Wall clock time and date at job start Sat Apr 11 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47542 * 2 1 4 4 C 1.53005 * 109.47246 * 240.00405 * 2 1 3 5 5 N 1.46495 * 109.47370 * 64.99813 * 4 2 1 6 6 C 1.36935 * 120.00304 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99727 * 0.02562 * 6 5 4 8 8 C 1.38806 * 120.00085 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00225 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00028 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46934 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47066 * 120.00305 * 10 8 6 13 13 H 1.48502 * 109.47115 * 240.00365 * 10 8 6 14 14 C 1.52997 * 109.47188 * 120.00353 * 2 1 3 15 15 N 1.46498 * 109.47148 * 294.99856 * 14 2 1 16 16 C 1.34774 * 120.00303 * 179.97438 * 15 14 2 17 17 O 1.21535 * 120.00007 * 0.02562 * 16 15 14 18 18 C 1.48020 * 120.00356 * 179.97438 * 16 15 14 19 19 C 1.39465 * 119.91954 * 0.02562 * 18 16 15 20 20 C 1.38444 * 120.30213 * 179.74478 * 19 18 16 21 21 C 1.38588 * 119.90428 * 359.97438 * 20 19 18 22 22 C 1.40987 * 120.06226 * 0.02562 * 21 20 19 23 23 C 1.38430 * 119.95592 * 0.02562 * 22 21 20 24 24 C 1.47827 * 105.88627 * 180.02562 * 22 21 20 25 25 O 1.21452 * 125.68935 * 180.02562 * 24 22 21 26 26 N 1.34505 * 108.62387 * 359.97438 * 24 22 21 27 27 C 1.34510 * 111.10687 * 0.02562 * 26 24 22 28 28 O 1.21422 * 125.72116 * 180.02562 * 27 26 24 29 29 H 1.09002 * 109.46982 * 299.99765 * 1 2 3 30 30 H 1.08998 * 109.46808 * 59.99575 * 1 2 3 31 31 H 1.08997 * 109.47181 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47262 * 185.00398 * 4 2 1 33 33 H 1.09005 * 109.46664 * 305.00033 * 4 2 1 34 34 H 0.97000 * 119.99672 * 0.02562 * 5 4 2 35 35 H 0.97000 * 120.00300 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47198 * 174.99855 * 14 2 1 37 37 H 1.09000 * 109.47236 * 55.00185 * 14 2 1 38 38 H 0.97002 * 120.00006 * 359.97438 * 15 14 2 39 39 H 1.07998 * 119.84854 * 359.72214 * 19 18 16 40 40 H 1.08006 * 120.04551 * 179.97438 * 20 19 18 41 41 H 1.08001 * 120.19066 * 180.02562 * 23 22 21 42 42 H 0.97000 * 124.44212 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6525 0.0354 -2.4424 6 6 2.0011 -0.4206 -3.6856 7 1 2.5614 -1.3384 -3.7866 8 6 1.6334 0.2960 -4.8161 9 7 0.9501 1.4141 -4.6931 10 14 2.1084 -0.3265 -6.5121 11 1 2.8675 -1.5959 -6.3788 12 1 0.8811 -0.5661 -7.3131 13 1 2.9537 0.6871 -7.1927 14 6 2.0400 -0.7213 1.2492 15 7 1.6524 0.0352 2.4423 16 6 1.9955 -0.4138 3.6659 17 8 2.6269 -1.4460 3.7794 18 6 1.6045 0.3509 4.8714 19 6 0.8805 1.5356 4.7393 20 6 0.5061 2.2543 5.8617 21 6 0.8512 1.7953 7.1230 22 6 1.5830 0.5984 7.2632 23 6 1.9575 -0.1184 6.1397 24 6 1.7745 0.4091 8.7167 25 8 2.3626 -0.5162 9.2393 26 7 1.1897 1.4329 9.3640 27 6 0.6233 2.2928 8.4985 28 8 0.0260 3.3073 8.7957 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1263 -0.7995 -1.2056 33 1 1.6053 -1.7198 -1.2952 34 1 1.1489 0.8595 -2.3517 35 1 0.6935 1.9151 -5.4831 36 1 3.1263 -0.7996 1.2055 37 1 1.6054 -1.7199 1.2950 38 1 1.1489 0.8593 2.3518 39 1 0.6111 1.8941 3.7568 40 1 -0.0542 3.1715 5.7545 41 1 2.5178 -1.0360 6.2427 42 1 1.1774 1.5370 10.3283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753638708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:48:04 Heat of formation + Delta-G solvation = -74.725159 kcal Electronic energy + Delta-G solvation = -26354.401822 eV Core-core repulsion = 22299.330718 eV Total energy + Delta-G solvation = -4055.071103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.39518 -41.21447 -39.89618 -39.15067 -38.16845 -36.87317 -36.02841 -34.24973 -32.66860 -32.33566 -31.66614 -27.94503 -27.34388 -26.39588 -25.53517 -24.26490 -23.70367 -21.79808 -21.58992 -21.25665 -19.45841 -19.16177 -18.83777 -18.31206 -17.61420 -17.37761 -16.88985 -16.60271 -16.54437 -16.34092 -15.82068 -15.61712 -15.41769 -15.29447 -15.24551 -15.15405 -14.65664 -14.23798 -14.20905 -13.82249 -13.53963 -13.48977 -13.02238 -12.93446 -12.81978 -12.15917 -12.11021 -11.96199 -11.86114 -11.72730 -11.67173 -11.63085 -11.61846 -11.17492 -10.93110 -10.53655 -10.41129 -10.10922 -8.96262 -7.94042 -5.21367 -1.32010 -0.31473 0.56761 1.41524 1.49204 1.49748 1.59490 1.68028 1.78995 1.92457 2.46959 2.54636 2.58188 3.05097 3.40095 3.40192 3.49408 3.73261 3.82013 3.97048 4.01382 4.07809 4.12003 4.38469 4.59087 4.61750 4.69062 4.74161 4.75304 4.83335 4.88117 4.98326 5.00527 5.09824 5.17277 5.19878 5.27990 5.37447 5.43472 5.52606 5.54395 5.94411 6.29422 6.43049 6.58165 7.07959 7.36582 8.12504 8.36257 9.29430 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.030552 B = 0.001797 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.248177 B =15573.794160 C =16332.141515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.084 0.916 4 C 0.154 3.846 5 N -0.741 5.741 6 C -0.244 4.244 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.966 5.966 10 Si 0.970 3.030 11 H -0.269 1.269 12 H -0.294 1.294 13 H -0.293 1.293 14 C 0.137 3.863 15 N -0.701 5.701 16 C 0.555 3.445 17 O -0.571 6.571 18 C -0.112 4.112 19 C -0.040 4.040 20 C -0.035 4.035 21 C -0.121 4.121 22 C -0.159 4.159 23 C 0.005 3.995 24 C 0.586 3.414 25 O -0.490 6.490 26 N -0.667 5.667 27 C 0.587 3.413 28 O -0.480 6.480 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.020 0.980 33 H 0.021 0.979 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.417 0.583 39 H 0.182 0.818 40 H 0.181 0.819 41 H 0.142 0.858 42 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 3.603 27.781 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.102 0.898 4 C 0.027 3.973 5 N -0.384 5.384 6 C -0.376 4.376 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.617 5.617 10 Si 0.799 3.201 11 H -0.193 1.193 12 H -0.221 1.221 13 H -0.221 1.221 14 C 0.012 3.988 15 N -0.354 5.354 16 C 0.342 3.658 17 O -0.451 6.451 18 C -0.115 4.115 19 C -0.058 4.058 20 C -0.053 4.053 21 C -0.125 4.125 22 C -0.163 4.163 23 C -0.015 4.015 24 C 0.375 3.625 25 O -0.363 6.363 26 N -0.334 5.334 27 C 0.375 3.625 28 O -0.352 6.352 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.256 0.744 39 H 0.199 0.801 40 H 0.199 0.801 41 H 0.160 0.840 42 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -2.308 2.773 28.059 28.290 hybrid contribution 0.007 0.178 -0.609 0.635 sum -2.301 2.951 27.450 27.703 Atomic orbital electron populations 1.21761 0.93744 1.02017 1.02026 1.21344 0.97249 1.00263 0.92498 0.89807 1.20751 0.96595 0.94178 0.85751 1.42500 1.66800 1.27827 1.01287 1.19650 1.27627 1.05179 0.85128 0.90919 1.25497 1.01823 0.97976 1.01341 1.69790 1.45148 1.17812 1.28966 0.85127 0.77059 0.77589 0.80310 1.19326 1.22075 1.22070 1.21216 0.99949 0.95146 0.82453 1.45763 1.56815 1.28081 1.04719 1.18379 0.79155 0.84493 0.83749 1.90815 1.41474 1.25805 1.87050 1.20013 1.01902 0.97264 0.92353 1.22016 0.91690 0.90852 1.01252 1.21099 0.95962 1.00328 0.87930 1.20777 1.00897 0.96118 0.94728 1.20244 1.04388 0.98371 0.93255 1.20715 0.93501 0.98186 0.89058 1.18312 0.76224 0.80482 0.87525 1.90874 1.38726 1.31866 1.74821 1.44301 1.52415 1.23902 1.12767 1.18344 0.76340 0.81596 0.86219 1.90872 1.37766 1.23225 1.83376 0.89959 0.93949 0.93085 0.96229 0.96152 0.78975 0.93999 0.91638 0.91342 0.74423 0.80070 0.80125 0.83976 0.71360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.94 71.98 0.64 -2.65 16 2 C -0.09 -2.40 2.46 -10.79 -0.03 -2.43 16 3 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 4 C 0.15 5.63 5.65 86.38 0.49 6.11 16 5 N -0.74 -35.42 5.33 -343.45 -1.83 -37.25 16 6 C -0.24 -13.25 9.99 84.03 0.84 -12.41 16 7 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 8 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 9 N -0.97 -57.14 13.06 21.65 0.28 -56.86 16 10 Si 0.97 45.24 29.55 68.60 2.03 47.26 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 13 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 14 C 0.14 2.98 5.06 86.38 0.44 3.42 16 15 N -0.70 -11.17 5.23 -465.81 -2.44 -13.61 16 16 C 0.56 10.75 7.78 86.84 0.68 11.42 16 17 O -0.57 -16.27 16.34 -3.83 -0.06 -16.33 16 18 C -0.11 -1.49 5.88 -20.02 -0.12 -1.61 16 19 C -0.04 -0.24 9.54 22.61 0.22 -0.02 16 20 C -0.03 -0.21 10.08 22.40 0.23 0.02 16 21 C -0.12 -1.30 6.40 -19.92 -0.13 -1.43 16 22 C -0.16 -2.21 6.39 -20.02 -0.13 -2.34 16 23 C 0.01 0.08 9.63 22.69 0.22 0.30 16 24 C 0.59 9.00 8.45 86.82 0.73 9.74 16 25 O -0.49 -10.70 18.04 -3.56 -0.06 -10.77 16 26 N -0.67 -7.09 5.76 -432.59 -2.49 -9.59 16 27 C 0.59 7.32 8.47 86.89 0.74 8.05 16 28 O -0.48 -8.29 18.04 -3.47 -0.06 -8.35 16 29 H 0.08 1.28 7.18 -2.39 -0.02 1.26 16 30 H 0.04 1.28 7.18 -2.39 -0.02 1.26 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.38 18.83 6.85 -92.71 -0.64 18.19 16 35 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.42 3.77 5.66 -92.71 -0.53 3.25 16 39 H 0.18 -0.10 6.36 -2.91 -0.02 -0.12 16 40 H 0.18 0.14 8.06 -2.91 -0.02 0.11 16 41 H 0.14 2.58 7.65 -2.91 -0.02 2.56 16 42 H 0.44 2.67 8.96 -92.71 -0.83 1.84 16 Total: -1.00 -76.19 365.78 -0.24 -76.42 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -0.88 Total: 16.56 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 5.28 Total: 12.50 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -6.48 Total: -117.30 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.19 Total: -35.45 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -76.19 -0.24 -76.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.700 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds