Wall clock time and date at job start Sat Apr 11 2020 02:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31887 * 118.94963 * 2 1 4 4 C 1.32134 * 120.96438 * 179.97438 * 3 2 1 5 5 C 1.39977 * 118.92065 * 359.74335 * 4 3 2 6 6 C 1.47834 * 120.93700 * 180.27060 * 5 4 3 7 7 O 1.21551 * 119.99439 * 143.32680 * 6 5 4 8 8 N 1.34771 * 120.00231 * 323.33620 * 6 5 4 9 9 C 1.46499 * 119.99853 * 179.97438 * 8 6 5 10 10 H 1.08996 * 109.47290 * 35.00361 * 9 8 6 11 11 C 1.50703 * 109.47076 * 154.99882 * 9 8 6 12 12 H 1.08002 * 119.99853 * 0.02562 * 11 9 8 13 13 C 1.37870 * 120.00100 * 180.02562 * 11 9 8 14 14 N 1.31515 * 120.00454 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00016 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47304 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47218 * 119.99994 * 15 13 11 18 18 H 1.48504 * 109.47387 * 239.99793 * 15 13 11 19 19 C 1.52997 * 109.47147 * 274.99532 * 9 8 6 20 20 F 1.39906 * 109.46985 * 60.00334 * 19 9 8 21 21 F 1.39909 * 109.47068 * 179.97438 * 19 9 8 22 22 F 1.39893 * 109.47551 * 300.00241 * 19 9 8 23 23 C 1.39929 * 118.12239 * 0.51501 * 5 4 3 24 24 C 1.50697 * 120.53933 * 179.76113 * 23 5 4 25 25 C 1.53005 * 109.47154 * 229.93922 * 24 23 5 26 26 C 1.52997 * 109.47076 * 109.93333 * 24 23 5 27 27 N 1.31853 * 118.94971 * 180.02562 * 2 1 3 28 28 H 1.08990 * 109.47371 * 269.97999 * 1 2 3 29 29 H 1.09000 * 109.46844 * 29.98438 * 1 2 3 30 30 H 1.09000 * 109.46740 * 149.97877 * 1 2 3 31 31 H 1.07992 * 120.53787 * 180.02562 * 4 3 2 32 32 H 0.97002 * 120.00184 * 359.97438 * 8 6 5 33 33 H 0.96989 * 120.00584 * 180.02562 * 14 13 11 34 34 H 1.09007 * 109.46564 * 349.93770 * 24 23 5 35 35 H 1.08994 * 109.47073 * 60.00083 * 25 24 23 36 36 H 1.08998 * 109.46726 * 299.99602 * 25 24 23 37 37 H 1.08995 * 109.46773 * 179.97438 * 25 24 23 38 38 H 1.09004 * 109.46966 * 180.02562 * 26 24 23 39 39 H 1.08998 * 109.47470 * 300.00506 * 26 24 23 40 40 H 1.09003 * 109.46591 * 60.00830 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1541 0.0000 4 6 3.4660 1.2005 0.0005 5 6 4.1855 -0.0001 0.0065 6 6 5.6639 -0.0001 0.0133 7 8 6.2686 -0.8431 0.6468 8 7 6.3410 0.9345 -0.6826 9 6 7.8060 0.9347 -0.6753 10 1 8.1693 -0.0923 -0.6412 11 6 8.3144 1.6061 -1.9251 12 1 7.6160 1.9941 -2.6519 13 6 9.6709 1.7249 -2.1407 14 7 10.5214 1.2528 -1.2556 15 14 10.3011 2.5576 -3.6895 16 1 9.1501 2.9988 -4.5176 17 1 11.1247 3.7361 -3.3178 18 1 11.1295 1.5995 -4.4647 19 6 8.3098 1.6952 0.5530 20 9 7.8378 1.0719 1.7132 21 9 9.7088 1.6949 0.5602 22 9 7.8434 3.0134 0.5091 23 6 3.4661 -1.2003 0.0007 24 6 4.1856 -2.5244 0.0013 25 6 3.6186 -3.4135 -1.1073 26 6 3.9907 -3.2101 1.3551 27 7 2.1453 -1.1538 -0.0005 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 3.9816 2.1494 0.0009 32 1 5.8584 1.6070 -1.1883 33 1 11.4757 1.3367 -1.4070 34 1 5.2491 -2.3600 -0.1729 35 1 3.7575 -2.9250 -2.0716 36 1 2.5552 -3.5778 -0.9330 37 1 4.1393 -4.3710 -1.1071 38 1 4.5115 -4.1676 1.3556 39 1 4.3946 -2.5767 2.1448 40 1 2.9273 -3.3744 1.5292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928809021.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:47:48 Heat of formation + Delta-G solvation = -137.854533 kcal Electronic energy + Delta-G solvation = -29741.907609 eV Core-core repulsion = 25142.242270 eV Total energy + Delta-G solvation = -4599.665338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.43893 -46.09541 -45.69666 -41.38119 -38.93866 -36.19960 -34.74201 -33.62161 -32.66172 -32.12798 -29.47269 -27.96348 -27.06373 -24.90140 -24.66800 -23.68350 -21.73694 -20.63538 -20.22818 -18.11018 -17.82581 -16.94125 -16.79825 -16.66222 -16.08517 -15.68626 -15.47799 -15.02924 -14.72497 -14.59191 -13.88230 -13.82386 -13.45532 -13.27621 -13.21240 -13.00898 -12.63974 -12.58386 -12.55985 -12.49055 -12.36995 -12.10907 -12.08140 -11.90744 -11.59801 -11.49683 -11.27458 -11.25207 -11.03310 -10.94481 -10.70500 -10.51740 -10.47166 -9.74592 -9.45977 -9.34675 -9.27286 -8.81731 -8.42242 -6.32046 -4.56641 0.53526 0.99351 3.00151 3.13271 3.20902 3.23846 3.50030 3.69606 3.79712 3.95289 4.14177 4.30409 4.45791 4.84445 4.86482 4.87510 5.13749 5.16870 5.21359 5.26617 5.34932 5.46373 5.69354 5.72584 5.72903 5.76688 5.77047 5.89516 5.98168 6.08362 6.10050 6.26582 6.32360 6.43917 6.76800 6.91245 6.96623 7.34587 7.54176 7.97792 8.09564 8.38974 8.62291 9.11730 10.59603 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.015612 B = 0.003871 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.039777 B = 7231.477128 C = 7354.956455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.326 3.674 3 N -0.525 5.525 4 C 0.184 3.816 5 C -0.235 4.235 6 C 0.559 3.441 7 O -0.517 6.517 8 N -0.701 5.701 9 C 0.245 3.755 10 H 0.089 0.911 11 C -0.553 4.553 12 H 0.079 0.921 13 C 0.066 3.934 14 N -0.838 5.838 15 Si 0.916 3.084 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.417 3.583 20 F -0.217 7.217 21 F -0.135 7.135 22 F -0.209 7.209 23 C 0.240 3.760 24 C -0.062 4.062 25 C -0.139 4.139 26 C -0.130 4.130 27 N -0.516 5.516 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.175 0.825 32 H 0.399 0.601 33 H 0.269 0.731 34 H 0.115 0.885 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.175 -3.485 0.745 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.060 3.940 3 N -0.240 5.240 4 C 0.017 3.983 5 C -0.243 4.243 6 C 0.343 3.657 7 O -0.394 6.394 8 N -0.350 5.350 9 C 0.140 3.860 10 H 0.106 0.894 11 C -0.590 4.590 12 H 0.097 0.903 13 C -0.143 4.143 14 N -0.471 5.471 15 Si 0.742 3.258 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.205 1.205 19 C 0.361 3.639 20 F -0.199 7.199 21 F -0.116 7.116 22 F -0.190 7.190 23 C 0.092 3.908 24 C -0.081 4.081 25 C -0.196 4.196 26 C -0.188 4.188 27 N -0.231 5.231 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.192 0.808 32 H 0.234 0.766 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.496 -4.099 1.269 15.118 hybrid contribution 1.265 1.193 -0.656 1.859 sum -13.231 -2.906 0.614 13.560 Atomic orbital electron populations 1.20583 0.85584 1.04215 1.03914 1.23432 0.98294 0.83494 0.88821 1.68270 1.09684 1.30082 1.15942 1.23514 0.89441 0.97862 0.87444 1.21778 0.96756 0.96287 1.09440 1.17804 0.85466 0.82328 0.80070 1.90769 1.69223 1.37309 1.42065 1.46048 1.08499 1.31112 1.49330 1.19817 0.75402 0.99167 0.91647 0.89374 1.20891 0.92551 1.41826 1.03753 0.90323 1.25072 0.96538 0.95223 0.97476 1.70394 1.03173 1.41578 1.31959 0.86149 0.79009 0.79030 0.81616 1.19375 1.20495 1.20501 1.23119 0.78031 0.77627 0.85172 1.93078 1.89055 1.82800 1.54997 1.93415 1.26393 1.96010 1.95816 1.92992 1.89133 1.40147 1.96776 1.21834 0.88732 0.95004 0.85188 1.20520 1.01096 0.89011 0.97498 1.21773 1.01636 0.99015 0.97195 1.21656 1.01613 1.00305 0.95243 1.68106 1.09146 1.29899 1.15927 0.89531 0.89508 0.89544 0.80816 0.76642 0.92051 0.86720 0.93019 0.91681 0.91877 0.91716 0.92260 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.31 36.01 0.37 -0.36 16 2 C 0.33 4.25 7.64 -157.06 -1.20 3.05 16 3 N -0.53 -7.31 10.32 -10.39 -0.11 -7.42 16 4 C 0.18 2.62 10.64 -16.77 -0.18 2.44 16 5 C -0.23 -3.77 5.81 -104.69 -0.61 -4.38 16 6 C 0.56 10.58 6.55 -12.34 -0.08 10.50 16 7 O -0.52 -11.18 13.10 5.32 0.07 -11.11 16 8 N -0.70 -13.56 4.92 -55.89 -0.28 -13.83 16 9 C 0.24 5.77 2.21 -69.08 -0.15 5.62 16 10 H 0.09 2.31 7.58 -51.93 -0.39 1.91 16 11 C -0.55 -13.50 8.46 -34.44 -0.29 -13.79 16 12 H 0.08 1.82 7.74 -52.49 -0.41 1.41 16 13 C 0.07 1.66 5.20 -17.82 -0.09 1.56 16 14 N -0.84 -22.21 9.50 55.43 0.53 -21.68 16 15 Si 0.92 19.51 29.54 -169.99 -5.02 14.49 16 16 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 C 0.42 10.25 2.81 37.16 0.10 10.35 16 20 F -0.22 -5.31 15.68 2.25 0.04 -5.27 16 21 F -0.14 -3.63 12.91 2.25 0.03 -3.60 16 22 F -0.21 -4.92 16.94 2.25 0.04 -4.89 16 23 C 0.24 3.65 5.55 -81.82 -0.45 3.20 16 24 C -0.06 -0.89 2.71 -91.77 -0.25 -1.14 16 25 C -0.14 -1.66 9.02 37.16 0.34 -1.33 16 26 C -0.13 -1.70 9.18 37.16 0.34 -1.36 16 27 N -0.52 -7.27 9.78 -6.67 -0.07 -7.33 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.17 2.11 7.78 -52.49 -0.41 1.70 16 32 H 0.40 6.67 7.87 -40.82 -0.32 6.35 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.11 1.92 5.33 -51.93 -0.28 1.64 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.75 7.91 -51.93 -0.41 0.34 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 347.75 15.07 5.24 5.24 Total: -1.00 -29.00 347.75 -6.42 -35.42 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.73 Total: 5.61 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: -2.16 Total: 14.36 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.08 Total: -50.26 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.07 Total: -11.11 kcal Atomic # 9 Polarization: -13.85 SS G_CDS: 0.10 Total: -13.75 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.00 -6.42 -35.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928809021.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.438 kcal (2) G-P(sol) polarization free energy of solvation -28.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds