Wall clock time and date at job start Sat Apr 11 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47542 * 2 1 4 4 C 1.53005 * 109.47246 * 240.00405 * 2 1 3 5 5 N 1.46495 * 109.47370 * 64.99813 * 4 2 1 6 6 C 1.36935 * 120.00304 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99727 * 0.02562 * 6 5 4 8 8 C 1.38806 * 120.00085 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00225 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00028 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46934 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47066 * 120.00305 * 10 8 6 13 13 H 1.48502 * 109.47115 * 240.00365 * 10 8 6 14 14 C 1.52997 * 109.47188 * 120.00353 * 2 1 3 15 15 N 1.46498 * 109.47148 * 294.99856 * 14 2 1 16 16 C 1.34774 * 120.00303 * 179.97438 * 15 14 2 17 17 O 1.21535 * 120.00007 * 0.02562 * 16 15 14 18 18 C 1.48020 * 120.00356 * 179.97438 * 16 15 14 19 19 C 1.39465 * 119.91954 * 0.02562 * 18 16 15 20 20 C 1.38444 * 120.30213 * 179.74478 * 19 18 16 21 21 C 1.38588 * 119.90428 * 359.97438 * 20 19 18 22 22 C 1.40987 * 120.06226 * 0.02562 * 21 20 19 23 23 C 1.38430 * 119.95592 * 0.02562 * 22 21 20 24 24 C 1.47827 * 105.88627 * 180.02562 * 22 21 20 25 25 O 1.21452 * 125.68935 * 180.02562 * 24 22 21 26 26 N 1.34505 * 108.62387 * 359.97438 * 24 22 21 27 27 C 1.34510 * 111.10687 * 0.02562 * 26 24 22 28 28 O 1.21422 * 125.72116 * 180.02562 * 27 26 24 29 29 H 1.09002 * 109.46982 * 299.99765 * 1 2 3 30 30 H 1.08998 * 109.46808 * 59.99575 * 1 2 3 31 31 H 1.08997 * 109.47181 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47262 * 185.00398 * 4 2 1 33 33 H 1.09005 * 109.46664 * 305.00033 * 4 2 1 34 34 H 0.97000 * 119.99672 * 0.02562 * 5 4 2 35 35 H 0.97000 * 120.00300 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47198 * 174.99855 * 14 2 1 37 37 H 1.09000 * 109.47236 * 55.00185 * 14 2 1 38 38 H 0.97002 * 120.00006 * 359.97438 * 15 14 2 39 39 H 1.07998 * 119.84854 * 359.72214 * 19 18 16 40 40 H 1.08006 * 120.04551 * 179.97438 * 20 19 18 41 41 H 1.08001 * 120.19066 * 180.02562 * 23 22 21 42 42 H 0.97000 * 124.44212 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6525 0.0354 -2.4424 6 6 2.0011 -0.4206 -3.6856 7 1 2.5614 -1.3384 -3.7866 8 6 1.6334 0.2960 -4.8161 9 7 0.9501 1.4141 -4.6931 10 14 2.1084 -0.3265 -6.5121 11 1 2.8675 -1.5959 -6.3788 12 1 0.8811 -0.5661 -7.3131 13 1 2.9537 0.6871 -7.1927 14 6 2.0400 -0.7213 1.2492 15 7 1.6524 0.0352 2.4423 16 6 1.9955 -0.4138 3.6659 17 8 2.6269 -1.4460 3.7794 18 6 1.6045 0.3509 4.8714 19 6 0.8805 1.5356 4.7393 20 6 0.5061 2.2543 5.8617 21 6 0.8512 1.7953 7.1230 22 6 1.5830 0.5984 7.2632 23 6 1.9575 -0.1184 6.1397 24 6 1.7745 0.4091 8.7167 25 8 2.3626 -0.5162 9.2393 26 7 1.1897 1.4329 9.3640 27 6 0.6233 2.2928 8.4985 28 8 0.0260 3.3073 8.7957 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2952 34 1 1.1489 0.8595 -2.3517 35 1 0.6935 1.9151 -5.4831 36 1 3.1263 -0.7996 1.2055 37 1 1.6054 -1.7199 1.2950 38 1 1.1489 0.8593 2.3518 39 1 0.6111 1.8941 3.7568 40 1 -0.0542 3.1715 5.7545 41 1 2.5178 -1.0360 6.2427 42 1 1.1774 1.5370 10.3283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753638708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:48:05 Heat of formation + Delta-G solvation = -48.258794 kcal Electronic energy + Delta-G solvation = -26353.254154 eV Core-core repulsion = 22299.330718 eV Total energy + Delta-G solvation = -4053.923435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.81311 -40.42425 -39.22195 -38.46583 -36.95603 -36.22546 -34.59671 -32.85087 -31.87186 -31.73647 -30.06678 -27.01815 -26.01730 -25.55824 -24.58932 -23.31586 -22.43085 -21.10243 -20.91156 -20.09505 -18.56376 -18.45151 -17.79585 -17.04295 -17.00858 -16.50446 -16.10881 -15.79250 -15.66011 -15.18651 -14.76358 -14.64933 -14.59966 -14.46806 -14.20926 -13.73515 -13.65270 -13.30003 -13.09357 -12.70656 -12.47584 -12.38540 -12.13587 -11.25305 -11.13698 -11.04527 -11.00521 -10.98719 -10.79524 -10.66751 -10.54517 -10.29860 -10.02554 -9.95081 -9.89031 -9.73372 -9.25529 -8.92847 -6.97343 -5.81762 -3.10313 -0.75195 0.23167 1.13555 1.95300 2.32778 2.42168 2.68369 3.06672 3.15664 3.40634 3.46890 3.48729 3.62329 3.90519 4.13526 4.27716 4.49688 4.53742 4.56240 4.93035 5.10088 5.10447 5.19042 5.23458 5.26918 5.37018 5.45598 5.53111 5.69385 5.74260 5.85095 5.85805 5.87352 5.99320 6.12268 6.25377 6.33031 6.53932 6.57372 6.69270 6.78409 7.12153 7.17593 7.67034 7.84663 8.37338 9.48919 10.05399 10.39940 11.41213 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.030552 B = 0.001797 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.248177 B =15573.794160 C =16332.141515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.125 3.875 15 N -0.714 5.714 16 C 0.552 3.448 17 O -0.526 6.526 18 C -0.103 4.103 19 C -0.061 4.061 20 C -0.047 4.047 21 C -0.122 4.122 22 C -0.149 4.149 23 C 0.012 3.988 24 C 0.581 3.419 25 O -0.456 6.456 26 N -0.679 5.679 27 C 0.579 3.421 28 O -0.458 6.458 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.401 0.599 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 2.542 27.319 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.002 3.998 15 N -0.366 5.366 16 C 0.338 3.662 17 O -0.403 6.403 18 C -0.107 4.107 19 C -0.080 4.080 20 C -0.065 4.065 21 C -0.126 4.126 22 C -0.153 4.153 23 C -0.007 4.007 24 C 0.368 3.632 25 O -0.326 6.326 26 N -0.346 5.346 27 C 0.366 3.634 28 O -0.329 6.329 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.237 0.763 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.175 0.825 42 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -1.580 1.705 27.560 27.658 hybrid contribution -0.219 0.516 -0.524 0.768 sum -1.799 2.221 27.036 27.186 Atomic orbital electron populations 1.21807 0.94575 1.02096 1.01522 1.21573 0.96772 1.00572 0.94130 0.90398 1.20575 0.96686 0.94237 0.85301 1.42334 1.66981 1.27648 1.00582 1.19280 1.28667 1.05452 0.83610 0.91065 1.24738 1.00983 0.97411 0.97897 1.69658 1.43594 1.16602 1.28424 0.86111 0.77604 0.77861 0.84581 1.20524 1.21868 1.21865 1.21529 1.00539 0.95353 0.82389 1.45990 1.57024 1.27816 1.05776 1.18044 0.80128 0.85015 0.83022 1.90830 1.39376 1.23691 1.86433 1.20260 1.00235 0.96169 0.93993 1.21700 0.93963 0.92680 0.99658 1.20745 0.96979 0.99804 0.89011 1.20682 1.01023 0.96659 0.94258 1.20368 1.03450 0.97702 0.93809 1.20802 0.93176 0.98348 0.88404 1.18220 0.76980 0.80843 0.87154 1.90888 1.37055 1.30491 1.74203 1.44425 1.53283 1.24754 1.12144 1.18324 0.77041 0.82105 0.85913 1.90872 1.36672 1.22301 1.83034 0.93989 0.91007 0.92678 0.96046 0.95920 0.78211 0.93555 0.90831 0.90831 0.76341 0.83337 0.83025 0.82522 0.72594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.94 37.16 0.33 -1.51 16 2 C -0.11 -1.51 2.46 -90.62 -0.22 -1.73 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.16 2.96 5.65 -4.04 -0.02 2.94 16 5 N -0.73 -17.49 5.33 -59.91 -0.32 -17.81 16 6 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 7 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 10 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.13 1.47 5.06 -4.04 -0.02 1.45 16 15 N -0.71 -6.64 5.23 -61.20 -0.32 -6.96 16 16 C 0.55 5.78 7.78 -12.25 -0.10 5.68 16 17 O -0.53 -7.51 16.34 5.33 0.09 -7.43 16 18 C -0.10 -0.79 5.88 -104.86 -0.62 -1.41 16 19 C -0.06 -0.31 9.54 -39.05 -0.37 -0.68 16 20 C -0.05 -0.23 10.08 -39.38 -0.40 -0.63 16 21 C -0.12 -0.80 6.40 -104.71 -0.67 -1.47 16 22 C -0.15 -1.11 6.39 -104.86 -0.67 -1.78 16 23 C 0.01 0.10 9.63 -38.94 -0.37 -0.28 16 24 C 0.58 4.55 8.45 -12.46 -0.11 4.44 16 25 O -0.46 -4.86 18.04 5.41 0.10 -4.77 16 26 N -0.68 -3.94 5.76 -13.19 -0.08 -4.01 16 27 C 0.58 4.12 8.47 -12.36 -0.10 4.01 16 28 O -0.46 -4.38 18.04 5.43 0.10 -4.29 16 29 H 0.04 0.41 7.18 -51.93 -0.37 0.03 16 30 H 0.07 1.13 7.18 -51.93 -0.37 0.75 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 9.53 6.85 -40.82 -0.28 9.25 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.40 2.65 5.66 -40.82 -0.23 2.42 16 39 H 0.15 0.38 6.36 -52.49 -0.33 0.05 16 40 H 0.15 0.45 8.06 -52.48 -0.42 0.03 16 41 H 0.16 1.34 7.65 -52.49 -0.40 0.94 16 42 H 0.43 1.49 8.96 -40.82 -0.37 1.12 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -34.65 365.78 -7.67 -42.32 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.86 Total: 5.28 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -3.59 Total: 1.88 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.01 Total: -55.49 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.28 Total: -16.48 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.65 -7.67 -42.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.934 kcal (2) G-P(sol) polarization free energy of solvation -34.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds