Wall clock time and date at job start Sat Apr 11 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35812 * 116.99892 * 2 1 4 4 C 1.38784 * 119.93995 * 0.02562 * 3 2 1 5 5 C 1.37815 * 120.17908 * 179.97438 * 4 3 2 6 6 C 1.39766 * 120.04851 * 359.97438 * 5 4 3 7 7 C 1.43199 * 120.06947 * 180.02562 * 6 5 4 8 8 N 6.70179 * 116.90228 * 0.02562 * 2 1 3 9 9 C 1.39681 * 119.87008 * 359.72610 * 6 5 4 10 10 C 1.38409 * 119.82420 * 0.52767 * 9 6 5 11 11 N 1.39898 * 120.02535 * 179.77380 * 10 9 6 12 12 C 1.34775 * 120.00209 * 33.60073 * 11 10 9 13 13 O 1.21389 * 119.99867 * 354.84041 * 12 11 10 14 14 C 1.49328 * 120.00112 * 175.12697 * 12 11 10 15 15 O 1.21365 * 120.00159 * 359.43232 * 14 12 11 16 16 N 1.34777 * 120.00199 * 179.43768 * 14 12 11 17 17 C 1.46501 * 120.00030 * 354.33865 * 16 14 12 18 18 C 1.46499 * 120.00204 * 174.33016 * 16 14 12 19 19 H 1.09003 * 109.47026 * 0.02562 * 18 16 14 20 20 C 1.52998 * 109.47042 * 119.99914 * 18 16 14 21 21 C 1.50699 * 109.47646 * 240.00081 * 18 16 14 22 22 H 1.08001 * 119.99866 * 0.02562 * 21 18 16 23 23 C 1.37880 * 120.00255 * 179.97438 * 21 18 16 24 24 N 1.31514 * 119.99776 * 0.02562 * 23 21 18 25 25 Si 1.86797 * 120.00089 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.46911 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47230 * 120.00207 * 25 23 21 28 28 H 1.48501 * 109.47426 * 240.00472 * 25 23 21 29 29 H 1.08996 * 109.47469 * 299.99971 * 1 2 3 30 30 H 1.09003 * 109.47508 * 60.00118 * 1 2 3 31 31 H 1.09003 * 109.47330 * 180.02562 * 1 2 3 32 32 H 1.08000 * 119.90571 * 0.02562 * 4 3 2 33 33 H 1.08002 * 119.97975 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.09139 * 180.29345 * 9 6 5 35 35 H 0.97000 * 119.99557 * 213.60484 * 11 10 9 36 36 H 1.08997 * 109.47163 * 84.04415 * 17 16 14 37 37 H 1.08993 * 109.46900 * 204.05449 * 17 16 14 38 38 H 1.09007 * 109.46347 * 324.04488 * 17 16 14 39 39 H 1.09004 * 109.47446 * 300.00691 * 20 18 16 40 40 H 1.09003 * 109.47230 * 60.00160 * 20 18 16 41 41 H 1.09003 * 109.47707 * 180.02562 * 20 18 16 42 42 H 0.96995 * 119.99757 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.2883 2.3732 0.0005 5 6 1.9089 3.6038 0.0011 6 6 3.3042 3.6840 0.0016 7 6 3.9494 4.9624 0.0027 8 7 4.4613 5.9765 0.0027 9 6 4.0682 2.5146 0.0074 10 6 3.4395 1.2816 0.0015 11 7 4.2006 0.1077 0.0025 12 6 5.3798 0.0697 0.6540 13 8 5.8263 1.0785 1.1604 14 6 6.1402 -1.2121 0.7476 15 8 5.6914 -2.2219 0.2457 16 7 7.3248 -1.2477 1.3893 17 6 7.9259 -0.0078 1.8869 18 6 8.0113 -2.5263 1.5896 19 1 7.4168 -3.3299 1.1549 20 6 9.3815 -2.4813 0.9102 21 6 8.1902 -2.7748 3.0651 22 1 7.8283 -2.0528 3.7821 23 6 8.8150 -3.9245 3.4999 24 7 9.2553 -4.8040 2.6268 25 14 9.0361 -4.2329 5.3289 26 1 8.4572 -3.1003 6.0953 27 1 8.3430 -5.4908 5.7061 28 1 10.4833 -4.3529 5.6393 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2100 2.3138 0.0014 33 1 1.3165 4.5069 0.0019 34 1 5.1466 2.5724 0.0126 35 1 3.8796 -0.6787 -0.4658 36 1 7.5058 0.2334 2.8633 37 1 9.0043 -0.1376 1.9772 38 1 7.7147 0.8034 1.1900 39 1 9.2521 -2.3015 -0.1571 40 1 9.9762 -1.6777 1.3445 41 1 9.8922 -3.4328 1.0587 42 1 9.6944 -5.6129 2.9326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275963473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:47:41 Heat of formation + Delta-G solvation = -47.233360 kcal Electronic energy + Delta-G solvation = -27767.230644 eV Core-core repulsion = 23713.351675 eV Total energy + Delta-G solvation = -4053.878969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.32766 -41.16030 -39.70475 -38.82885 -37.63262 -37.19978 -35.93012 -34.69402 -31.72269 -31.47986 -31.07154 -28.31542 -27.87705 -27.32986 -26.26733 -24.43969 -23.90329 -22.25450 -20.91416 -20.15480 -19.11470 -18.79506 -18.29943 -18.09008 -17.45427 -17.18558 -17.00836 -16.67566 -16.52157 -15.95472 -15.42559 -15.35044 -14.98904 -14.91612 -14.79445 -14.77262 -14.47156 -14.02070 -13.80953 -13.60233 -13.49795 -13.43281 -13.28473 -13.00859 -12.88812 -12.73857 -12.68408 -12.33760 -12.20451 -12.15905 -12.04206 -11.95947 -11.56387 -11.21666 -10.57954 -10.34423 -9.79850 -9.53577 -9.02254 -8.17450 -6.33853 -0.28614 -0.02681 0.52557 1.25918 1.41643 1.44004 1.55244 1.63233 1.83093 2.15008 2.20533 2.38885 2.57681 2.80356 2.89591 3.11045 3.30057 3.76149 3.87783 4.07257 4.27176 4.42602 4.43480 4.52524 4.58973 4.71554 4.73116 4.74052 4.87128 4.87558 5.00002 5.01014 5.07995 5.19518 5.25357 5.38228 5.42762 5.52375 5.61767 5.86511 5.99598 6.09344 6.26033 6.45906 6.48221 6.65218 6.75029 6.98785 7.37181 8.87309 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.002951 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.739580 B = 9485.049558 C =10386.937478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.330 6.330 3 C 0.146 3.854 4 C -0.181 4.181 5 C -0.019 4.019 6 C -0.063 4.063 7 C 0.284 3.716 8 N -0.467 5.467 9 C -0.045 4.045 10 C 0.087 3.913 11 N -0.628 5.628 12 C 0.518 3.482 13 O -0.508 6.508 14 C 0.488 3.512 15 O -0.562 6.562 16 N -0.562 5.562 17 C 0.088 3.912 18 C 0.260 3.740 19 H 0.025 0.975 20 C -0.135 4.135 21 C -0.543 4.543 22 H 0.058 0.942 23 C 0.021 3.979 24 N -0.913 5.913 25 Si 0.965 3.035 26 H -0.269 1.269 27 H -0.281 1.281 28 H -0.274 1.274 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.184 0.816 33 H 0.172 0.828 34 H 0.141 0.859 35 H 0.430 0.570 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.025 0.975 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.875 13.543 -6.660 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.096 3.904 4 C -0.200 4.200 5 C -0.039 4.039 6 C -0.067 4.067 7 C -0.030 4.030 8 N -0.143 5.143 9 C -0.067 4.067 10 C -0.007 4.007 11 N -0.274 5.274 12 C 0.301 3.699 13 O -0.384 6.384 14 C 0.270 3.730 15 O -0.443 6.443 16 N -0.293 5.293 17 C -0.054 4.054 18 C 0.159 3.841 19 H 0.043 0.957 20 C -0.194 4.194 21 C -0.582 4.582 22 H 0.076 0.924 23 C -0.180 4.180 24 N -0.551 5.551 25 Si 0.790 3.210 26 H -0.193 1.193 27 H -0.207 1.207 28 H -0.200 1.200 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.201 0.799 33 H 0.189 0.811 34 H 0.158 0.842 35 H 0.269 0.731 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.763 14.865 -6.535 24.814 hybrid contribution 0.132 -1.356 0.719 1.541 sum -18.631 13.508 -5.816 23.736 Atomic orbital electron populations 1.23524 0.75091 1.05965 1.03454 1.86089 1.24629 1.26070 1.87432 1.19200 0.89606 0.86598 0.94975 1.21360 1.02120 0.89439 1.07057 1.21309 0.90916 0.99484 0.92225 1.15721 0.93512 0.84741 1.12749 1.25714 0.92562 0.92529 0.92173 1.81271 1.08951 1.12900 1.11193 1.21080 1.01156 0.89130 0.95380 1.16972 0.87834 0.85899 1.09988 1.42848 1.18996 1.14922 1.50667 1.20092 0.82393 0.88703 0.78710 1.90677 1.66771 1.35102 1.45819 1.20174 0.83000 0.88846 0.80950 1.90698 1.68980 1.36385 1.48250 1.48229 1.18623 1.10970 1.51444 1.22044 0.98810 0.84510 1.00073 1.18815 0.90105 0.79655 0.95566 0.95748 1.21917 0.98295 1.02754 0.96418 1.21541 1.38946 1.06013 0.91651 0.92383 1.25665 0.94665 0.95295 1.02326 1.70000 1.39311 1.10544 1.35256 0.85407 0.78027 0.77998 0.79597 1.19326 1.20721 1.19951 0.90605 0.89904 0.87001 0.79919 0.81081 0.84175 0.73113 0.92926 0.90874 0.88718 0.95559 0.93427 0.90719 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.33 -5.23 10.02 -91.44 -0.92 -6.15 16 3 C 0.15 2.35 6.71 22.73 0.15 2.50 16 4 C -0.18 -1.62 9.01 22.30 0.20 -1.42 16 5 C -0.02 -0.18 9.74 22.54 0.22 0.04 16 6 C -0.06 -1.09 5.74 -21.32 -0.12 -1.21 16 7 C 0.28 6.16 15.32 88.33 1.35 7.51 16 8 N -0.47 -12.47 18.54 19.00 0.35 -12.12 16 9 C -0.04 -0.98 8.41 22.66 0.19 -0.79 16 10 C 0.09 1.93 6.34 38.22 0.24 2.17 16 11 N -0.63 -16.94 5.18 -304.60 -1.58 -18.52 16 12 C 0.52 17.32 7.61 87.23 0.66 17.98 16 13 O -0.51 -17.09 10.60 -3.37 -0.04 -17.13 16 14 C 0.49 20.33 7.72 87.23 0.67 21.01 16 15 O -0.56 -26.19 15.83 -3.29 -0.05 -26.24 16 16 N -0.56 -24.73 2.75 -828.52 -2.28 -27.01 16 17 C 0.09 3.24 8.47 127.77 1.08 4.32 16 18 C 0.26 13.37 2.62 44.24 0.12 13.48 16 19 H 0.02 1.46 6.91 -2.39 -0.02 1.44 16 20 C -0.14 -6.46 8.96 71.98 0.64 -5.81 16 21 C -0.54 -29.47 8.37 25.60 0.21 -29.25 16 22 H 0.06 3.13 7.65 -2.91 -0.02 3.11 16 23 C 0.02 1.12 5.30 84.66 0.45 1.57 16 24 N -0.91 -51.31 11.32 21.45 0.24 -51.07 16 25 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 H 0.08 0.24 7.65 -2.39 -0.02 0.22 16 30 H 0.08 0.14 7.65 -2.39 -0.02 0.12 16 31 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.18 0.23 6.27 -2.91 -0.02 0.21 16 33 H 0.17 0.61 8.06 -2.91 -0.02 0.58 16 34 H 0.14 3.61 6.08 -2.91 -0.02 3.59 16 35 H 0.43 11.13 8.02 -92.71 -0.74 10.39 16 36 H 0.05 1.95 8.13 -2.39 -0.02 1.93 16 37 H 0.07 2.64 6.44 -2.39 -0.02 2.63 16 38 H 0.09 3.15 5.85 -2.38 -0.01 3.14 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.05 2.09 6.67 -2.39 -0.02 2.07 16 41 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 42 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -70.74 361.28 5.31 -65.44 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.35 Total: 14.73 kcal Atomic # 6 Polarization: 26.10 SS G_CDS: 7.19 Total: 33.29 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -3.26 Total: -108.72 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -1.00 Total: -49.51 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -70.74 5.31 -65.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275963473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.202 kcal (2) G-P(sol) polarization free energy of solvation -70.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds