Wall clock time and date at job start Sat Apr 11 2020 02:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34745 * 126.44623 * 2 1 4 4 C 1.33972 * 107.75435 * 180.26791 * 3 2 1 5 5 N 1.30252 * 108.76122 * 359.74154 * 4 3 2 6 6 C 1.34332 * 126.44220 * 179.82456 * 2 1 3 7 7 C 1.50705 * 126.16331 * 359.97438 * 6 2 1 8 8 N 1.46504 * 109.46942 * 269.71907 * 7 6 2 9 9 C 1.34776 * 119.99835 * 180.02562 * 8 7 6 10 10 O 1.21586 * 120.00194 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99844 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00093 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47192 * 180.02562 * 12 11 9 14 14 C 1.38328 * 119.96230 * 269.98024 * 13 12 11 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47010 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46908 * 119.99967 * 23 21 19 26 26 H 1.48504 * 109.47373 * 240.00300 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99825 * 13 12 11 28 28 H 1.08998 * 109.46993 * 270.18105 * 1 2 3 29 29 H 1.08998 * 109.47259 * 30.17609 * 1 2 3 30 30 H 1.08994 * 109.47573 * 150.17731 * 1 2 3 31 31 H 1.08007 * 125.61869 * 179.70093 * 4 3 2 32 32 H 1.08997 * 109.46955 * 149.71742 * 7 6 2 33 33 H 1.08995 * 109.47053 * 29.71430 * 7 6 2 34 34 H 0.97005 * 119.99925 * 359.97438 * 8 7 6 35 35 H 0.97004 * 119.99718 * 0.02562 * 11 9 8 36 36 H 1.09002 * 109.46490 * 60.00223 * 12 11 9 37 37 H 1.08992 * 109.46880 * 300.00477 * 12 11 9 38 38 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 39 39 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 40 40 H 1.08006 * 120.03715 * 180.31908 * 16 15 14 41 41 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 42 42 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0839 0.0000 4 6 3.5765 0.6546 -0.0060 5 7 3.5781 -0.6479 -0.0040 6 6 2.3049 -1.0806 0.0033 7 6 1.8544 -2.5188 0.0083 8 7 1.7154 -2.9822 1.3911 9 6 1.3210 -4.2463 1.6417 10 8 1.0801 -5.0020 0.7202 11 7 1.1936 -4.6728 2.9139 12 6 0.7644 -6.0468 3.1864 13 6 0.7019 -6.2675 4.6759 14 6 1.8167 -6.7273 5.3535 15 6 1.7631 -6.9316 6.7201 16 6 0.5975 -6.6707 7.4136 17 6 -0.5249 -6.2144 6.7354 18 8 -1.6738 -5.9628 7.4134 19 6 -1.6969 -6.2900 8.7212 20 1 -0.8017 -6.6553 9.2024 21 6 -2.8701 -6.1576 9.4483 22 7 -3.9607 -5.7131 8.8620 23 14 -2.9024 -6.6116 11.2600 24 1 -1.5569 -7.0822 11.6764 25 1 -3.2798 -5.4203 12.0622 26 1 -3.8960 -7.6928 11.4818 27 6 -0.4682 -6.0108 5.3626 28 1 -0.3633 0.0032 1.0277 29 1 -0.3634 0.8884 -0.5165 30 1 -0.3634 -0.8915 -0.5110 31 1 4.4537 1.2847 -0.0121 32 1 2.5925 -3.1325 -0.5082 33 1 0.8939 -2.6003 -0.5005 34 1 1.9079 -2.3793 2.1263 35 1 1.3854 -4.0697 3.6491 36 1 1.4764 -6.7441 2.7450 37 1 -0.2221 -6.2118 2.7533 38 1 2.7308 -6.9272 4.8141 39 1 2.6350 -7.2911 7.2463 40 1 0.5578 -6.8255 8.4818 41 1 -4.7815 -5.6209 9.3706 42 1 -1.3384 -5.6525 4.8328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092490821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:47:05 Heat of formation + Delta-G solvation = -7.468443 kcal Electronic energy + Delta-G solvation = -26316.085314 eV Core-core repulsion = 22263.930681 eV Total energy + Delta-G solvation = -4052.154633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.79726 -39.98068 -39.07271 -36.91868 -36.05517 -34.48661 -34.29251 -32.81547 -32.34101 -30.77652 -29.19461 -28.35695 -26.41510 -25.55928 -24.80622 -22.67231 -21.72535 -21.30267 -20.97000 -20.77825 -18.75392 -17.83086 -17.41072 -17.12351 -16.94758 -16.15186 -15.89433 -15.32701 -15.07860 -14.69813 -14.60830 -14.47289 -14.28971 -14.08629 -13.61519 -13.59394 -13.50649 -13.22709 -13.01611 -12.64869 -12.56580 -12.38601 -12.08492 -11.69032 -11.67842 -11.38972 -10.95999 -10.92210 -10.81433 -10.69552 -10.47365 -10.25543 -9.41669 -9.33222 -9.16954 -8.90824 -8.77704 -8.25557 -7.33559 -6.50431 -4.09804 0.96863 1.83484 2.11943 2.26839 2.32048 3.00350 3.09577 3.10572 3.15805 3.24667 3.71046 3.91493 4.27552 4.30514 4.34620 4.57451 4.71858 4.93484 4.98263 5.05414 5.06517 5.27210 5.32753 5.40203 5.54273 5.55190 5.64838 5.77843 5.83403 5.85466 5.93540 6.07255 6.24897 6.28646 6.55088 6.56320 6.81457 6.89715 7.00221 7.19185 7.27280 7.28116 7.35045 7.70462 7.93937 8.02019 8.61277 8.95207 9.63997 10.67465 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.002054 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.522051 B =13631.155647 C =14495.228647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.015 4.015 3 O -0.203 6.203 4 C 0.168 3.832 5 N -0.472 5.472 6 C -0.039 4.039 7 C 0.226 3.774 8 N -0.745 5.745 9 C 0.706 3.294 10 O -0.594 6.594 11 N -0.735 5.735 12 C 0.187 3.813 13 C -0.073 4.073 14 C -0.194 4.194 15 C -0.077 4.077 16 C -0.225 4.225 17 C 0.150 3.850 18 O -0.177 6.177 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.861 5.861 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.275 1.275 27 C -0.170 4.170 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.251 0.749 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.397 0.603 35 H 0.399 0.601 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.270 0.730 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.762 11.725 -14.620 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.070 4.070 3 O -0.090 6.090 4 C -0.059 4.059 5 N -0.200 5.200 6 C -0.159 4.159 7 C 0.102 3.898 8 N -0.401 5.401 9 C 0.406 3.594 10 O -0.473 6.473 11 N -0.390 5.390 12 C 0.064 3.936 13 C -0.074 4.074 14 C -0.213 4.213 15 C -0.095 4.095 16 C -0.245 4.245 17 C 0.096 3.904 18 O -0.080 6.080 19 C -0.469 4.469 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.496 5.496 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.190 4.190 28 H 0.109 0.891 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.267 0.733 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.230 0.770 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.080 0.920 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.589 10.804 -15.498 22.163 hybrid contribution -0.099 0.878 1.758 1.968 sum 11.490 11.682 -13.740 21.384 Atomic orbital electron populations 1.20410 0.83499 1.04753 1.04506 1.23403 0.95158 0.84095 1.04350 1.84470 1.18503 1.36396 1.69607 1.28059 0.85619 0.91059 1.01196 1.70360 1.22581 1.10296 1.16764 1.21419 0.88385 0.96772 1.09287 1.19164 1.01347 0.86248 0.83086 1.45058 1.74453 1.12437 1.08191 1.15871 0.78246 0.81658 0.83627 1.90922 1.57830 1.54906 1.43612 1.45250 1.73104 1.14942 1.05701 1.20006 1.00487 0.81307 0.91828 1.19283 0.93749 1.00856 0.93462 1.20500 0.97772 1.08616 0.94417 1.20750 0.96812 0.97983 0.93960 1.21244 0.93632 1.08720 1.00904 1.19330 0.87180 0.92495 0.91404 1.83981 1.29645 1.70818 1.23588 1.21371 0.98042 1.45348 0.82107 0.88993 1.25296 0.94183 0.96636 1.00392 1.70042 1.00631 1.42160 1.36763 0.85645 0.78844 0.78457 0.80467 1.19092 1.20134 1.20090 1.20094 0.98347 1.08796 0.91727 0.89127 0.89991 0.88526 0.73296 0.89881 0.89867 0.76966 0.76727 0.91062 0.90956 0.87460 0.87298 0.85484 0.92009 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.22 36.01 0.37 -0.04 16 2 C -0.02 -0.12 7.39 -35.69 -0.26 -0.39 16 3 O -0.20 -1.64 10.78 5.37 0.06 -1.58 16 4 C 0.17 1.17 13.23 52.09 0.69 1.86 16 5 N -0.47 -4.72 11.29 -11.17 -0.13 -4.85 16 6 C -0.04 -0.37 6.47 -82.81 -0.54 -0.91 16 7 C 0.23 2.30 6.01 -5.19 -0.03 2.26 16 8 N -0.74 -8.04 5.55 -66.41 -0.37 -8.41 16 9 C 0.71 9.87 8.57 -86.91 -0.74 9.12 16 10 O -0.59 -10.44 16.34 5.29 0.09 -10.35 16 11 N -0.74 -9.73 5.55 -66.42 -0.37 -10.10 16 12 C 0.19 2.76 5.80 -5.19 -0.03 2.73 16 13 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 14 C -0.19 -3.16 9.70 -39.53 -0.38 -3.54 16 15 C -0.08 -1.34 10.04 -39.61 -0.40 -1.73 16 16 C -0.23 -4.68 9.17 -39.40 -0.36 -5.04 16 17 C 0.15 3.46 6.65 -39.11 -0.26 3.20 16 18 O -0.18 -4.90 9.76 0.05 0.00 -4.90 16 19 C -0.39 -10.69 9.49 30.89 0.29 -10.39 16 20 H 0.09 2.32 5.21 -52.49 -0.27 2.04 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 22 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 23 Si 0.94 20.10 29.55 -169.99 -5.02 15.07 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 27 C -0.17 -3.39 9.65 -39.39 -0.38 -3.77 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 0.47 7.16 -51.93 -0.37 0.10 16 31 H 0.25 0.51 8.06 -52.48 -0.42 0.08 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.78 7.16 -51.93 -0.37 0.41 16 34 H 0.40 3.65 8.48 -40.82 -0.35 3.30 16 35 H 0.40 4.69 8.48 -40.82 -0.35 4.34 16 36 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 37 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 38 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -34.40 370.18 -7.03 -41.43 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -4.94 Total: 9.60 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -2.68 Total: -7.46 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.11 Total: -47.39 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.14 Total: -16.83 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.40 -7.03 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092490821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.963 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds