Wall clock time and date at job start Sat Apr 11 2020 02:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.34769 * 120.00241 * 180.02562 * 11 10 9 13 13 O 1.21723 * 119.99749 * 359.97438 * 12 11 10 14 14 C 1.46288 * 120.00383 * 180.02562 * 12 11 10 15 15 N 1.29439 * 125.28121 * 0.02562 * 14 12 11 16 16 N 1.39333 * 113.99583 * 179.97438 * 15 14 12 17 17 C 1.39601 * 125.53980 * 180.02562 * 16 15 14 18 18 C 1.38970 * 120.07812 * 179.75076 * 17 16 15 19 19 C 1.38087 * 119.91799 * 179.76363 * 18 17 16 20 20 C 1.38293 * 120.08201 * 0.47966 * 19 18 17 21 21 C 1.38303 * 120.15856 * 359.77066 * 20 19 18 22 22 C 1.38090 * 120.08091 * 359.97438 * 21 20 19 23 23 C 1.47127 * 108.91719 * 359.97438 * 16 15 14 24 24 H 1.08996 * 110.58917 * 241.45634 * 23 16 15 25 25 C 1.50706 * 110.58211 * 118.69699 * 23 16 15 26 26 O 1.20817 * 120.00139 * 341.45868 * 25 23 16 27 27 O 1.34234 * 119.99738 * 161.45314 * 25 23 16 28 28 C 1.51199 * 125.28271 * 179.71917 * 14 12 11 29 29 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 34 34 H 0.97010 * 119.99910 * 359.97438 * 11 10 9 35 35 H 1.08001 * 120.03914 * 359.97438 * 18 17 16 36 36 H 1.08005 * 119.95752 * 180.22791 * 19 18 17 37 37 H 1.07993 * 119.92321 * 179.74444 * 20 19 18 38 38 H 1.08003 * 119.96060 * 179.97438 * 21 20 19 39 39 H 1.07993 * 120.04194 * 180.02562 * 22 21 20 40 40 H 0.96701 * 116.99680 * 180.02562 * 27 25 23 41 41 H 1.08995 * 110.52338 * 298.63592 * 28 14 12 42 42 H 1.08997 * 110.52683 * 61.39599 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.4041 -6.0979 -0.0003 14 6 1.4555 -7.3649 -0.0019 15 7 0.1666 -7.4841 -0.0039 16 7 -0.2804 -8.8038 -0.0052 17 6 -1.6166 -9.2080 -0.0079 18 6 -1.9351 -10.5607 -0.0142 19 6 -3.2579 -10.9568 -0.0119 20 6 -4.2652 -10.0093 -0.0133 21 6 -3.9520 -8.6622 -0.0122 22 6 -2.6314 -8.2586 -0.0092 23 6 0.8849 -9.7021 -0.0046 24 1 0.8917 -10.3216 -0.9013 25 6 0.8896 -10.5629 1.2324 26 8 0.2314 -10.2428 2.1937 27 8 1.6249 -11.6854 1.2661 28 6 2.0878 -8.7383 -0.0077 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5568 -0.8902 31 1 0.6248 -2.5571 0.8897 32 1 2.8721 -3.6043 -0.8905 33 1 2.8721 -3.6042 0.8895 34 1 0.5429 -4.9308 -0.0011 35 1 -1.1489 -11.3012 -0.0175 36 1 -3.5062 -12.0079 -0.0131 37 1 -5.2989 -10.3219 -0.0156 38 1 -4.7413 -7.9249 -0.0138 39 1 -2.3876 -7.2066 -0.0080 40 1 1.5957 -12.2050 2.0812 41 1 2.6892 -8.8784 -0.9059 42 1 2.6943 -8.8836 0.8862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821320249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:46:12 Heat of formation + Delta-G solvation = -41.557135 kcal Electronic energy + Delta-G solvation = -27260.057515 eV Core-core repulsion = 23206.424685 eV Total energy + Delta-G solvation = -4053.632830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.60074 -39.94473 -39.35432 -38.41685 -36.55760 -35.02218 -33.65139 -32.88806 -32.00955 -30.97931 -29.87444 -29.03603 -25.47590 -25.42605 -23.66831 -23.06274 -22.02413 -21.04810 -20.95432 -19.55427 -18.76097 -18.19468 -17.53756 -17.14718 -16.49946 -16.34292 -16.01959 -15.40608 -15.21614 -15.13129 -14.60096 -14.51863 -14.38893 -13.97670 -13.64823 -13.60723 -13.47185 -13.32818 -12.97671 -12.68840 -12.31871 -12.22333 -12.00678 -11.78121 -11.40041 -11.24169 -11.14486 -11.06234 -10.89099 -10.65537 -10.39369 -10.16417 -9.95190 -9.60518 -9.27101 -9.17792 -8.67265 -8.41382 -7.78849 -6.10120 -4.13355 0.75228 1.17987 1.41889 1.55628 1.84158 2.49668 3.22868 3.27704 3.28232 3.36255 3.41235 3.56123 3.65315 3.90905 4.34132 4.40863 4.56452 4.65264 4.67227 4.71323 4.94662 5.10462 5.18938 5.21809 5.26542 5.27059 5.36566 5.58618 5.82049 5.95791 6.11399 6.18101 6.26071 6.27172 6.36430 6.48552 6.63663 6.73111 6.90175 7.24078 7.36197 7.49568 7.58803 7.82648 7.87988 8.22301 8.37958 8.92638 9.51652 11.01460 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014309 B = 0.002597 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.272898 B =10779.814303 C =12432.166396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.011 3.989 10 C 0.119 3.881 11 N -0.697 5.697 12 C 0.585 3.415 13 O -0.534 6.534 14 C 0.039 3.961 15 N -0.171 5.171 16 N -0.448 5.448 17 C 0.227 3.773 18 C -0.172 4.172 19 C -0.081 4.081 20 C -0.158 4.158 21 C -0.080 4.080 22 C -0.149 4.149 23 C 0.121 3.879 24 H 0.129 0.871 25 C 0.466 3.534 26 O -0.485 6.485 27 O -0.511 6.511 28 C -0.095 4.095 29 H 0.262 0.738 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.406 0.594 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.415 0.585 41 H 0.127 0.873 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 -26.638 -0.942 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.026 4.026 10 C -0.002 4.002 11 N -0.346 5.346 12 C 0.367 3.633 13 O -0.409 6.409 14 C -0.156 4.156 15 N 0.019 4.981 16 N -0.250 5.250 17 C 0.131 3.869 18 C -0.195 4.195 19 C -0.100 4.100 20 C -0.178 4.178 21 C -0.099 4.099 22 C -0.171 4.171 23 C 0.013 3.987 24 H 0.147 0.853 25 C 0.304 3.696 26 O -0.370 6.370 27 O -0.323 6.323 28 C -0.135 4.135 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.241 0.759 35 H 0.130 0.870 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.275 0.725 41 H 0.145 0.855 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.394 -25.709 -1.022 26.102 hybrid contribution 0.539 -0.073 0.698 0.884 sum -3.856 -25.781 -0.324 26.070 Atomic orbital electron populations 1.69967 1.06087 1.26814 1.50261 1.25001 0.94893 0.99439 0.94970 0.86455 0.80140 0.83331 0.77621 1.19572 1.20932 1.20946 1.21060 0.93274 0.90255 1.51450 0.92110 1.19350 0.94196 0.90956 0.98130 1.21895 0.96204 0.80785 1.01322 1.46303 1.11288 1.06047 1.71010 1.16541 0.86534 0.81659 0.78559 1.90863 1.12229 1.86784 1.51039 1.24879 0.90498 0.96612 1.03585 1.74915 1.14427 1.01261 1.07483 1.48011 1.02758 0.99099 1.75102 1.17253 0.79466 0.93060 0.97092 1.20487 0.97350 0.92655 1.08992 1.20818 0.91559 0.99563 0.98014 1.21058 0.99268 0.93065 1.04370 1.21040 0.95592 0.96119 0.97143 1.20846 0.91493 0.99734 1.04986 1.21791 0.88139 0.93014 0.95715 0.85347 1.23556 0.76367 0.79951 0.89701 1.90808 1.39449 1.70502 1.36281 1.84504 1.65521 1.35812 1.46480 1.21861 0.96103 0.88163 1.07371 0.92858 0.95727 0.95762 0.91880 0.91933 0.75865 0.86963 0.85724 0.85936 0.85325 0.84567 0.72546 0.85478 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.46 5.61 -4.04 -0.02 2.43 16 11 N -0.70 -12.20 5.55 -61.74 -0.34 -12.55 16 12 C 0.59 9.71 7.77 -13.03 -0.10 9.61 16 13 O -0.53 -10.14 16.92 5.17 0.09 -10.05 16 14 C 0.04 0.54 7.27 -80.12 -0.58 -0.05 16 15 N -0.17 -2.38 10.89 34.93 0.38 -2.00 16 16 N -0.45 -5.59 3.52 -52.29 -0.18 -5.77 16 17 C 0.23 2.80 6.27 -83.78 -0.53 2.28 16 18 C -0.17 -1.80 8.83 -39.37 -0.35 -2.15 16 19 C -0.08 -0.73 10.04 -39.62 -0.40 -1.13 16 20 C -0.16 -1.42 10.04 -39.54 -0.40 -1.82 16 21 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 22 C -0.15 -1.82 9.64 -39.37 -0.38 -2.20 16 23 C 0.12 1.17 3.30 -68.14 -0.22 0.94 16 24 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 25 C 0.47 4.60 5.76 36.01 0.21 4.81 16 26 O -0.49 -6.65 16.77 -18.74 -0.31 -6.96 16 27 O -0.51 -3.26 13.42 -39.27 -0.53 -3.78 16 28 C -0.09 -0.95 6.39 -27.04 -0.17 -1.12 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.41 6.65 8.09 -40.82 -0.33 6.32 16 35 H 0.11 1.01 6.39 -52.49 -0.34 0.68 16 36 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.14 1.73 7.66 -52.49 -0.40 1.33 16 40 H 0.41 1.02 9.10 45.56 0.41 1.44 16 41 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.11 1.07 7.73 -51.93 -0.40 0.67 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -34.46 369.91 -7.91 -42.37 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -4.40 Total: 4.70 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -3.89 Total: -2.49 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.59 Total: -45.54 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.75 Total: -20.80 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.46 -7.91 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.811 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds