Wall clock time and date at job start Sat Apr 11 2020 02:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47064 * 2 1 4 4 C 1.36942 * 120.00065 * 275.30911 * 3 2 1 5 5 H 1.08006 * 119.99713 * 37.57709 * 4 3 2 6 6 C 1.38807 * 119.99956 * 217.58062 * 4 3 2 7 7 N 1.31621 * 120.00217 * 21.42232 * 6 4 3 8 8 Si 1.86802 * 119.99957 * 201.42323 * 6 4 3 9 9 H 1.48495 * 109.47196 * 59.99665 * 8 6 4 10 10 H 1.48504 * 109.47178 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46940 * 299.99793 * 8 6 4 12 12 C 1.46495 * 119.99938 * 95.31148 * 3 2 1 13 13 C 1.53003 * 109.46967 * 269.99738 * 12 3 2 14 14 N 1.46498 * 109.47309 * 179.97438 * 13 12 3 15 15 C 1.34776 * 120.00065 * 179.97438 * 14 13 12 16 16 O 1.21508 * 119.99925 * 0.02562 * 15 14 13 17 17 C 1.48150 * 119.99815 * 179.97438 * 15 14 13 18 18 C 1.39833 * 120.92436 * 0.02562 * 17 15 14 19 19 C 1.38125 * 119.00484 * 179.97438 * 18 17 15 20 20 N 1.31825 * 120.89721 * 359.97438 * 19 18 17 21 21 C 1.31801 * 122.04986 * 0.02562 * 20 19 18 22 22 C 1.38168 * 120.89488 * 359.97438 * 21 20 19 23 23 C 1.50692 * 120.50402 * 180.02562 * 22 21 20 24 24 F 1.39902 * 109.47029 * 359.97438 * 23 22 21 25 25 F 1.39907 * 109.47340 * 119.97912 * 23 22 21 26 26 F 1.39894 * 109.47612 * 239.98457 * 23 22 21 27 27 H 1.09006 * 109.46944 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47518 * 300.00204 * 1 2 3 29 29 H 1.09002 * 109.47362 * 60.00293 * 1 2 3 30 30 H 1.09000 * 109.47084 * 239.99912 * 2 1 3 31 31 H 1.09001 * 109.47001 * 120.00395 * 2 1 3 32 32 H 0.97001 * 120.00045 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47487 * 150.00224 * 12 3 2 34 34 H 1.08995 * 109.47369 * 29.99887 * 12 3 2 35 35 H 1.09000 * 109.47348 * 59.99851 * 13 12 3 36 36 H 1.09003 * 109.47197 * 299.99942 * 13 12 3 37 37 H 0.97004 * 119.99726 * 0.02562 * 14 13 12 38 38 H 1.08001 * 120.50139 * 359.97438 * 18 17 15 39 39 H 1.08006 * 119.55579 * 180.02562 * 19 18 17 40 40 H 1.08004 * 119.55204 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9278 -1.9628 6 6 3.2111 2.9289 -1.3729 7 7 4.3026 2.7980 -0.6490 8 14 3.0994 4.2794 -2.6585 9 1 1.9627 5.1784 -2.3346 10 1 4.3623 5.0606 -2.6670 11 1 2.8845 3.6724 -3.9967 12 6 2.3732 2.0326 1.2632 13 6 1.1425 2.7382 1.8365 14 7 1.4972 3.3892 3.1001 15 6 0.5648 4.0766 3.7890 16 8 -0.5701 4.1560 3.3622 17 6 0.9233 4.7344 5.0671 18 6 2.2232 4.6549 5.5762 19 6 2.5141 5.2837 6.7712 20 7 1.5864 5.9512 7.4282 21 6 0.3496 6.0509 6.9839 22 6 -0.0283 5.4527 5.7971 23 6 -1.4447 5.5728 5.2970 24 9 -2.1950 6.3341 6.1996 25 9 -1.4461 6.1982 4.0455 26 9 -2.0084 4.2976 5.1817 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.0491 3.4027 -0.7835 33 1 3.1616 2.7641 1.0860 34 1 2.7255 1.2833 1.9721 35 1 0.3540 2.0068 2.0138 36 1 0.7903 3.4876 1.1277 37 1 2.4033 3.3260 3.4406 38 1 2.9884 4.1101 5.0432 39 1 3.5153 5.2284 7.1725 40 1 -0.3785 6.6077 7.5552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663442820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:47:59 Heat of formation + Delta-G solvation = -123.319074 kcal Electronic energy + Delta-G solvation = -28981.596505 eV Core-core repulsion = 24382.561472 eV Total energy + Delta-G solvation = -4599.035034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.02582 -47.61122 -47.34704 -40.98523 -39.11201 -36.43468 -34.47193 -33.41877 -32.32929 -31.95200 -29.73625 -27.84502 -26.51220 -25.12830 -24.20290 -22.90436 -21.90404 -20.84411 -20.32372 -18.95211 -18.34427 -18.31094 -17.77744 -16.86519 -16.58416 -15.63326 -15.46970 -15.33856 -15.06763 -14.92755 -14.38726 -14.24771 -14.18571 -13.95269 -13.86007 -13.74932 -13.66808 -13.52699 -13.31607 -13.13634 -12.75862 -12.44997 -12.16275 -12.01383 -11.59025 -11.18484 -10.80648 -10.74132 -10.60300 -10.47207 -10.43420 -10.15175 -9.99436 -9.92595 -9.86781 -9.71742 -8.75993 -8.55718 -6.70551 -5.91497 -3.49996 0.10321 0.41345 2.55407 2.70987 3.06445 3.32375 3.35004 3.37325 3.41990 3.62428 3.89455 3.96835 4.19301 4.33341 4.42513 4.47929 4.68435 4.76500 5.09288 5.20690 5.24629 5.38050 5.46050 5.90233 5.92508 5.99121 6.06635 6.30821 6.33279 6.41253 6.60126 6.62899 6.86041 6.88950 7.10553 7.27998 7.40193 7.59238 7.73825 8.19107 8.40699 9.06908 9.68601 10.26284 11.08955 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.003410 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.718885 B = 8210.234203 C = 8552.394061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.263 4.263 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.279 1.279 12 C 0.137 3.863 13 C 0.095 3.905 14 N -0.702 5.702 15 C 0.536 3.464 16 O -0.514 6.514 17 C -0.029 4.029 18 C -0.145 4.145 19 C 0.129 3.871 20 N -0.470 5.470 21 C 0.146 3.854 22 C -0.194 4.194 23 C 0.523 3.477 24 F -0.185 7.185 25 F -0.160 7.160 26 F -0.162 7.162 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.256 0.744 33 H 0.099 0.901 34 H 0.030 0.970 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.398 0.602 38 H 0.155 0.845 39 H 0.174 0.826 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 3.971 16.555 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.299 5.299 4 C -0.393 4.393 5 H 0.080 0.920 6 C -0.185 4.185 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.205 1.205 12 C 0.010 3.990 13 C -0.029 4.029 14 N -0.353 5.353 15 C 0.320 3.680 16 O -0.390 6.390 17 C -0.041 4.041 18 C -0.165 4.165 19 C -0.028 4.028 20 N -0.179 5.179 21 C -0.011 4.011 22 C -0.199 4.199 23 C 0.468 3.532 24 F -0.166 7.166 25 F -0.142 7.142 26 F -0.143 7.143 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.232 0.768 38 H 0.172 0.828 39 H 0.191 0.809 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.111 4.456 16.920 17.974 hybrid contribution -0.020 0.366 -1.358 1.406 sum -4.131 4.822 15.563 16.808 Atomic orbital electron populations 1.22390 0.99834 0.99166 1.01420 1.20890 0.91789 0.86862 0.98963 1.43594 1.76019 1.08305 1.01984 1.18998 1.04885 1.21402 0.93977 0.92033 1.25170 0.94090 1.01132 0.98110 1.69980 1.03125 1.37353 1.42549 0.86469 0.77021 0.82273 0.81680 1.20730 1.21537 1.20526 1.21061 0.94388 0.96998 0.86595 1.22657 1.01584 0.96738 0.81948 1.46024 1.12701 1.52030 1.24509 1.18091 0.86083 0.80189 0.83662 1.90876 1.19488 1.59910 1.68721 1.20471 0.93726 0.94884 0.95007 1.22501 0.95786 1.00529 0.97711 1.23102 0.99188 0.90016 0.90479 1.67780 1.01051 1.15889 1.33153 1.22763 0.93715 0.93650 0.90966 1.21250 0.94256 1.04828 0.99539 1.17677 0.85228 0.74671 0.75660 1.93146 1.78899 1.76639 1.67933 1.93267 1.96677 1.82344 1.41865 1.93249 1.86372 1.38902 1.95751 0.94387 0.93685 0.93064 0.93483 0.94707 0.93420 0.88330 0.95185 0.92422 0.91181 0.76758 0.82755 0.80871 0.80729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 10.21 37.16 0.38 -2.66 16 2 C 0.14 2.85 6.44 -4.04 -0.03 2.83 16 3 N -0.58 -13.55 2.43 -173.24 -0.42 -13.97 16 4 C -0.26 -6.88 9.45 -15.06 -0.14 -7.02 16 5 H 0.06 1.63 7.92 -52.48 -0.42 1.21 16 6 C 0.02 0.41 4.95 -17.43 -0.09 0.32 16 7 N -0.89 -23.92 11.47 55.49 0.64 -23.28 16 8 Si 0.90 20.95 29.60 -169.99 -5.03 15.92 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.14 2.88 5.45 -4.04 -0.02 2.85 16 13 C 0.10 1.82 6.00 -4.04 -0.02 1.80 16 14 N -0.70 -10.81 5.51 -61.15 -0.34 -11.15 16 15 C 0.54 8.61 7.63 -12.19 -0.09 8.52 16 16 O -0.51 -10.02 11.59 5.36 0.06 -9.96 16 17 C -0.03 -0.37 5.88 -104.65 -0.62 -0.99 16 18 C -0.14 -1.31 9.62 -39.03 -0.38 -1.69 16 19 C 0.13 1.03 11.17 -17.60 -0.20 0.84 16 20 N -0.47 -4.64 10.33 -13.30 -0.14 -4.78 16 21 C 0.15 1.48 10.59 -17.59 -0.19 1.29 16 22 C -0.19 -2.41 5.41 -104.07 -0.56 -2.97 16 23 C 0.52 7.39 2.78 36.00 0.10 7.49 16 24 F -0.18 -2.22 16.01 2.25 0.04 -2.18 16 25 F -0.16 -2.65 15.13 2.25 0.03 -2.62 16 26 F -0.16 -2.59 15.13 2.25 0.03 -2.56 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.82 6.64 -51.93 -0.34 0.47 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 32 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 33 H 0.10 2.32 5.52 -51.93 -0.29 2.03 16 34 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 35 H 0.06 1.13 6.64 -51.93 -0.34 0.79 16 36 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.40 4.89 6.62 -40.82 -0.27 4.62 16 38 H 0.15 1.01 6.54 -52.49 -0.34 0.67 16 39 H 0.17 0.78 8.06 -52.48 -0.42 0.35 16 40 H 0.18 1.36 7.17 -52.48 -0.38 0.98 16 LS Contribution 345.74 15.07 5.21 5.21 Total: -1.00 -30.97 345.74 -6.21 -37.18 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.44 Total: 1.58 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: -1.85 Total: 10.61 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.26 Total: -53.18 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.06 Total: -9.96 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 0.10 Total: -7.36 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.97 -6.21 -37.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663442820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.140 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds