Wall clock time and date at job start Sat Apr 11 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21537 * 119.99745 * 0.02562 * 16 15 14 18 18 C 1.48013 * 120.00197 * 179.97438 * 16 15 14 19 19 C 1.39465 * 119.92396 * 0.02562 * 18 16 15 20 20 C 1.38441 * 120.30883 * 180.02562 * 19 18 16 21 21 C 1.38589 * 119.90048 * 359.96952 * 20 19 18 22 22 C 1.40993 * 120.06559 * 0.02562 * 21 20 19 23 23 C 1.38429 * 119.95364 * 359.75974 * 22 21 20 24 24 C 1.47829 * 105.89006 * 180.02562 * 22 21 20 25 25 O 1.21450 * 125.68954 * 180.02562 * 24 22 21 26 26 N 1.34504 * 108.62199 * 359.97438 * 24 22 21 27 27 C 1.34510 * 111.10507 * 0.02562 * 26 24 22 28 28 O 1.21434 * 125.71746 * 180.02562 * 27 26 24 29 29 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 30 30 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 32 32 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 33 33 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 37 37 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 38 38 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 39 39 H 1.08003 * 119.84311 * 359.97438 * 19 18 16 40 40 H 1.08002 * 120.05121 * 180.02562 * 20 19 18 41 41 H 1.07996 * 120.19224 * 180.22982 * 23 22 21 42 42 H 0.96999 * 124.44507 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6277 -1.4453 -3.7795 18 6 1.6044 0.3512 -4.8714 19 6 0.8796 1.5354 -4.7393 20 6 0.5083 2.2562 -5.8614 21 6 0.8585 1.8003 -7.1224 22 6 1.5913 0.6040 -7.2627 23 6 1.9655 -0.1131 -6.1394 24 6 1.7896 0.4188 -8.7159 25 8 2.3796 -0.5052 -9.2385 26 7 1.2065 1.4438 -9.3630 27 6 0.6362 2.3012 -8.4977 28 8 0.0385 3.3156 -8.7948 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2950 34 1 1.1483 0.8591 2.3518 35 1 0.6807 1.9070 5.4838 36 1 3.1264 -0.7994 -1.2056 37 1 1.6054 -1.7198 -1.2953 38 1 1.1483 0.8592 -2.3518 39 1 0.6059 1.8913 -3.7570 40 1 -0.0526 3.1729 -5.7542 41 1 2.5301 -1.0280 -6.2422 42 1 1.1991 1.5509 -10.3270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753638709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:48:07 Heat of formation + Delta-G solvation = -74.506355 kcal Electronic energy + Delta-G solvation = -26354.217857 eV Core-core repulsion = 22299.156242 eV Total energy + Delta-G solvation = -4055.061615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.39477 -41.21451 -39.89506 -39.15002 -38.16674 -36.87270 -36.02444 -34.24732 -32.66762 -32.33581 -31.66346 -27.94517 -27.34039 -26.39519 -25.53334 -24.26198 -23.70279 -21.79825 -21.58991 -21.25621 -19.45598 -19.16184 -18.83506 -18.31171 -17.61391 -17.37683 -16.88845 -16.60164 -16.54390 -16.34182 -15.82044 -15.61577 -15.40849 -15.29398 -15.24600 -15.15435 -14.66050 -14.23771 -14.20690 -13.82015 -13.53375 -13.49004 -13.02217 -12.93423 -12.75947 -12.19894 -12.14896 -11.95951 -11.86125 -11.72925 -11.67377 -11.63087 -11.61555 -11.17522 -10.90761 -10.53650 -10.41150 -10.10953 -8.96009 -7.93388 -5.20843 -1.32047 -0.31499 0.56729 1.41502 1.49688 1.51688 1.57759 1.68012 1.78967 1.92465 2.46958 2.54614 2.58720 3.05083 3.40068 3.40421 3.49390 3.73313 3.82005 3.97033 4.01380 4.07792 4.12045 4.38706 4.59084 4.61737 4.69064 4.74147 4.75311 4.83314 4.88100 4.98315 5.00516 5.09817 5.17314 5.19859 5.27966 5.37435 5.43457 5.52314 5.54306 5.94389 6.29711 6.43033 6.58146 7.07943 7.36900 8.12911 8.36739 9.29631 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.030555 B = 0.001797 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.153761 B =15574.262846 C =16332.781140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.084 0.916 4 C 0.154 3.846 5 N -0.741 5.741 6 C -0.247 4.247 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.966 5.966 10 Si 0.970 3.030 11 H -0.280 1.280 12 H -0.295 1.295 13 H -0.280 1.280 14 C 0.137 3.863 15 N -0.701 5.701 16 C 0.555 3.445 17 O -0.571 6.571 18 C -0.112 4.112 19 C -0.040 4.040 20 C -0.035 4.035 21 C -0.121 4.121 22 C -0.159 4.159 23 C 0.005 3.995 24 C 0.586 3.414 25 O -0.490 6.490 26 N -0.667 5.667 27 C 0.587 3.413 28 O -0.480 6.480 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.377 0.623 35 H 0.251 0.749 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.417 0.583 39 H 0.182 0.818 40 H 0.181 0.819 41 H 0.142 0.858 42 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 3.691 -27.711 28.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.102 0.898 4 C 0.027 3.973 5 N -0.384 5.384 6 C -0.378 4.378 7 H 0.090 0.910 8 C -0.266 4.266 9 N -0.617 5.617 10 Si 0.800 3.200 11 H -0.206 1.206 12 H -0.221 1.221 13 H -0.206 1.206 14 C 0.012 3.988 15 N -0.354 5.354 16 C 0.342 3.658 17 O -0.451 6.451 18 C -0.115 4.115 19 C -0.058 4.058 20 C -0.053 4.053 21 C -0.125 4.125 22 C -0.163 4.163 23 C -0.015 4.015 24 C 0.375 3.625 25 O -0.363 6.363 26 N -0.334 5.334 27 C 0.375 3.625 28 O -0.352 6.352 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.210 0.790 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.256 0.744 39 H 0.199 0.801 40 H 0.199 0.801 41 H 0.160 0.840 42 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -2.306 2.878 -27.982 28.224 hybrid contribution 0.020 0.146 0.597 0.615 sum -2.287 3.024 -27.385 27.646 Atomic orbital electron populations 1.21762 0.93748 1.02009 1.02026 1.21345 0.97243 1.00265 0.92496 0.89801 1.20746 0.96590 0.94164 0.85764 1.42488 1.66918 1.27755 1.01248 1.19580 1.27830 1.05307 0.85132 0.90961 1.25504 1.01750 0.97977 1.01356 1.69783 1.44923 1.17853 1.29111 0.85259 0.77836 0.77150 0.79795 1.20588 1.22099 1.20602 1.21217 0.99949 0.95141 0.82456 1.45764 1.56764 1.28123 1.04725 1.18378 0.79158 0.84492 0.83749 1.90816 1.41500 1.25780 1.87051 1.20014 1.01879 0.97284 0.92356 1.22016 0.91742 0.90803 1.01250 1.21098 0.95952 1.00333 0.87929 1.20777 1.00919 0.96090 0.94730 1.20246 1.04353 0.98403 0.93259 1.20717 0.93520 0.98162 0.89059 1.18311 0.76238 0.80473 0.87519 1.90873 1.38643 1.31965 1.74803 1.44300 1.52356 1.23929 1.12794 1.18347 0.76342 0.81601 0.86214 1.90875 1.37795 1.23216 1.83363 0.89959 0.93097 0.93946 0.96239 0.96186 0.78973 0.93988 0.91638 0.91347 0.74422 0.80069 0.80122 0.83978 0.71359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.94 71.98 0.64 -2.65 16 2 C -0.09 -2.41 2.46 -10.79 -0.03 -2.43 16 3 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.15 5.64 5.65 86.38 0.49 6.13 16 5 N -0.74 -35.48 5.33 -343.46 -1.83 -37.31 16 6 C -0.25 -13.41 9.99 84.03 0.84 -12.57 16 7 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 8 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 9 N -0.97 -57.11 13.06 21.65 0.28 -56.82 16 10 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 14 C 0.14 2.99 5.06 86.38 0.44 3.43 16 15 N -0.70 -11.19 5.23 -465.80 -2.44 -13.63 16 16 C 0.55 10.76 7.78 86.84 0.68 11.44 16 17 O -0.57 -16.29 16.34 -3.83 -0.06 -16.35 16 18 C -0.11 -1.49 5.88 -20.02 -0.12 -1.61 16 19 C -0.04 -0.24 9.54 22.61 0.22 -0.03 16 20 C -0.03 -0.21 10.08 22.40 0.23 0.02 16 21 C -0.12 -1.30 6.41 -19.92 -0.13 -1.43 16 22 C -0.16 -2.21 6.39 -20.02 -0.13 -2.34 16 23 C 0.01 0.08 9.63 22.69 0.22 0.30 16 24 C 0.59 9.01 8.45 86.82 0.73 9.74 16 25 O -0.49 -10.71 18.04 -3.56 -0.06 -10.77 16 26 N -0.67 -7.10 5.76 -432.58 -2.49 -9.59 16 27 C 0.59 7.32 8.47 86.89 0.74 8.06 16 28 O -0.48 -8.30 18.04 -3.51 -0.06 -8.36 16 29 H 0.08 1.28 7.18 -2.39 -0.02 1.26 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.28 7.18 -2.39 -0.02 1.27 16 32 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.38 18.85 6.85 -92.71 -0.63 18.21 16 35 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.42 3.78 5.66 -92.71 -0.52 3.26 16 39 H 0.18 -0.10 6.36 -2.91 -0.02 -0.12 16 40 H 0.18 0.14 8.06 -2.91 -0.02 0.11 16 41 H 0.14 2.59 7.65 -2.91 -0.02 2.56 16 42 H 0.44 2.68 8.96 -92.71 -0.83 1.85 16 Total: -1.00 -76.11 365.78 -0.24 -76.35 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -0.88 Total: 16.86 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.28 Total: 12.40 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -6.48 Total: -117.35 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.19 Total: -35.48 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -76.11 -0.24 -76.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.840 kcal (2) G-P(sol) polarization free energy of solvation -76.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds