Wall clock time and date at job start Sat Apr 11 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35812 * 116.99892 * 2 1 4 4 C 1.38784 * 119.93995 * 0.02562 * 3 2 1 5 5 C 1.37815 * 120.17908 * 179.97438 * 4 3 2 6 6 C 1.39766 * 120.04851 * 359.97438 * 5 4 3 7 7 C 1.43199 * 120.06947 * 180.02562 * 6 5 4 8 8 N 6.70179 * 116.90228 * 0.02562 * 2 1 3 9 9 C 1.39681 * 119.87008 * 359.72610 * 6 5 4 10 10 C 1.38409 * 119.82420 * 0.52767 * 9 6 5 11 11 N 1.39898 * 120.02535 * 179.77380 * 10 9 6 12 12 C 1.34775 * 120.00209 * 33.60073 * 11 10 9 13 13 O 1.21389 * 119.99867 * 354.84041 * 12 11 10 14 14 C 1.49328 * 120.00112 * 175.12697 * 12 11 10 15 15 O 1.21365 * 120.00159 * 359.43232 * 14 12 11 16 16 N 1.34777 * 120.00199 * 179.43768 * 14 12 11 17 17 C 1.46501 * 120.00030 * 354.33865 * 16 14 12 18 18 C 1.46499 * 120.00204 * 174.33016 * 16 14 12 19 19 H 1.09003 * 109.47026 * 0.02562 * 18 16 14 20 20 C 1.52998 * 109.47042 * 119.99914 * 18 16 14 21 21 C 1.50699 * 109.47646 * 240.00081 * 18 16 14 22 22 H 1.08001 * 119.99866 * 0.02562 * 21 18 16 23 23 C 1.37880 * 120.00255 * 179.97438 * 21 18 16 24 24 N 1.31514 * 119.99776 * 0.02562 * 23 21 18 25 25 Si 1.86797 * 120.00089 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.46911 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47230 * 120.00207 * 25 23 21 28 28 H 1.48501 * 109.47426 * 240.00472 * 25 23 21 29 29 H 1.08996 * 109.47469 * 299.99971 * 1 2 3 30 30 H 1.09003 * 109.47508 * 60.00118 * 1 2 3 31 31 H 1.09003 * 109.47330 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.90571 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.97975 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.09139 * 180.29345 * 9 6 5 35 35 H 0.97000 * 119.99557 * 213.60484 * 11 10 9 36 36 H 1.08997 * 109.47163 * 84.04415 * 17 16 14 37 37 H 1.08993 * 109.46900 * 204.05449 * 17 16 14 38 38 H 1.09007 * 109.46347 * 324.04488 * 17 16 14 39 39 H 1.09004 * 109.47446 * 300.00691 * 20 18 16 40 40 H 1.09003 * 109.47230 * 60.00160 * 20 18 16 41 41 H 1.09003 * 109.47707 * 180.02562 * 20 18 16 42 42 H 0.96995 * 119.99757 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2883 2.3732 0.0005 5 6 1.9089 3.6038 0.0011 6 6 3.3042 3.6840 0.0016 7 6 3.9494 4.9624 0.0027 8 7 4.4613 5.9765 0.0027 9 6 4.0682 2.5146 0.0074 10 6 3.4395 1.2816 0.0015 11 7 4.2006 0.1077 0.0025 12 6 5.3798 0.0697 0.6540 13 8 5.8263 1.0785 1.1604 14 6 6.1402 -1.2121 0.7476 15 8 5.6914 -2.2219 0.2457 16 7 7.3248 -1.2477 1.3893 17 6 7.9259 -0.0078 1.8869 18 6 8.0113 -2.5263 1.5896 19 1 7.4168 -3.3299 1.1549 20 6 9.3815 -2.4813 0.9102 21 6 8.1902 -2.7748 3.0651 22 1 7.8283 -2.0528 3.7821 23 6 8.8150 -3.9245 3.4999 24 7 9.2553 -4.8040 2.6268 25 14 9.0361 -4.2329 5.3289 26 1 8.4572 -3.1003 6.0953 27 1 8.3430 -5.4908 5.7061 28 1 10.4833 -4.3529 5.6393 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2100 2.3138 0.0014 33 1 1.3165 4.5069 0.0019 34 1 5.1466 2.5724 0.0126 35 1 3.8796 -0.6787 -0.4658 36 1 7.5058 0.2334 2.8633 37 1 9.0043 -0.1376 1.9772 38 1 7.7147 0.8034 1.1900 39 1 9.2521 -2.3015 -0.1571 40 1 9.9762 -1.6777 1.3445 41 1 9.8922 -3.4328 1.0587 42 1 9.6944 -5.6129 2.9326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275963473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:47:41 Heat of formation + Delta-G solvation = -26.639590 kcal Electronic energy + Delta-G solvation = -27766.337632 eV Core-core repulsion = 23713.351675 eV Total energy + Delta-G solvation = -4052.985956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27277 -40.07202 -38.46393 -37.89724 -36.41163 -35.83948 -34.73128 -32.79564 -30.98497 -30.31318 -29.52291 -27.83658 -26.33690 -25.33060 -24.88014 -23.70705 -22.82735 -20.81415 -19.65979 -18.98401 -18.46418 -17.41559 -16.80363 -16.57798 -16.42363 -16.10432 -15.79290 -15.45137 -15.00745 -14.70507 -14.40209 -14.33833 -14.13003 -14.02759 -13.61871 -13.25776 -12.98759 -12.77287 -12.64539 -12.62181 -12.38405 -12.34749 -11.91245 -11.64197 -11.50811 -11.39390 -11.12436 -10.85902 -10.80596 -10.71633 -10.62390 -10.26769 -10.22865 -9.25293 -9.06642 -8.88110 -8.49672 -8.21723 -7.77037 -6.13923 -4.22311 0.46895 0.81983 1.78550 2.42900 2.58621 2.67684 2.81420 3.23922 3.32081 3.36107 3.52469 3.62667 3.72116 3.97185 4.34469 4.36278 4.47091 4.71333 4.72853 4.78392 4.81939 5.08389 5.14962 5.18039 5.36949 5.45647 5.68454 5.88941 5.94582 6.02754 6.22224 6.32918 6.51333 6.67357 6.72668 6.86817 6.93853 7.05046 7.24459 7.32203 7.34563 7.63609 7.79870 7.95192 8.05994 8.31846 8.55742 8.83624 9.44294 10.91507 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.002951 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.739580 B = 9485.049558 C =10386.937478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.137 3.863 4 C -0.194 4.194 5 C -0.044 4.044 6 C -0.051 4.051 7 C 0.263 3.737 8 N -0.422 5.422 9 C -0.040 4.040 10 C 0.121 3.879 11 N -0.642 5.642 12 C 0.510 3.490 13 O -0.502 6.502 14 C 0.495 3.505 15 O -0.534 6.534 16 N -0.551 5.551 17 C 0.082 3.918 18 C 0.255 3.745 19 H 0.067 0.933 20 C -0.148 4.148 21 C -0.528 4.528 22 H 0.062 0.938 23 C 0.066 3.934 24 N -0.887 5.887 25 Si 0.901 3.099 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.282 1.282 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.161 0.839 35 H 0.428 0.572 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.014 0.986 40 H 0.033 0.967 41 H 0.097 0.903 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.272 12.015 -7.093 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.088 3.912 4 C -0.214 4.214 5 C -0.065 4.065 6 C -0.056 4.056 7 C -0.052 4.052 8 N -0.098 5.098 9 C -0.062 4.062 10 C 0.026 3.974 11 N -0.289 5.289 12 C 0.294 3.706 13 O -0.376 6.376 14 C 0.276 3.724 15 O -0.413 6.413 16 N -0.282 5.282 17 C -0.061 4.061 18 C 0.156 3.844 19 H 0.085 0.915 20 C -0.206 4.206 21 C -0.567 4.567 22 H 0.081 0.919 23 C -0.137 4.137 24 N -0.525 5.525 25 Si 0.728 3.272 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.178 0.822 35 H 0.267 0.733 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.033 0.967 40 H 0.053 0.947 41 H 0.115 0.885 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.120 13.301 -6.951 22.024 hybrid contribution -0.481 -0.853 0.929 1.350 sum -16.601 12.448 -6.021 21.606 Atomic orbital electron populations 1.23173 0.77448 1.04678 1.01607 1.86099 1.22137 1.25932 1.87780 1.19076 0.90413 0.85403 0.96275 1.20955 1.00427 0.90932 1.09061 1.20906 0.92161 0.97908 0.95519 1.15709 0.92381 0.86334 1.11134 1.25500 0.93539 0.92670 0.93509 1.81253 1.07769 1.11401 1.09331 1.21266 1.01815 0.88384 0.94776 1.16827 0.86826 0.86962 1.06811 1.43067 1.20019 1.13932 1.51903 1.20997 0.81476 0.90524 0.77653 1.90681 1.66257 1.35735 1.44957 1.19508 0.83335 0.87545 0.82061 1.90731 1.68437 1.34775 1.47340 1.48275 1.17926 1.11233 1.50726 1.21969 0.98993 0.85377 0.99791 1.19186 0.89919 0.78936 0.96404 0.91525 1.22110 0.99205 1.03566 0.95751 1.21331 1.38733 1.05748 0.90871 0.91943 1.24884 0.95023 0.95578 0.98187 1.69882 1.38950 1.10194 1.33443 0.86393 0.77827 0.78288 0.84648 1.19709 1.20854 1.20841 0.92182 0.92202 0.87702 0.83870 0.84517 0.82203 0.73305 0.92732 0.91028 0.90519 0.96683 0.94746 0.88466 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.81 10.02 -19.15 -0.19 -3.00 16 3 C 0.14 1.29 6.71 -38.88 -0.26 1.03 16 4 C -0.19 -1.31 9.01 -39.53 -0.36 -1.67 16 5 C -0.04 -0.31 9.74 -39.17 -0.38 -0.69 16 6 C -0.05 -0.50 5.74 -106.86 -0.61 -1.11 16 7 C 0.26 3.00 15.32 -22.47 -0.34 2.66 16 8 N -0.42 -5.75 18.54 41.84 0.78 -4.97 16 9 C -0.04 -0.45 8.41 -38.98 -0.33 -0.78 16 10 C 0.12 1.40 6.34 -83.61 -0.53 0.87 16 11 N -0.64 -8.64 5.18 -10.22 -0.05 -8.69 16 12 C 0.51 8.38 7.61 -11.64 -0.09 8.29 16 13 O -0.50 -8.40 10.60 5.46 0.06 -8.34 16 14 C 0.50 9.99 7.72 -11.64 -0.09 9.90 16 15 O -0.53 -11.91 15.83 5.48 0.09 -11.82 16 16 N -0.55 -11.81 2.75 -175.82 -0.48 -12.29 16 17 C 0.08 1.50 8.47 59.85 0.51 2.01 16 18 C 0.25 6.35 2.62 -69.08 -0.18 6.17 16 19 H 0.07 1.88 6.91 -51.93 -0.36 1.52 16 20 C -0.15 -3.45 8.96 37.16 0.33 -3.12 16 21 C -0.53 -14.05 8.37 -34.44 -0.29 -14.34 16 22 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 23 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 24 N -0.89 -24.44 11.32 55.43 0.63 -23.81 16 25 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 30 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.14 0.55 6.27 -52.49 -0.33 0.22 16 33 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.16 2.02 6.08 -52.49 -0.32 1.70 16 35 H 0.43 5.46 8.02 -40.82 -0.33 5.14 16 36 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 37 H 0.07 1.30 6.44 -51.93 -0.33 0.96 16 38 H 0.08 1.28 5.85 -51.92 -0.30 0.98 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.03 0.74 6.67 -51.93 -0.35 0.40 16 41 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 42 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -31.39 361.28 -5.14 -36.53 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.66 Total: 3.20 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -1.73 Total: 12.01 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.87 Total: -49.77 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.15 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.39 -5.14 -36.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275963473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.888 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds