Wall clock time and date at job start Sat Apr 11 2020 02:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 119.99966 * 2 1 4 4 H 1.48507 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47270 * 300.00351 * 3 2 1 6 6 H 1.48498 * 109.47091 * 60.00464 * 3 2 1 7 7 C 1.38895 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00521 * 187.36290 * 7 2 1 9 9 N 1.37221 * 119.99797 * 7.36272 * 7 2 1 10 10 C 1.34769 * 119.99759 * 230.16789 * 9 7 2 11 11 O 1.21267 * 120.00192 * 184.97516 * 10 9 7 12 12 C 1.50700 * 120.00298 * 4.96695 * 10 9 7 13 13 C 1.53004 * 109.47273 * 184.99605 * 12 10 9 14 14 C 1.53001 * 109.46923 * 180.02562 * 13 12 10 15 15 N 1.46507 * 109.47063 * 180.02562 * 14 13 12 16 16 C 1.33876 * 122.75395 * 269.70901 * 15 14 13 17 17 O 1.21220 * 125.40208 * 359.97438 * 16 15 14 18 18 C 1.51318 * 109.19966 * 179.83905 * 16 15 14 19 19 C 1.54228 * 103.55805 * 0.38768 * 18 16 15 20 20 C 1.33870 * 122.76213 * 89.99641 * 15 14 13 21 21 O 1.21223 * 125.40179 * 359.97438 * 20 15 14 22 22 C 1.39420 * 119.99854 * 50.16179 * 9 7 2 23 23 C 1.39065 * 119.70271 * 5.00426 * 22 9 7 24 24 C 1.38375 * 119.10388 * 180.02562 * 23 22 9 25 25 C 1.38836 * 118.48958 * 359.97438 * 24 23 22 26 26 C 1.38145 * 119.31154 * 0.25742 * 25 24 23 27 27 N 1.31879 * 120.84835 * 359.46864 * 26 25 24 28 28 H 0.96996 * 119.99886 * 354.98616 * 1 2 3 29 29 H 1.09001 * 109.47471 * 304.99412 * 12 10 9 30 30 H 1.09003 * 109.46959 * 64.99492 * 12 10 9 31 31 H 1.08996 * 109.46883 * 299.99805 * 13 12 10 32 32 H 1.09003 * 109.47220 * 60.00047 * 13 12 10 33 33 H 1.09007 * 109.47295 * 299.99981 * 14 13 12 34 34 H 1.08993 * 109.47443 * 59.99808 * 14 13 12 35 35 H 1.09002 * 110.80079 * 241.77632 * 18 16 15 36 36 H 1.09001 * 110.54771 * 118.87510 * 18 16 15 37 37 H 1.09001 * 110.60815 * 241.25903 * 19 18 16 38 38 H 1.09004 * 110.60740 * 118.29026 * 19 18 16 39 39 H 1.08003 * 120.44665 * 0.04076 * 23 22 9 40 40 H 1.07996 * 120.76052 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.34064 * 179.97438 * 25 24 23 42 42 H 1.07995 * 119.57192 * 179.75152 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2125 7 6 2.0086 -1.2029 -0.0005 8 1 3.0819 -1.2069 0.1193 9 7 1.3309 -2.3862 -0.1534 10 6 1.5435 -3.4005 0.7082 11 8 1.0141 -4.4755 0.5218 12 6 2.4392 -3.1990 1.9032 13 6 2.6099 -4.5276 2.6426 14 6 3.5188 -4.3228 3.8562 15 7 3.6827 -5.5951 4.5638 16 6 2.8673 -5.9849 5.5515 17 8 1.9212 -5.3539 5.9713 18 6 3.3118 -7.3396 6.0584 19 6 4.5445 -7.6639 5.1900 20 6 4.6634 -6.4610 4.2798 21 8 5.5120 -6.3062 3.4281 22 6 0.4225 -2.5392 -1.1998 23 6 0.2843 -1.5290 -2.1455 24 6 -0.6214 -1.6935 -3.1787 25 6 -1.3603 -2.8678 -3.2309 26 6 -1.1750 -3.8274 -2.2546 27 7 -0.3004 -3.6451 -1.2845 28 1 -0.4850 0.8368 0.0734 29 1 3.4135 -2.8405 1.5708 30 1 1.9914 -2.4652 2.5733 31 1 1.6357 -4.8861 2.9751 32 1 3.0577 -5.2615 1.9725 33 1 4.4931 -3.9641 3.5241 34 1 3.0706 -3.5892 4.5261 35 1 2.5303 -8.0845 5.9086 36 1 3.5887 -7.2821 7.1111 37 1 4.3761 -8.5701 4.6081 38 1 5.4350 -7.7651 5.8105 39 1 0.8761 -0.6283 -2.0747 40 1 -0.7501 -0.9264 -3.9279 41 1 -2.0758 -3.0273 -4.0240 42 1 -1.7504 -4.7407 -2.2889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892464607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:48:36 Heat of formation + Delta-G solvation = -45.466110 kcal Electronic energy + Delta-G solvation = -27983.641142 eV Core-core repulsion = 23929.838806 eV Total energy + Delta-G solvation = -4053.802336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.95110 -39.71578 -38.65069 -37.93891 -36.02530 -35.20486 -34.61572 -32.13590 -31.88734 -30.97175 -29.27455 -26.80584 -26.37332 -25.27518 -23.13016 -22.50865 -22.16435 -21.32211 -19.56319 -19.18143 -17.95831 -17.29236 -17.07940 -16.58478 -16.07356 -15.67233 -15.18899 -14.91448 -14.85930 -14.58649 -14.33971 -14.26527 -14.09266 -13.97881 -13.68088 -13.46371 -13.08443 -12.83187 -12.57333 -12.25093 -11.94526 -11.81711 -11.67399 -11.62025 -11.35545 -11.33778 -11.01594 -10.78222 -10.63869 -10.46226 -10.38594 -10.13488 -9.77907 -9.37436 -8.98578 -8.89135 -8.65892 -7.89014 -6.99700 -6.44111 -4.52141 1.37459 2.27843 2.40918 2.47787 2.59647 2.99770 3.09708 3.13104 3.79710 3.85587 3.95203 3.99805 4.17559 4.37606 4.54993 4.70065 5.03888 5.14331 5.19507 5.23180 5.26300 5.28156 5.32894 5.47317 5.60865 5.74331 5.78414 5.85475 6.04616 6.10005 6.25930 6.39255 6.46801 6.54903 6.65182 6.76738 6.87181 7.13430 7.19132 7.20986 7.29592 7.58932 7.65519 7.95372 8.22935 8.82838 8.92064 9.36635 9.80430 10.44637 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013700 B = 0.003251 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.285626 B = 8611.579246 C = 9785.466493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.051 3.949 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.360 4.360 8 H 0.099 0.901 9 N -0.388 5.388 10 C 0.493 3.507 11 O -0.525 6.525 12 C -0.114 4.114 13 C -0.117 4.117 14 C 0.097 3.903 15 N -0.572 5.572 16 C 0.524 3.476 17 O -0.478 6.478 18 C -0.157 4.157 19 C -0.157 4.157 20 C 0.524 3.476 21 O -0.480 6.480 22 C 0.386 3.614 23 C -0.143 4.143 24 C -0.081 4.081 25 C -0.238 4.238 26 C 0.106 3.894 27 N -0.496 5.496 28 H 0.275 0.725 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.136 0.864 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.032 -8.372 8.208 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.158 4.158 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.488 4.488 8 H 0.116 0.884 9 N -0.100 5.100 10 C 0.282 3.718 11 O -0.401 6.401 12 C -0.155 4.155 13 C -0.156 4.156 14 C -0.023 4.023 15 N -0.315 5.315 16 C 0.312 3.688 17 O -0.349 6.349 18 C -0.197 4.197 19 C -0.197 4.197 20 C 0.313 3.687 21 O -0.351 6.351 22 C 0.156 3.844 23 C -0.167 4.167 24 C -0.107 4.107 25 C -0.260 4.260 26 C -0.053 4.053 27 N -0.212 5.212 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.153 0.847 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.733 -8.979 8.563 14.117 hybrid contribution -0.013 1.885 -0.678 2.004 sum 6.720 -7.093 7.885 12.556 Atomic orbital electron populations 1.69976 1.06210 1.28625 1.42851 1.25632 0.95403 1.00261 0.94553 0.85985 0.80050 0.81179 0.78400 1.18727 1.20149 1.20196 1.19458 0.92236 0.81749 1.55319 0.88380 1.41195 1.35240 1.13213 1.20385 1.20814 0.82821 0.84365 0.83773 1.90654 1.49764 1.25596 1.74050 1.21275 1.00835 0.97200 0.96170 1.21647 0.99988 0.98588 0.95342 1.21932 1.02335 0.83175 0.94854 1.46801 1.28930 1.21435 1.34284 1.20816 0.81267 0.88239 0.78444 1.90803 1.25752 1.59748 1.58592 1.22473 0.99264 0.95548 1.02432 1.22477 1.00360 0.98328 0.98535 1.20815 0.79727 0.84855 0.83301 1.90792 1.35012 1.77431 1.31907 1.18817 0.89905 0.88838 0.86867 1.21505 1.01066 1.00173 0.93947 1.21147 0.95594 0.96548 0.97383 1.21630 1.04842 0.96981 1.02588 1.22254 0.94608 0.97972 0.90466 1.67590 1.07323 1.22269 1.23993 0.91399 0.89310 0.88725 0.90854 0.91175 0.88749 0.88675 0.86147 0.86334 0.86177 0.86313 0.84672 0.86726 0.86945 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.76 11.12 55.49 0.62 -21.15 16 2 C 0.05 1.22 3.59 -17.49 -0.06 1.15 16 3 Si 0.92 18.18 29.56 -169.99 -5.03 13.16 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.36 -8.73 7.67 -14.90 -0.11 -8.84 16 8 H 0.10 2.22 7.36 -52.49 -0.39 1.83 16 9 N -0.39 -10.03 2.68 -60.71 -0.16 -10.19 16 10 C 0.49 12.14 7.58 -10.99 -0.08 12.06 16 11 O -0.52 -14.15 14.28 5.57 0.08 -14.07 16 12 C -0.11 -2.19 4.62 -27.88 -0.13 -2.31 16 13 C -0.12 -1.99 4.84 -26.73 -0.13 -2.12 16 14 C 0.10 1.33 5.56 -4.04 -0.02 1.30 16 15 N -0.57 -6.93 2.55 -115.33 -0.29 -7.23 16 16 C 0.52 5.96 8.08 -11.08 -0.09 5.87 16 17 O -0.48 -7.30 17.47 5.61 0.10 -7.20 16 18 C -0.16 -0.93 7.03 -26.94 -0.19 -1.11 16 19 C -0.16 -0.91 7.03 -26.94 -0.19 -1.10 16 20 C 0.52 5.86 8.08 -11.09 -0.09 5.77 16 21 O -0.48 -7.11 17.48 5.61 0.10 -7.01 16 22 C 0.39 10.15 6.63 -154.64 -1.02 9.13 16 23 C -0.14 -3.43 7.61 -39.22 -0.30 -3.73 16 24 C -0.08 -1.67 10.17 -39.31 -0.40 -2.07 16 25 C -0.24 -4.68 10.11 -39.39 -0.40 -5.08 16 26 C 0.11 2.31 11.18 -17.57 -0.20 2.12 16 27 N -0.50 -12.94 7.92 -12.34 -0.10 -13.04 16 28 H 0.28 6.70 8.32 -40.82 -0.34 6.36 16 29 H 0.09 1.55 7.54 -51.93 -0.39 1.16 16 30 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 31 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.09 1.21 7.83 -51.92 -0.41 0.80 16 34 H 0.09 1.25 7.82 -51.93 -0.41 0.85 16 35 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.14 3.29 5.55 -52.48 -0.29 3.00 16 40 H 0.11 2.00 8.06 -52.49 -0.42 1.57 16 41 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.14 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -34.74 359.62 -7.92 -42.66 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.24 Total: 7.61 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -3.42 Total: 11.03 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.06 Total: -51.60 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: 0.28 Total: -28.28 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.74 -7.92 -42.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892464607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.806 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds