Wall clock time and date at job start Sat Apr 11 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34756 * 116.99991 * 2 1 4 4 O 1.21524 * 120.00046 * 0.02562 * 3 2 1 5 5 C 1.47367 * 120.00254 * 179.97438 * 3 2 1 6 6 C 1.39759 * 120.20214 * 5.59049 * 5 3 2 7 7 C 1.37764 * 119.91210 * 180.27610 * 6 5 3 8 8 C 1.38592 * 120.34009 * 359.69613 * 7 6 5 9 9 C 1.38008 * 120.41872 * 0.02749 * 8 7 6 10 10 C 1.38854 * 120.07528 * 359.97431 * 9 8 7 11 11 N 1.39235 * 120.16821 * 180.02562 * 10 9 8 12 12 C 1.34779 * 120.00282 * 35.23194 * 11 10 9 13 13 O 1.21580 * 119.99810 * 355.44059 * 12 11 10 14 14 N 1.34774 * 120.00038 * 175.16528 * 12 11 10 15 15 C 1.46499 * 119.99933 * 180.27490 * 14 12 11 16 16 C 1.50702 * 109.47186 * 90.00357 * 15 14 12 17 17 H 1.08004 * 119.99680 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00533 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99555 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00177 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47262 * 60.00296 * 20 18 16 22 22 H 1.48505 * 109.47192 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47183 * 299.99712 * 20 18 16 24 24 C 1.46496 * 120.00078 * 0.28022 * 14 12 11 25 25 C 1.53001 * 109.47529 * 89.99900 * 24 14 12 26 26 C 1.47196 * 109.47113 * 179.97438 * 25 24 14 27 27 N 7.12937 * 74.89180 * 25.44189 * 2 1 3 28 28 H 1.08997 * 109.47348 * 59.99902 * 1 2 3 29 29 H 1.08998 * 109.47016 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46738 * 300.00032 * 1 2 3 31 31 H 1.07996 * 120.04801 * 359.97438 * 6 5 3 32 32 H 1.08002 * 119.83265 * 179.72169 * 7 6 5 33 33 H 1.08003 * 119.79136 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.95805 * 179.97438 * 9 8 7 35 35 H 0.97009 * 120.00240 * 215.23860 * 11 10 9 36 36 H 1.08997 * 109.47467 * 210.00063 * 15 14 12 37 37 H 1.08999 * 109.47477 * 330.00396 * 15 14 12 38 38 H 0.97000 * 119.99372 * 179.97438 * 19 18 16 39 39 H 1.09008 * 109.46985 * 209.99966 * 24 14 12 40 40 H 1.08995 * 109.47464 * 329.99539 * 24 14 12 41 41 H 1.08996 * 109.46748 * 300.00166 * 25 24 14 42 42 H 1.09003 * 109.46888 * 59.99651 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2199 0.0005 5 6 3.5355 1.2779 0.0006 6 6 4.3006 0.1142 -0.1166 7 6 5.6759 0.1927 -0.1096 8 6 6.3064 1.4214 0.0067 9 6 5.5645 2.5798 0.1174 10 6 4.1772 2.5208 0.1124 11 7 3.4267 3.6883 0.2235 12 6 3.8663 4.8286 -0.3449 13 8 4.9561 4.8588 -0.8830 14 7 3.0954 5.9339 -0.3216 15 6 3.5706 7.1717 -0.9446 16 6 3.1373 7.2062 -2.3876 17 1 2.5655 6.3878 -2.7995 18 6 3.4717 8.2821 -3.1823 19 7 4.1685 9.2786 -2.6809 20 14 2.9353 8.3246 -4.9711 21 1 1.4531 8.2712 -5.0448 22 1 3.4179 9.5788 -5.6031 23 1 3.5089 7.1573 -5.6877 24 6 1.7822 5.8975 0.3269 25 6 1.9303 6.2807 1.8007 26 6 0.6108 6.2448 2.4520 27 7 -0.4062 6.2155 2.9569 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.8143 -0.8458 -0.2075 32 1 6.2660 -0.7078 -0.1957 33 1 7.3852 1.4728 0.0108 34 1 6.0635 3.5333 0.2081 35 1 2.5875 3.6811 0.7100 36 1 3.1496 8.0283 -0.4184 37 1 4.6585 7.2111 -0.8910 38 1 4.4041 10.0353 -3.2401 39 1 1.1137 6.6030 -0.1666 40 1 1.3681 4.8920 0.2528 41 1 2.5989 5.5753 2.2940 42 1 2.3444 7.2863 1.8747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033707913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:48:50 Heat of formation + Delta-G solvation = -43.114281 kcal Electronic energy + Delta-G solvation = -28333.501460 eV Core-core repulsion = 24279.801108 eV Total energy + Delta-G solvation = -4053.700353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.04102 -39.93702 -38.49875 -36.87691 -36.58666 -35.38452 -34.44942 -32.78220 -31.57724 -30.89876 -29.68290 -27.89388 -27.03818 -24.20444 -24.00751 -23.49855 -22.11805 -21.08877 -19.46410 -18.15215 -17.85559 -17.61499 -17.10182 -16.81510 -16.47417 -16.41859 -15.46229 -15.09817 -14.92458 -14.69333 -14.36860 -14.25750 -14.05075 -13.67908 -13.53652 -13.49173 -13.05149 -12.71078 -12.53901 -12.39476 -12.34350 -12.21399 -12.00690 -11.76315 -11.54623 -11.27119 -11.00597 -10.97112 -10.88419 -10.66635 -10.59895 -10.18159 -10.14913 -9.70797 -9.41341 -9.03575 -8.45561 -8.18472 -7.78669 -6.07717 -4.11780 0.64386 1.36401 2.47466 2.54724 2.74425 2.83215 3.02741 3.32178 3.36238 3.40459 3.55185 3.88034 3.95791 4.40613 4.51993 4.58375 4.80827 4.92149 4.97502 5.01198 5.04219 5.14943 5.22143 5.27304 5.34605 5.37113 5.44215 5.48320 5.80472 5.87054 6.07576 6.13792 6.16870 6.23564 6.44521 6.58441 6.68797 7.03127 7.25537 7.37529 7.57186 7.59366 7.62705 7.89731 8.17870 8.40005 8.87702 9.08064 9.53651 11.00255 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.009105 B = 0.004198 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.388959 B = 6668.811165 C = 7827.152257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.515 3.485 4 O -0.510 6.510 5 C -0.178 4.178 6 C -0.043 4.043 7 C -0.163 4.163 8 C -0.060 4.060 9 C -0.138 4.138 10 C 0.252 3.748 11 N -0.685 5.685 12 C 0.700 3.300 13 O -0.561 6.561 14 N -0.600 5.600 15 C 0.259 3.741 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.112 3.888 25 C -0.051 4.051 26 C 0.217 3.783 27 N -0.443 5.443 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.155 0.845 35 H 0.413 0.587 36 H 0.038 0.962 37 H 0.049 0.951 38 H 0.264 0.736 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 -18.225 9.078 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.361 3.639 4 O -0.400 6.400 5 C -0.183 4.183 6 C -0.062 4.062 7 C -0.182 4.182 8 C -0.079 4.079 9 C -0.158 4.158 10 C 0.152 3.848 11 N -0.337 5.337 12 C 0.402 3.598 13 O -0.437 6.437 14 N -0.334 5.334 15 C 0.140 3.860 16 C -0.568 4.568 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.015 4.015 25 C -0.093 4.093 26 C -0.101 4.101 27 N -0.121 5.121 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.172 0.828 35 H 0.255 0.745 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.121 0.879 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.691 -17.595 9.356 19.999 hybrid contribution -0.633 0.152 -1.107 1.284 sum -2.324 -17.442 8.249 19.434 Atomic orbital electron populations 1.23275 0.75992 1.03622 1.02819 1.86537 1.23513 1.32613 1.84508 1.21093 0.88878 0.81423 0.72491 1.90735 1.66828 1.35717 1.46684 1.18830 0.88860 0.94247 1.16330 1.21171 0.93821 0.96879 0.94349 1.21034 0.94169 0.98128 1.04902 1.21351 1.00390 0.91825 0.94365 1.21462 0.91551 1.00584 1.02232 1.17503 0.90946 0.83992 0.92398 1.43227 1.26416 1.07292 1.56719 1.15925 0.84544 0.79897 0.79400 1.90900 1.20717 1.82973 1.49119 1.47552 1.16306 1.12148 1.57349 1.19340 0.96832 0.77611 0.92218 1.21404 1.35079 1.04751 0.95547 0.92437 1.24885 0.94942 0.95384 0.98617 1.69910 1.38182 1.08645 1.36574 0.86577 0.78862 0.77343 0.84760 1.20280 1.21182 1.20214 1.21357 0.87345 1.03397 0.89401 1.19912 0.86687 1.06474 0.96231 1.29036 0.94784 0.92858 0.93401 1.81184 1.11875 1.09277 1.09728 0.91680 0.88095 0.91807 0.84597 0.85400 0.85135 0.82764 0.74511 0.94376 0.93276 0.92625 0.88310 0.90291 0.87851 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.36 -3.97 9.83 -40.64 -0.40 -4.37 16 3 C 0.51 6.97 7.87 34.45 0.27 7.24 16 4 O -0.51 -7.88 13.64 -19.28 -0.26 -8.14 16 5 C -0.18 -2.37 5.89 -104.83 -0.62 -2.99 16 6 C -0.04 -0.46 9.61 -39.19 -0.38 -0.84 16 7 C -0.16 -1.57 10.02 -39.62 -0.40 -1.97 16 8 C -0.06 -0.66 10.03 -39.53 -0.40 -1.06 16 9 C -0.14 -1.97 8.68 -39.44 -0.34 -2.31 16 10 C 0.25 3.82 6.30 -83.48 -0.53 3.29 16 11 N -0.68 -11.10 4.40 -14.04 -0.06 -11.16 16 12 C 0.70 13.83 8.12 -86.92 -0.71 13.12 16 13 O -0.56 -13.03 13.36 5.30 0.07 -12.96 16 14 N -0.60 -11.58 2.46 -180.81 -0.44 -12.02 16 15 C 0.26 6.17 5.16 -5.19 -0.03 6.14 16 16 C -0.53 -14.35 9.39 -34.44 -0.32 -14.67 16 17 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 20 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.11 1.67 5.09 -4.04 -0.02 1.65 16 25 C -0.05 -0.60 6.03 -29.52 -0.18 -0.77 16 26 C 0.22 2.86 15.43 -20.77 -0.32 2.54 16 27 N -0.44 -6.90 18.54 42.15 0.78 -6.12 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.14 1.14 7.62 -52.49 -0.40 0.74 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 34 H 0.15 2.47 6.23 -52.49 -0.33 2.14 16 35 H 0.41 6.09 4.35 -40.82 -0.18 5.91 16 36 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 37 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 39 H 0.10 1.54 8.07 -51.92 -0.42 1.12 16 40 H 0.08 1.15 6.30 -51.93 -0.33 0.82 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.12 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 370.99 15.07 5.59 5.59 Total: -1.00 -33.67 370.99 -6.96 -40.63 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.96 Total: 4.33 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: -2.99 Total: 12.43 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 1.01 Total: -54.05 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.59 Total: -25.46 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.67 -6.96 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033707913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.485 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds