Wall clock time and date at job start Sat Apr 11 2020 02:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47064 * 2 1 4 4 C 1.36942 * 120.00065 * 275.30911 * 3 2 1 5 5 H 1.08006 * 119.99713 * 37.57709 * 4 3 2 6 6 C 1.38807 * 119.99956 * 217.58062 * 4 3 2 7 7 N 1.31621 * 120.00217 * 21.42232 * 6 4 3 8 8 Si 1.86802 * 119.99957 * 201.42323 * 6 4 3 9 9 H 1.48495 * 109.47196 * 59.99665 * 8 6 4 10 10 H 1.48504 * 109.47178 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46940 * 299.99793 * 8 6 4 12 12 C 1.46495 * 119.99938 * 95.31148 * 3 2 1 13 13 C 1.53003 * 109.46967 * 269.99738 * 12 3 2 14 14 N 1.46498 * 109.47309 * 179.97438 * 13 12 3 15 15 C 1.34776 * 120.00065 * 179.97438 * 14 13 12 16 16 O 1.21508 * 119.99925 * 0.02562 * 15 14 13 17 17 C 1.48150 * 119.99815 * 179.97438 * 15 14 13 18 18 C 1.39833 * 120.92436 * 0.02562 * 17 15 14 19 19 C 1.38125 * 119.00484 * 179.97438 * 18 17 15 20 20 N 1.31825 * 120.89721 * 359.97438 * 19 18 17 21 21 C 1.31801 * 122.04986 * 0.02562 * 20 19 18 22 22 C 1.38168 * 120.89488 * 359.97438 * 21 20 19 23 23 C 1.50692 * 120.50402 * 180.02562 * 22 21 20 24 24 F 1.39902 * 109.47029 * 359.97438 * 23 22 21 25 25 F 1.39907 * 109.47340 * 119.97912 * 23 22 21 26 26 F 1.39894 * 109.47612 * 239.98457 * 23 22 21 27 27 H 1.09006 * 109.46944 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47518 * 300.00204 * 1 2 3 29 29 H 1.09002 * 109.47362 * 60.00293 * 1 2 3 30 30 H 1.09000 * 109.47084 * 239.99912 * 2 1 3 31 31 H 1.09001 * 109.47001 * 120.00395 * 2 1 3 32 32 H 0.97001 * 120.00045 * 179.97438 * 7 6 4 33 33 H 1.09002 * 109.47487 * 150.00224 * 12 3 2 34 34 H 1.08995 * 109.47369 * 29.99887 * 12 3 2 35 35 H 1.09000 * 109.47348 * 59.99851 * 13 12 3 36 36 H 1.09003 * 109.47197 * 299.99942 * 13 12 3 37 37 H 0.97004 * 119.99726 * 0.02562 * 14 13 12 38 38 H 1.08001 * 120.50139 * 359.97438 * 18 17 15 39 39 H 1.08006 * 119.55579 * 180.02562 * 19 18 17 40 40 H 1.08004 * 119.55204 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1809 5 1 1.4105 1.9278 -1.9628 6 6 3.2111 2.9289 -1.3729 7 7 4.3026 2.7980 -0.6490 8 14 3.0994 4.2794 -2.6585 9 1 1.9627 5.1784 -2.3346 10 1 4.3623 5.0606 -2.6670 11 1 2.8845 3.6724 -3.9967 12 6 2.3732 2.0326 1.2632 13 6 1.1425 2.7382 1.8365 14 7 1.4972 3.3892 3.1001 15 6 0.5648 4.0766 3.7890 16 8 -0.5701 4.1560 3.3622 17 6 0.9233 4.7344 5.0671 18 6 2.2232 4.6549 5.5762 19 6 2.5141 5.2837 6.7712 20 7 1.5864 5.9512 7.4282 21 6 0.3496 6.0509 6.9839 22 6 -0.0283 5.4527 5.7971 23 6 -1.4447 5.5728 5.2970 24 9 -2.1950 6.3341 6.1996 25 9 -1.4461 6.1982 4.0455 26 9 -2.0084 4.2976 5.1817 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.0491 3.4027 -0.7835 33 1 3.1616 2.7641 1.0860 34 1 2.7255 1.2833 1.9721 35 1 0.3540 2.0068 2.0138 36 1 0.7903 3.4876 1.1277 37 1 2.4033 3.3260 3.4406 38 1 2.9884 4.1101 5.0432 39 1 3.5153 5.2284 7.1725 40 1 -0.3785 6.6077 7.5552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663442820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:47:58 Heat of formation + Delta-G solvation = -142.861550 kcal Electronic energy + Delta-G solvation = -28982.443931 eV Core-core repulsion = 24382.561472 eV Total energy + Delta-G solvation = -4599.882459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.13214 -48.68997 -48.53811 -41.90335 -40.28806 -38.13398 -35.90860 -34.33394 -33.84176 -33.18487 -31.28818 -29.44759 -27.57446 -26.40223 -25.67598 -23.96871 -23.24601 -22.23986 -21.89901 -20.01582 -19.44831 -19.42191 -18.92598 -18.38351 -17.76622 -17.08278 -16.65150 -16.61098 -16.39809 -15.83535 -15.82967 -15.47065 -15.40548 -15.30403 -15.05742 -14.99453 -14.95500 -14.73408 -14.53902 -14.29917 -14.11446 -13.95319 -13.79441 -13.25930 -13.02658 -12.91481 -12.63428 -12.41915 -12.31949 -12.04669 -11.71132 -11.64036 -11.42746 -11.34790 -10.79960 -10.60598 -10.55549 -10.15540 -8.60559 -7.87670 -5.49731 -0.79305 -0.33777 1.43694 1.47501 1.53162 1.53625 1.64211 1.86702 2.45202 2.48742 2.62644 2.95159 3.19010 3.24660 3.29837 3.37382 3.47736 3.75479 3.84179 3.98097 4.29046 4.34930 4.43715 4.46489 4.47394 4.66563 4.73017 4.80834 4.83990 5.08007 5.15617 5.24859 5.28466 5.29104 5.55593 5.64592 5.72816 6.33121 6.45704 6.54979 6.97348 7.15013 7.81692 8.33384 9.08403 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.014013 B = 0.003410 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.718885 B = 8210.234203 C = 8552.394061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 N -0.597 5.597 4 C -0.274 4.274 5 H 0.050 0.950 6 C -0.022 4.022 7 N -0.907 5.907 8 Si 0.947 3.053 9 H -0.288 1.288 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.145 3.855 13 C 0.119 3.881 14 N -0.693 5.693 15 C 0.534 3.466 16 O -0.555 6.555 17 C -0.051 4.051 18 C -0.131 4.131 19 C 0.143 3.857 20 N -0.477 5.477 21 C 0.153 3.847 22 C -0.208 4.208 23 C 0.518 3.482 24 F -0.174 7.174 25 F -0.180 7.180 26 F -0.178 7.178 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.255 0.745 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.032 0.968 37 H 0.415 0.585 38 H 0.182 0.818 39 H 0.218 0.782 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.352 4.009 18.522 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.318 5.318 4 C -0.405 4.405 5 H 0.068 0.932 6 C -0.221 4.221 7 N -0.550 5.550 8 Si 0.775 3.225 9 H -0.215 1.215 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.017 3.983 13 C -0.007 4.007 14 N -0.345 5.345 15 C 0.320 3.680 16 O -0.434 6.434 17 C -0.062 4.062 18 C -0.151 4.151 19 C -0.014 4.014 20 N -0.185 5.185 21 C -0.004 4.004 22 C -0.213 4.213 23 C 0.463 3.537 24 F -0.155 7.155 25 F -0.162 7.162 26 F -0.159 7.159 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.253 0.747 38 H 0.199 0.801 39 H 0.234 0.766 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.784 4.488 18.915 19.638 hybrid contribution -0.422 0.329 -1.893 1.967 sum -3.205 4.817 17.022 17.978 Atomic orbital electron populations 1.22228 0.98159 1.00825 1.00319 1.21009 0.92997 0.85413 0.99397 1.43834 1.76361 1.09617 1.01980 1.19119 1.04505 1.21994 0.94837 0.93249 1.25669 0.93982 1.02554 0.99845 1.70053 1.03405 1.37898 1.43672 0.85682 0.76565 0.80128 0.80112 1.21505 1.21195 1.20145 1.20949 0.94135 0.96923 0.86251 1.22072 1.00443 0.95458 0.82744 1.45757 1.13685 1.51828 1.23276 1.18602 0.85348 0.79486 0.84560 1.90853 1.21241 1.61253 1.70042 1.20240 0.95662 0.96378 0.93896 1.22833 0.94504 0.99853 0.97944 1.23826 1.00418 0.87754 0.89353 1.67906 1.01039 1.16202 1.33354 1.23032 0.94391 0.92944 0.89986 1.21191 0.92950 1.06412 1.00727 1.17962 0.86543 0.74009 0.75204 1.93155 1.78865 1.76241 1.67250 1.93217 1.96850 1.82635 1.43455 1.93206 1.86807 1.40038 1.95834 0.91294 0.94060 0.94825 0.94484 0.92740 0.93547 0.90558 0.93139 0.92929 0.94919 0.74750 0.80107 0.76566 0.78856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.50 10.21 71.98 0.73 -4.76 16 2 C 0.14 5.44 6.44 86.38 0.56 6.00 16 3 N -0.60 -28.01 2.43 -702.02 -1.71 -29.72 16 4 C -0.27 -14.53 9.45 84.03 0.79 -13.74 16 5 H 0.05 2.68 7.92 -2.91 -0.02 2.66 16 6 C -0.02 -1.16 4.95 84.86 0.42 -0.74 16 7 N -0.91 -48.89 11.47 21.65 0.25 -48.64 16 8 Si 0.95 43.43 29.60 68.60 2.03 45.47 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 10 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 C 0.14 6.02 5.45 86.38 0.47 6.49 16 13 C 0.12 4.60 6.00 86.38 0.52 5.12 16 14 N -0.69 -21.00 5.51 -465.68 -2.57 -23.56 16 15 C 0.53 17.16 7.63 86.88 0.66 17.82 16 16 O -0.55 -22.38 11.59 -3.74 -0.04 -22.42 16 17 C -0.05 -1.22 5.88 -19.88 -0.12 -1.33 16 18 C -0.13 -1.95 9.62 22.63 0.22 -1.73 16 19 C 0.14 1.69 11.17 84.67 0.95 2.63 16 20 N -0.48 -7.78 10.33 -196.00 -2.03 -9.81 16 21 C 0.15 2.76 10.59 84.68 0.90 3.65 16 22 C -0.21 -4.98 5.41 -19.50 -0.11 -5.08 16 23 C 0.52 14.84 2.78 71.23 0.20 15.04 16 24 F -0.17 -4.13 16.01 44.97 0.72 -3.41 16 25 F -0.18 -6.20 15.13 44.97 0.68 -5.52 16 26 F -0.18 -5.88 15.13 44.97 0.68 -5.19 16 27 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.04 1.47 6.64 -2.39 -0.02 1.45 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 30 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 31 H 0.05 1.93 7.83 -2.39 -0.02 1.91 16 32 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 33 H 0.08 3.59 5.52 -2.39 -0.01 3.58 16 34 H 0.05 1.87 7.86 -2.39 -0.02 1.85 16 35 H 0.05 2.09 6.64 -2.39 -0.02 2.07 16 36 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.41 9.46 6.62 -92.71 -0.61 8.85 16 38 H 0.18 1.63 6.54 -2.91 -0.02 1.61 16 39 H 0.22 0.65 8.06 -2.91 -0.02 0.63 16 40 H 0.19 2.59 7.17 -2.91 -0.02 2.57 16 Total: -1.00 -68.86 345.74 4.70 -64.16 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.49 Total: 9.28 kcal Atomic # 6 Polarization: 23.18 SS G_CDS: 6.19 Total: 29.37 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -6.05 Total: -111.73 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.04 Total: -22.42 kcal Atomic # 9 Polarization: -16.20 SS G_CDS: 2.08 Total: -14.12 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.47 kcal Total: -68.86 4.70 -64.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663442820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.705 kcal (2) G-P(sol) polarization free energy of solvation -68.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds