Wall clock time and date at job start Sat Apr 11 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47187 * 2 1 4 4 C 1.52999 * 109.46607 * 240.00450 * 2 1 3 5 5 N 1.46496 * 109.47511 * 65.00277 * 4 2 1 6 6 C 1.36941 * 120.00344 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99653 * 359.97438 * 6 5 4 8 8 C 1.38806 * 119.99991 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00167 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00068 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47548 * 59.99207 * 10 8 6 12 12 H 1.48501 * 109.47488 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46879 * 299.99606 * 10 8 6 14 14 C 1.52999 * 109.47479 * 120.00726 * 2 1 3 15 15 N 1.46501 * 109.46439 * 294.99593 * 14 2 1 16 16 C 1.34780 * 119.99754 * 179.97438 * 15 14 2 17 17 O 1.21514 * 119.99929 * 0.02562 * 16 15 14 18 18 C 1.48151 * 120.00253 * 179.97438 * 16 15 14 19 19 C 1.39843 * 120.92074 * 0.02562 * 18 16 15 20 20 C 1.38125 * 118.99962 * 179.97438 * 19 18 16 21 21 N 1.31822 * 120.89822 * 0.02562 * 20 19 18 22 22 C 1.31797 * 122.05388 * 359.97438 * 21 20 19 23 23 C 1.38169 * 120.88973 * 0.02562 * 22 21 20 24 24 C 1.50704 * 120.49657 * 179.97438 * 23 22 21 25 25 F 1.39901 * 109.47347 * 0.02562 * 24 23 22 26 26 F 1.39900 * 109.47041 * 120.00257 * 24 23 22 27 27 F 1.39899 * 109.47075 * 239.99916 * 24 23 22 28 28 H 1.08994 * 109.47187 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46586 * 299.99819 * 1 2 3 30 30 H 1.09003 * 109.47221 * 59.99471 * 1 2 3 31 31 H 1.09000 * 109.47042 * 185.00151 * 4 2 1 32 32 H 1.09000 * 109.47593 * 304.99740 * 4 2 1 33 33 H 0.97001 * 119.99766 * 359.97438 * 5 4 2 34 34 H 0.97002 * 119.99986 * 180.02562 * 9 8 6 35 35 H 1.08992 * 109.47181 * 174.99960 * 14 2 1 36 36 H 1.09004 * 109.47088 * 54.99156 * 14 2 1 37 37 H 0.97000 * 120.00452 * 0.02562 * 15 14 2 38 38 H 1.08003 * 120.49425 * 0.24412 * 19 18 16 39 39 H 1.08004 * 119.54763 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.55363 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.0009 -0.4206 -3.6857 7 1 2.5618 -1.3379 -3.7866 8 6 1.6341 0.2967 -4.8161 9 7 0.9510 1.4149 -4.6930 10 14 2.1102 -0.3251 -6.5120 11 1 1.5168 -1.6685 -6.7314 12 1 1.6027 0.6142 -7.5442 13 1 3.5893 -0.4156 -6.6089 14 6 2.0401 -0.7214 1.2491 15 7 1.6526 0.0352 2.4423 16 6 1.9958 -0.4138 3.6659 17 8 2.6270 -1.4459 3.7793 18 6 1.6044 0.3515 4.8725 19 6 0.8784 1.5419 4.7643 20 6 0.5340 2.2231 5.9155 21 7 0.8807 1.7657 7.1022 22 6 1.5647 0.6486 7.2487 23 6 1.9506 -0.0961 6.1508 24 6 2.7330 -1.3718 6.3286 25 9 2.9503 -1.5994 7.6918 26 9 2.0112 -2.4408 5.7870 27 9 3.9632 -1.2597 5.6721 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 3.1262 -0.7995 -1.2057 32 1 1.6053 -1.7197 -1.2953 33 1 1.1482 0.8592 -2.3517 34 1 0.6944 1.9160 -5.4829 35 1 3.1263 -0.7996 1.2054 36 1 1.6054 -1.7199 1.2950 37 1 1.1484 0.8589 2.3518 38 1 0.5877 1.9204 3.7955 39 1 -0.0262 3.1436 5.8422 40 1 1.8277 0.3113 8.2404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753639214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:48:11 Heat of formation + Delta-G solvation = -137.350049 kcal Electronic energy + Delta-G solvation = -28135.207074 eV Core-core repulsion = 23535.563612 eV Total energy + Delta-G solvation = -4599.643462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.22792 -47.80948 -47.56191 -41.26032 -39.55636 -37.00945 -34.66482 -33.70899 -32.93073 -32.13838 -30.09934 -27.35419 -26.46260 -25.70029 -24.77741 -23.09455 -22.44600 -21.15675 -20.21137 -19.12399 -18.56238 -18.52085 -18.02340 -17.08983 -17.04526 -15.97033 -15.90720 -15.74836 -15.31943 -14.88001 -14.62593 -14.44539 -14.41720 -14.24998 -14.09574 -13.99175 -13.75271 -13.68431 -13.63101 -13.33871 -13.10600 -12.73467 -12.43633 -12.23733 -12.12883 -11.13892 -10.97783 -10.82333 -10.75397 -10.68082 -10.63903 -10.48356 -10.17158 -10.08108 -10.03770 -9.72259 -9.29143 -8.91531 -6.97340 -5.81250 -3.09929 -0.13989 0.19311 2.33345 2.40546 2.66857 3.07281 3.42002 3.42070 3.46492 3.47402 3.67281 3.76172 3.93655 4.05804 4.26902 4.44883 4.51609 4.55311 4.85397 4.92065 5.01799 5.09519 5.15473 5.26260 5.53259 5.68587 5.71695 5.84118 5.85087 5.97533 6.10993 6.23130 6.32381 6.56748 6.69080 6.78215 7.07824 7.10919 7.66356 7.76445 8.37908 9.49259 10.05566 10.40269 11.41656 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.024072 B = 0.002279 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.900814 B =12281.525239 C =13128.845582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.126 3.874 15 N -0.708 5.708 16 C 0.542 3.458 17 O -0.508 6.508 18 C -0.033 4.033 19 C -0.145 4.145 20 C 0.131 3.869 21 N -0.467 5.467 22 C 0.148 3.852 23 C -0.193 4.193 24 C 0.523 3.477 25 F -0.183 7.183 26 F -0.161 7.161 27 F -0.161 7.161 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.401 0.599 38 H 0.154 0.846 39 H 0.176 0.824 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 1.282 26.434 26.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.003 3.997 15 N -0.360 5.360 16 C 0.326 3.674 17 O -0.384 6.384 18 C -0.045 4.045 19 C -0.165 4.165 20 C -0.026 4.026 21 N -0.175 5.175 22 C -0.009 4.009 23 C -0.197 4.197 24 C 0.467 3.533 25 F -0.164 7.164 26 F -0.143 7.143 27 F -0.142 7.142 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.218 0.782 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.237 0.763 38 H 0.171 0.829 39 H 0.193 0.807 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.076 0.857 27.067 27.102 hybrid contribution 0.148 -0.210 -1.788 1.806 sum -0.928 0.646 25.279 25.305 Atomic orbital electron populations 1.21809 0.94561 1.02114 1.01497 1.21575 0.96783 1.00572 0.94107 0.90394 1.20565 0.96692 0.94227 0.85258 1.42319 1.66977 1.27672 1.00558 1.19188 1.28860 1.05469 0.83625 0.91182 1.24733 1.00949 0.97366 0.97889 1.69642 1.43500 1.16552 1.28672 0.86251 0.78054 0.77727 0.84057 1.21236 1.21680 1.21233 1.21557 1.00641 0.95353 0.82185 1.45904 1.56743 1.27784 1.05558 1.18042 0.80852 0.85311 0.83152 1.90903 1.38388 1.23023 1.86065 1.20323 0.95871 0.95138 0.93122 1.22478 0.97966 0.94198 1.01865 1.23138 0.93905 0.98717 0.86821 1.67799 1.10360 1.12320 1.27065 1.22811 0.90697 0.88919 0.98433 1.21257 1.04723 0.98054 0.95686 1.17676 0.78452 0.83774 0.73356 1.93159 1.95125 1.95350 1.32778 1.93256 1.77392 1.57964 1.85646 1.93258 1.44168 1.96021 1.80786 0.92655 0.94062 0.90953 0.96041 0.95909 0.78213 0.93447 0.90704 0.90707 0.76309 0.82864 0.80737 0.80572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.94 37.16 0.33 -1.58 16 2 C -0.11 -1.57 2.46 -90.62 -0.22 -1.79 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.16 3.04 5.65 -4.04 -0.02 3.02 16 5 N -0.73 -17.73 5.33 -59.91 -0.32 -18.05 16 6 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 7 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 9 N -0.94 -27.64 13.06 55.49 0.72 -26.92 16 10 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.13 1.57 5.06 -4.04 -0.02 1.55 16 15 N -0.71 -7.28 5.24 -61.15 -0.32 -7.60 16 16 C 0.54 6.44 7.63 -12.19 -0.09 6.35 16 17 O -0.51 -7.77 11.59 5.35 0.06 -7.71 16 18 C -0.03 -0.31 5.88 -104.65 -0.62 -0.93 16 19 C -0.14 -0.89 9.62 -39.02 -0.38 -1.27 16 20 C 0.13 0.75 11.17 -17.60 -0.20 0.56 16 21 N -0.47 -3.64 10.33 -13.31 -0.14 -3.78 16 22 C 0.15 1.17 10.59 -17.59 -0.19 0.99 16 23 C -0.19 -1.88 5.41 -104.06 -0.56 -2.44 16 24 C 0.52 6.03 2.78 36.01 0.10 6.13 16 25 F -0.18 -1.81 16.01 2.25 0.04 -1.77 16 26 F -0.16 -2.17 15.13 2.25 0.03 -2.14 16 27 F -0.16 -2.18 15.13 2.25 0.03 -2.14 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.42 7.18 -51.93 -0.37 0.05 16 30 H 0.07 1.16 7.18 -51.93 -0.37 0.79 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.38 9.65 6.85 -40.82 -0.28 9.37 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.40 3.03 5.80 -40.82 -0.24 2.79 16 38 H 0.15 0.52 6.54 -52.48 -0.34 0.18 16 39 H 0.18 0.42 8.06 -52.48 -0.42 0.00 16 40 H 0.18 1.02 7.17 -52.49 -0.38 0.64 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -33.38 347.16 -6.28 -39.65 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.49 Total: 4.76 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -2.11 Total: 3.35 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.05 Total: -56.36 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.06 Total: -7.71 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.10 Total: -6.05 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.38 -6.28 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753639214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.697 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds