Wall clock time and date at job start Sat Apr 11 2020 02:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21537 * 119.99745 * 0.02562 * 16 15 14 18 18 C 1.48013 * 120.00197 * 179.97438 * 16 15 14 19 19 C 1.39465 * 119.92396 * 0.02562 * 18 16 15 20 20 C 1.38441 * 120.30883 * 180.02562 * 19 18 16 21 21 C 1.38589 * 119.90048 * 359.96952 * 20 19 18 22 22 C 1.40993 * 120.06559 * 0.02562 * 21 20 19 23 23 C 1.38429 * 119.95364 * 359.75974 * 22 21 20 24 24 C 1.47829 * 105.89006 * 180.02562 * 22 21 20 25 25 O 1.21450 * 125.68954 * 180.02562 * 24 22 21 26 26 N 1.34504 * 108.62199 * 359.97438 * 24 22 21 27 27 C 1.34510 * 111.10507 * 0.02562 * 26 24 22 28 28 O 1.21434 * 125.71746 * 180.02562 * 27 26 24 29 29 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 30 30 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 32 32 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 33 33 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 37 37 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 38 38 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 39 39 H 1.08003 * 119.84311 * 359.97438 * 19 18 16 40 40 H 1.08002 * 120.05121 * 180.02562 * 20 19 18 41 41 H 1.07996 * 120.19224 * 180.22982 * 23 22 21 42 42 H 0.96999 * 124.44507 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6277 -1.4453 -3.7795 18 6 1.6044 0.3512 -4.8714 19 6 0.8796 1.5354 -4.7393 20 6 0.5083 2.2562 -5.8614 21 6 0.8585 1.8003 -7.1224 22 6 1.5913 0.6040 -7.2627 23 6 1.9655 -0.1131 -6.1394 24 6 1.7896 0.4188 -8.7159 25 8 2.3796 -0.5052 -9.2385 26 7 1.2065 1.4438 -9.3630 27 6 0.6362 2.3012 -8.4977 28 8 0.0385 3.3156 -8.7948 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2950 34 1 1.1483 0.8591 2.3518 35 1 0.6807 1.9070 5.4838 36 1 3.1264 -0.7994 -1.2056 37 1 1.6054 -1.7198 -1.2953 38 1 1.1483 0.8592 -2.3518 39 1 0.6059 1.8913 -3.7570 40 1 -0.0526 3.1729 -5.7542 41 1 2.5301 -1.0280 -6.2422 42 1 1.1991 1.5509 -10.3270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753638709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:48:08 Heat of formation + Delta-G solvation = -48.080131 kcal Electronic energy + Delta-G solvation = -26353.071930 eV Core-core repulsion = 22299.156242 eV Total energy + Delta-G solvation = -4053.915688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.81227 -40.42335 -39.22041 -38.46462 -36.95339 -36.22458 -34.59299 -32.84719 -31.87092 -31.73549 -30.06275 -27.01686 -26.01582 -25.55613 -24.58687 -23.31478 -22.42571 -21.10201 -20.91061 -20.09293 -18.56341 -18.45089 -17.79509 -17.03850 -17.00789 -16.50348 -16.10812 -15.79125 -15.65863 -15.18653 -14.76106 -14.64867 -14.59871 -14.46624 -14.21193 -13.72537 -13.65036 -13.30014 -13.09969 -12.69963 -12.47544 -12.38475 -12.12803 -11.25262 -11.13415 -11.04486 -11.00483 -10.97017 -10.77922 -10.66399 -10.54411 -10.31932 -10.06742 -9.95043 -9.88965 -9.72165 -9.25442 -8.91385 -6.97092 -5.81115 -3.09748 -0.75182 0.23197 1.13572 1.95318 2.32796 2.42211 2.68455 3.06715 3.15713 3.42029 3.46563 3.47365 3.62360 3.90542 4.13574 4.27759 4.49733 4.53948 4.56488 4.93192 5.10177 5.10551 5.19084 5.23493 5.27110 5.37054 5.45624 5.53372 5.69525 5.74295 5.85253 5.85929 5.87465 5.99513 6.12498 6.25597 6.33282 6.53951 6.57545 6.69539 6.78675 7.12172 7.17684 7.66370 7.84743 8.38046 9.49371 10.05855 10.40440 11.41715 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.030555 B = 0.001797 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.153761 B =15574.262846 C =16332.781140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.125 3.875 15 N -0.714 5.714 16 C 0.552 3.448 17 O -0.526 6.526 18 C -0.103 4.103 19 C -0.061 4.061 20 C -0.047 4.047 21 C -0.122 4.122 22 C -0.150 4.150 23 C 0.012 3.988 24 C 0.581 3.419 25 O -0.456 6.456 26 N -0.679 5.679 27 C 0.579 3.421 28 O -0.458 6.458 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.401 0.599 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 2.619 -27.270 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.002 3.998 15 N -0.366 5.366 16 C 0.338 3.662 17 O -0.403 6.403 18 C -0.107 4.107 19 C -0.080 4.080 20 C -0.065 4.065 21 C -0.126 4.126 22 C -0.153 4.153 23 C -0.007 4.007 24 C 0.368 3.632 25 O -0.326 6.326 26 N -0.346 5.346 27 C 0.366 3.634 28 O -0.329 6.329 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.041 0.959 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.237 0.763 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.175 0.825 42 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -1.570 1.798 -27.503 27.607 hybrid contribution -0.211 0.489 0.518 0.744 sum -1.781 2.287 -26.985 27.140 Atomic orbital electron populations 1.21810 0.94578 1.02092 1.01520 1.21573 0.96768 1.00573 0.94129 0.90397 1.20572 0.96690 0.94227 0.85307 1.42321 1.67095 1.27567 1.00542 1.19190 1.28820 1.05534 0.83612 0.91183 1.24739 1.00936 0.97419 0.97888 1.69643 1.43373 1.16647 1.28645 0.86248 0.78017 0.77729 0.84071 1.21250 1.21694 1.21257 1.21530 1.00541 0.95350 0.82391 1.45990 1.56972 1.27860 1.05782 1.18042 0.80131 0.85014 0.83023 1.90830 1.39402 1.23665 1.86435 1.20261 1.00212 0.96187 0.93996 1.21699 0.94008 0.92635 0.99656 1.20743 0.96971 0.99811 0.89012 1.20682 1.01040 0.96635 0.94261 1.20370 1.03417 0.97734 0.93813 1.20804 0.93200 0.98320 0.88405 1.18219 0.76995 0.80832 0.87147 1.90888 1.36972 1.30592 1.74183 1.44424 1.53224 1.24782 1.12173 1.18328 0.77042 0.82112 0.85909 1.90875 1.36701 1.22291 1.83021 0.93997 0.92681 0.91003 0.96050 0.95936 0.78205 0.93458 0.90830 0.90830 0.76341 0.83338 0.83023 0.82522 0.72591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.94 37.16 0.33 -1.52 16 2 C -0.11 -1.51 2.46 -90.62 -0.22 -1.73 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.16 2.97 5.65 -4.04 -0.02 2.95 16 5 N -0.73 -17.51 5.33 -59.91 -0.32 -17.83 16 6 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 10 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 14 C 0.13 1.47 5.06 -4.04 -0.02 1.45 16 15 N -0.71 -6.64 5.23 -61.19 -0.32 -6.96 16 16 C 0.55 5.78 7.78 -12.25 -0.10 5.68 16 17 O -0.53 -7.52 16.34 5.33 0.09 -7.43 16 18 C -0.10 -0.79 5.88 -104.86 -0.62 -1.41 16 19 C -0.06 -0.31 9.54 -39.05 -0.37 -0.68 16 20 C -0.05 -0.23 10.08 -39.38 -0.40 -0.63 16 21 C -0.12 -0.80 6.41 -104.71 -0.67 -1.47 16 22 C -0.15 -1.11 6.39 -104.86 -0.67 -1.78 16 23 C 0.01 0.10 9.63 -38.94 -0.37 -0.28 16 24 C 0.58 4.55 8.45 -12.46 -0.11 4.45 16 25 O -0.46 -4.87 18.04 5.41 0.10 -4.77 16 26 N -0.68 -3.94 5.76 -13.19 -0.08 -4.02 16 27 C 0.58 4.12 8.47 -12.36 -0.10 4.02 16 28 O -0.46 -4.39 18.04 5.42 0.10 -4.29 16 29 H 0.04 0.41 7.18 -51.93 -0.37 0.03 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.13 7.18 -51.93 -0.37 0.76 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 9.54 6.85 -40.82 -0.28 9.26 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.40 2.65 5.66 -40.82 -0.23 2.42 16 39 H 0.15 0.38 6.36 -52.48 -0.33 0.05 16 40 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.16 1.34 7.65 -52.49 -0.40 0.94 16 42 H 0.43 1.49 8.96 -40.82 -0.37 1.12 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -34.61 365.78 -7.67 -42.28 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.86 Total: 5.38 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -3.59 Total: 1.86 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.01 Total: -55.52 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.28 Total: -16.49 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.61 -7.67 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.800 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds