Wall clock time and date at job start Sat Apr 11 2020 02:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.34769 * 120.00241 * 180.02562 * 11 10 9 13 13 O 1.21723 * 119.99749 * 359.97438 * 12 11 10 14 14 C 1.46288 * 120.00383 * 180.02562 * 12 11 10 15 15 N 1.29439 * 125.28121 * 0.02562 * 14 12 11 16 16 N 1.39333 * 113.99583 * 179.97438 * 15 14 12 17 17 C 1.39601 * 125.53980 * 180.02562 * 16 15 14 18 18 C 1.38970 * 120.07812 * 179.75076 * 17 16 15 19 19 C 1.38087 * 119.91799 * 179.76363 * 18 17 16 20 20 C 1.38293 * 120.08201 * 0.47966 * 19 18 17 21 21 C 1.38303 * 120.15856 * 359.77066 * 20 19 18 22 22 C 1.38090 * 120.08091 * 359.97438 * 21 20 19 23 23 C 1.47127 * 108.91719 * 359.97438 * 16 15 14 24 24 H 1.08996 * 110.58917 * 241.45634 * 23 16 15 25 25 C 1.50706 * 110.58211 * 118.69699 * 23 16 15 26 26 O 1.20817 * 120.00139 * 341.45868 * 25 23 16 27 27 O 1.34234 * 119.99738 * 161.45314 * 25 23 16 28 28 C 1.51199 * 125.28271 * 179.71917 * 14 12 11 29 29 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 34 34 H 0.97010 * 119.99910 * 359.97438 * 11 10 9 35 35 H 1.08001 * 120.03914 * 359.97438 * 18 17 16 36 36 H 1.08005 * 119.95752 * 180.22791 * 19 18 17 37 37 H 1.07993 * 119.92321 * 179.74444 * 20 19 18 38 38 H 1.08003 * 119.96060 * 179.97438 * 21 20 19 39 39 H 1.07993 * 120.04194 * 180.02562 * 22 21 20 40 40 H 0.96701 * 116.99680 * 180.02562 * 27 25 23 41 41 H 1.08995 * 110.52338 * 298.63592 * 28 14 12 42 42 H 1.08997 * 110.52683 * 61.39599 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.1868 -6.0979 -0.0007 13 8 3.4041 -6.0979 -0.0003 14 6 1.4555 -7.3649 -0.0019 15 7 0.1666 -7.4841 -0.0039 16 7 -0.2804 -8.8038 -0.0052 17 6 -1.6166 -9.2080 -0.0079 18 6 -1.9351 -10.5607 -0.0142 19 6 -3.2579 -10.9568 -0.0119 20 6 -4.2652 -10.0093 -0.0133 21 6 -3.9520 -8.6622 -0.0122 22 6 -2.6314 -8.2586 -0.0092 23 6 0.8849 -9.7021 -0.0046 24 1 0.8917 -10.3216 -0.9013 25 6 0.8896 -10.5629 1.2324 26 8 0.2314 -10.2428 2.1937 27 8 1.6249 -11.6854 1.2661 28 6 2.0878 -8.7383 -0.0077 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5568 -0.8902 31 1 0.6248 -2.5571 0.8897 32 1 2.8721 -3.6043 -0.8905 33 1 2.8721 -3.6042 0.8895 34 1 0.5429 -4.9308 -0.0011 35 1 -1.1489 -11.3012 -0.0175 36 1 -3.5062 -12.0079 -0.0131 37 1 -5.2989 -10.3219 -0.0156 38 1 -4.7413 -7.9249 -0.0138 39 1 -2.3876 -7.2066 -0.0080 40 1 1.5957 -12.2050 2.0812 41 1 2.6892 -8.8784 -0.9059 42 1 2.6943 -8.8836 0.8862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821320249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:46:11 Heat of formation + Delta-G solvation = -65.573026 kcal Electronic energy + Delta-G solvation = -27261.098922 eV Core-core repulsion = 23206.424685 eV Total energy + Delta-G solvation = -4054.674237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.45112 -40.96385 -40.33775 -39.39086 -37.25693 -36.68751 -34.94177 -34.43383 -32.89887 -31.86212 -31.47156 -30.03973 -27.15815 -26.25396 -25.03686 -23.82784 -23.10488 -22.61005 -21.84751 -20.78532 -19.47931 -19.01649 -18.68297 -18.31152 -18.03663 -17.28514 -16.80125 -16.69966 -16.64318 -16.47054 -15.99443 -15.61948 -15.28975 -15.01316 -14.82916 -14.62738 -14.39733 -14.35310 -14.30429 -13.83175 -13.54628 -13.22984 -13.07866 -12.94824 -12.71882 -12.54107 -12.49682 -12.27876 -12.20265 -11.98137 -11.81347 -11.74089 -11.49811 -11.19643 -10.79975 -10.61382 -10.14265 -9.95446 -8.64544 -8.23354 -6.34110 -0.27251 0.40447 0.57784 0.75546 1.02266 1.42196 1.43039 1.56178 1.73311 1.98219 2.10275 2.42983 2.69106 2.87173 3.09579 3.11731 3.40096 3.75272 3.89085 3.96284 4.02292 4.24038 4.28813 4.40218 4.45511 4.48766 4.50119 4.51592 4.60257 4.75540 4.84475 5.06714 5.14092 5.29527 5.39021 5.43986 5.45851 5.56624 5.60908 5.71909 5.77956 6.08159 6.14382 6.24862 6.48452 6.77701 6.79544 6.97292 7.35444 8.88932 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014309 B = 0.002597 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.272898 B =10779.814303 C =12432.166396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.020 3.980 10 C 0.139 3.861 11 N -0.700 5.700 12 C 0.592 3.408 13 O -0.558 6.558 14 C 0.025 3.975 15 N -0.186 5.186 16 N -0.450 5.450 17 C 0.200 3.800 18 C -0.175 4.175 19 C -0.080 4.080 20 C -0.156 4.156 21 C -0.088 4.088 22 C -0.176 4.176 23 C 0.118 3.882 24 H 0.163 0.837 25 C 0.476 3.524 26 O -0.530 6.530 27 O -0.495 6.495 28 C -0.089 4.089 29 H 0.265 0.735 30 H 0.008 0.992 31 H 0.005 0.995 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.411 0.589 35 H 0.127 0.873 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.434 0.566 41 H 0.154 0.846 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 -28.851 -1.347 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.018 4.018 10 C 0.016 3.984 11 N -0.350 5.350 12 C 0.376 3.624 13 O -0.434 6.434 14 C -0.169 4.169 15 N 0.003 4.997 16 N -0.253 5.253 17 C 0.106 3.894 18 C -0.197 4.197 19 C -0.098 4.098 20 C -0.175 4.175 21 C -0.106 4.106 22 C -0.198 4.198 23 C 0.011 3.989 24 H 0.181 0.819 25 C 0.317 3.683 26 O -0.418 6.418 27 O -0.309 6.309 28 C -0.129 4.129 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.023 0.977 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.246 0.754 35 H 0.145 0.855 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.136 0.864 40 H 0.297 0.703 41 H 0.171 0.829 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.181 -27.978 -1.429 28.325 hybrid contribution 0.365 0.473 0.839 1.030 sum -3.816 -27.505 -0.590 27.775 Atomic orbital electron populations 1.70083 1.07667 1.27920 1.51135 1.25910 0.95773 1.03247 0.94470 0.85368 0.79085 0.78651 0.77763 1.18627 1.20303 1.20455 1.21489 0.93748 0.91607 1.51290 0.91771 1.19159 0.94317 0.91988 0.96287 1.21414 0.95013 0.80973 1.00975 1.46138 1.11407 1.05670 1.71795 1.16759 0.86297 0.82111 0.77242 1.90839 1.13295 1.87318 1.51969 1.24470 0.90792 0.96627 1.05023 1.74824 1.14814 1.03216 1.06839 1.48105 1.03611 0.98792 1.74758 1.17566 0.79399 0.94017 0.98466 1.20739 0.98559 0.91951 1.08470 1.21255 0.90879 1.01226 0.96490 1.21436 1.00839 0.92392 1.02828 1.21295 0.95083 0.97436 0.96829 1.20913 0.92849 0.99144 1.06861 1.22092 0.86672 0.93001 0.97085 0.81942 1.23514 0.75631 0.80285 0.88920 1.90803 1.41537 1.71753 1.37746 1.84461 1.64083 1.34619 1.47710 1.21963 0.96347 0.85802 1.08808 0.92607 0.97381 0.97684 0.92036 0.92419 0.75352 0.85544 0.82609 0.83164 0.83948 0.86403 0.70323 0.82871 0.86762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.01 13.29 21.45 0.28 -54.73 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.01 5.09 29.85 0.15 1.17 16 10 C 0.14 5.88 5.61 86.38 0.48 6.37 16 11 N -0.70 -25.38 5.55 -467.46 -2.59 -27.98 16 12 C 0.59 19.95 7.77 86.34 0.67 20.62 16 13 O -0.56 -21.25 16.92 -4.42 -0.07 -21.32 16 14 C 0.02 0.68 7.27 45.16 0.33 1.01 16 15 N -0.19 -5.27 10.89 -43.41 -0.47 -5.74 16 16 N -0.45 -11.03 3.52 -319.36 -1.12 -12.16 16 17 C 0.20 4.89 6.27 38.25 0.24 5.13 16 18 C -0.18 -3.34 8.83 22.41 0.20 -3.14 16 19 C -0.08 -1.23 10.04 22.25 0.22 -1.00 16 20 C -0.16 -2.46 10.04 22.30 0.22 -2.23 16 21 C -0.09 -1.73 10.04 22.25 0.22 -1.51 16 22 C -0.18 -4.43 9.64 22.41 0.22 -4.22 16 23 C 0.12 2.06 3.30 44.51 0.15 2.20 16 24 H 0.16 1.69 8.14 -2.39 -0.02 1.67 16 25 C 0.48 8.50 5.76 71.24 0.41 8.91 16 26 O -0.53 -14.08 16.77 21.99 0.37 -13.71 16 27 O -0.50 -4.85 13.42 -51.45 -0.69 -5.54 16 28 C -0.09 -1.65 6.39 30.39 0.19 -1.46 16 29 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 30 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.41 14.20 8.09 -92.70 -0.75 13.45 16 35 H 0.13 1.95 6.39 -2.91 -0.02 1.93 16 36 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 39 H 0.12 3.26 7.66 -2.91 -0.02 3.24 16 40 H 0.43 0.89 9.10 -74.06 -0.67 0.22 16 41 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.11 2.03 7.73 -2.39 -0.02 2.01 16 Total: -1.00 -75.79 369.91 1.79 -74.01 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.34 Total: 18.87 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 4.41 Total: 2.64 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -3.91 Total: -100.61 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.40 Total: -40.56 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -75.79 1.79 -74.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.435 kcal (2) G-P(sol) polarization free energy of solvation -75.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds