872 0.77127 1.43550 1.12672 1.07988 1.74442 1.90738 1.13417 1.86719 1.48298 1.22421 0.94176 0.85697 0.94158 0.86079 1.22425 0.88516 0.95168 0.96398 1.48184 1.37298 1.44053 1.06172 1.20057 0.80493 0.79396 0.86065 1.90716 1.68518 1.65152 1.14163 1.23506 0.99534 1.00474 1.06163 1.85407 1.41202 1.51076 1.05581 1.22812 1.22135 1.28684 0.94740 0.90967 1.24992 0.96917 0.96490 0.95166 1.70009 1.35551 1.37550 1.07176 0.86217 0.80012 0.79792 0.79438 1.19929 1.20802 1.19933 1.22689 0.99779 1.00769 0.81498 1.23298 0.91745 0.96894 0.86339 0.88544 1.86502 1.41387 1.86284 1.21938 0.91695 0.87428 0.90984 0.75414 0.75573 0.89545 0.89588 0.89209 0.89191 0.92107 0.90116 0.90562 0.76820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 9.56 59.85 0.57 1.06 16 2 N -0.57 -5.29 2.96 -171.99 -0.51 -5.80 16 3 C 0.50 4.89 7.00 -11.58 -0.08 4.81 16 4 O -0.51 -5.80 12.54 5.50 0.07 -5.73 16 5 C 0.52 4.26 8.05 -11.59 -0.09 4.17 16 6 N -0.82 -4.08 8.87 30.90 0.27 -3.81 16 7 O -0.52 -5.10 13.98 5.49 0.08 -5.02 16 8 C 0.14 1.44 3.27 -65.78 -0.22 1.22 16 9 H 0.12 1.16 7.80 -51.93 -0.41 0.75 16 10 C 0.10 1.30 6.28 -2.53 -0.02 1.28 16 11 N -0.62 -9.32 3.33 -170.45 -0.57 -9.89 16 12 C 0.55 10.87 7.87 -10.99 -0.09 10.79 16 13 O -0.51 -12.04 16.12 5.56 0.09 -11.95 16 14 C -0.15 -3.03 5.35 36.00 0.19 -2.84 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 16 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 17 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 20 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.08 0.88 6.27 -3.00 -0.02 0.86 16 25 C 0.08 0.77 3.69 -24.84 -0.09 0.68 16 26 H 0.10 1.02 5.86 -51.93 -0.30 0.72 16 27 O -0.56 -4.85 13.39 -35.23 -0.47 -5.32 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.11 0.86 5.36 -51.94 -0.28 0.58 16 30 H 0.07 0.43 7.83 -51.93 -0.41 0.03 16 31 H 0.42 1.70 8.32 -40.82 -0.34 1.36 16 32 H 0.41 1.20 8.93 -40.82 -0.36 0.84 16 33 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 34 H 0.09 1.21 5.93 -51.93 -0.31 0.90 16 35 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 36 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.08 0.87 8.06 -51.93 -0.42 0.46 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.38 1.81 9.12 45.56 0.42 2.22 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -37.43 352.08 -5.94 -43.37 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -4.06 Total: 2.74 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 0.36 Total: 9.05 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.07 Total: -44.98 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -0.24 Total: -28.02 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.43 -5.94 -43.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049366115.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.804 kcal (2) G-P(sol) polarization free energy of solvation -37.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds