Wall clock time and date at job start Sat Apr 11 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47159 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47290 * 120.00044 * 10 8 6 13 13 H 1.48503 * 109.47163 * 240.00049 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21517 * 119.99933 * 0.02562 * 16 15 14 18 18 C 1.48148 * 120.00166 * 179.97438 * 16 15 14 19 19 C 1.39835 * 120.92083 * 0.02562 * 18 16 15 20 20 C 1.38126 * 119.00044 * 179.97438 * 19 18 16 21 21 N 1.31829 * 120.90030 * 0.02562 * 20 19 18 22 22 C 1.31796 * 122.04715 * 359.97438 * 21 20 19 23 23 C 1.38173 * 120.89531 * 359.74871 * 22 21 20 24 24 C 1.50703 * 120.50255 * 180.28154 * 23 22 21 25 25 F 1.39907 * 109.46711 * 0.22579 * 24 23 22 26 26 F 1.39894 * 109.47048 * 120.22248 * 24 23 22 27 27 F 1.39893 * 109.47068 * 240.22957 * 24 23 22 28 28 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 29 29 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 31 31 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 32 32 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 36 36 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 37 37 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 38 38 H 1.08000 * 120.50310 * 359.95714 * 19 18 16 39 39 H 1.08005 * 119.55357 * 179.97438 * 20 19 18 40 40 H 1.08003 * 119.55298 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 2.8565 -1.6029 6.3792 12 1 2.9366 0.6778 7.1983 13 1 0.8649 -0.5779 7.3093 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6276 -1.4451 -3.7795 18 6 1.6040 0.3519 -4.8725 19 6 0.8772 1.5416 -4.7642 20 6 0.5328 2.2231 -5.9153 21 7 0.8794 1.7657 -7.1021 22 6 1.5641 0.6492 -7.2487 23 6 1.9550 -0.0927 -6.1506 24 6 2.7432 -1.3649 -6.3282 25 9 2.9648 -1.5897 -7.6912 26 9 3.9716 -1.2482 -5.6691 27 9 2.0248 -2.4376 -5.7894 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.1264 -0.7995 1.2056 32 1 1.6054 -1.7198 1.2950 33 1 1.1483 0.8591 2.3518 34 1 0.6807 1.9070 5.4838 35 1 3.1264 -0.7994 -1.2056 36 1 1.6054 -1.7198 -1.2953 37 1 1.1483 0.8592 -2.3518 38 1 0.5893 1.9219 -3.7952 39 1 -0.0289 3.1427 -5.8420 40 1 1.8271 0.3119 -8.2404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753639215.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:48:13 Heat of formation + Delta-G solvation = -160.472879 kcal Electronic energy + Delta-G solvation = -28136.313063 eV Core-core repulsion = 23535.666919 eV Total energy + Delta-G solvation = -4600.646144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.11917 -48.68004 -48.52441 -41.93175 -40.39023 -38.28824 -36.10947 -34.59016 -34.07330 -33.03793 -31.80600 -28.23267 -27.57606 -26.99697 -25.76358 -24.35667 -23.56301 -22.05600 -21.41030 -19.99428 -19.45290 -19.43689 -19.15369 -18.60197 -17.85714 -17.01728 -16.74853 -16.60871 -16.32335 -15.90918 -15.81020 -15.48712 -15.36041 -15.30453 -15.19130 -14.99648 -14.92557 -14.77850 -14.70471 -14.43565 -14.14298 -13.95068 -13.65461 -13.56781 -12.96393 -12.90026 -12.83568 -12.20323 -12.13405 -12.00847 -11.78171 -11.66803 -11.50023 -11.35013 -10.95359 -10.78820 -10.60187 -10.24192 -8.98957 -7.96015 -5.23679 -0.79052 -0.33434 1.47929 1.48318 1.53902 1.58274 1.62776 1.81437 2.45240 2.56091 2.63720 2.95181 3.24439 3.28756 3.38202 3.38804 3.48226 3.68300 3.81553 3.95444 3.99747 4.05791 4.33253 4.43508 4.44009 4.53481 4.65326 4.68894 4.76398 4.94032 5.03963 5.11988 5.19234 5.26499 5.37372 5.48244 5.50776 6.26275 6.28718 6.56601 6.92930 7.34533 8.09489 8.33798 9.27554 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.024080 B = 0.002279 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.503352 B =12281.843833 C =13130.019866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.084 0.916 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.245 4.245 7 H 0.072 0.928 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.970 3.030 11 H -0.269 1.269 12 H -0.293 1.293 13 H -0.293 1.293 14 C 0.138 3.862 15 N -0.695 5.695 16 C 0.541 3.459 17 O -0.550 6.550 18 C -0.052 4.052 19 C -0.129 4.129 20 C 0.140 3.860 21 N -0.479 5.479 22 C 0.150 3.850 23 C -0.208 4.208 24 C 0.518 3.482 25 F -0.176 7.176 26 F -0.178 7.178 27 F -0.177 7.177 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.019 0.981 32 H 0.020 0.980 33 H 0.378 0.622 34 H 0.252 0.748 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.417 0.583 38 H 0.186 0.814 39 H 0.215 0.785 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 2.525 -27.442 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.102 0.898 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.377 4.377 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.800 3.200 11 H -0.194 1.194 12 H -0.220 1.220 13 H -0.220 1.220 14 C 0.014 3.986 15 N -0.347 5.347 16 C 0.326 3.674 17 O -0.428 6.428 18 C -0.063 4.063 19 C -0.149 4.149 20 C -0.017 4.017 21 N -0.188 5.188 22 C -0.006 4.006 23 C -0.212 4.212 24 C 0.463 3.537 25 F -0.157 7.157 26 F -0.159 7.159 27 F -0.158 7.158 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.210 0.790 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.256 0.744 38 H 0.203 0.797 39 H 0.232 0.768 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.838 2.080 -28.118 28.254 hybrid contribution 0.380 -0.578 2.014 2.129 sum -1.458 1.502 -26.104 26.188 Atomic orbital electron populations 1.21755 0.93678 1.02016 1.02024 1.21344 0.97297 1.00255 0.92419 0.89777 1.20721 0.96562 0.94141 0.85702 1.42498 1.66910 1.27749 1.01258 1.19641 1.27693 1.05253 0.85070 0.90987 1.25503 1.01720 0.97958 1.01362 1.69796 1.45016 1.17916 1.29009 0.85120 0.77097 0.77593 0.80236 1.19371 1.21991 1.21967 1.21236 0.99966 0.95107 0.82293 1.45670 1.56517 1.28057 1.04503 1.18420 0.80035 0.84937 0.83980 1.90887 1.40285 1.24931 1.86681 1.20222 0.97754 0.96544 0.91763 1.22835 0.96044 0.92350 1.03673 1.23833 0.92663 0.99355 0.85821 1.67898 1.10551 1.12060 1.28267 1.23012 0.90299 0.88775 0.98502 1.21189 1.05688 0.97702 0.96640 1.17961 0.78110 0.84319 0.73332 1.93161 1.95036 1.95444 1.32106 1.93212 1.45487 1.96066 1.81136 1.93212 1.77821 1.58717 1.86087 0.90137 0.93099 0.93740 0.96272 0.96177 0.78956 0.93945 0.91628 0.91329 0.74428 0.79678 0.76844 0.79211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.94 71.98 0.64 -2.80 16 2 C -0.09 -2.52 2.46 -10.79 -0.03 -2.55 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C 0.16 5.85 5.65 86.38 0.49 6.34 16 5 N -0.74 -36.01 5.33 -343.46 -1.83 -37.84 16 6 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 7 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 8 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 9 N -0.97 -57.54 13.06 21.65 0.28 -57.26 16 10 Si 0.97 45.58 29.55 68.60 2.03 47.61 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 14 C 0.14 3.28 5.06 86.38 0.44 3.72 16 15 N -0.69 -12.83 5.24 -465.68 -2.44 -15.27 16 16 C 0.54 12.27 7.63 86.88 0.66 12.93 16 17 O -0.55 -16.99 11.59 -3.77 -0.04 -17.03 16 18 C -0.05 -0.89 5.88 -19.88 -0.12 -1.00 16 19 C -0.13 -1.11 9.62 22.63 0.22 -0.89 16 20 C 0.14 1.04 11.17 84.67 0.95 1.98 16 21 N -0.48 -6.09 10.34 -196.00 -2.03 -8.11 16 22 C 0.15 2.13 10.59 84.68 0.90 3.02 16 23 C -0.21 -3.86 5.41 -19.50 -0.11 -3.97 16 24 C 0.52 12.12 2.78 71.24 0.20 12.32 16 25 F -0.18 -3.50 16.01 44.97 0.72 -2.78 16 26 F -0.18 -4.96 15.14 44.97 0.68 -4.28 16 27 F -0.18 -4.91 15.12 44.97 0.68 -4.23 16 28 H 0.08 1.36 7.18 -2.39 -0.02 1.35 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.38 7.18 -2.39 -0.02 1.37 16 31 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.38 19.10 6.85 -92.71 -0.63 18.47 16 34 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 35 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.42 4.81 5.80 -92.71 -0.54 4.27 16 38 H 0.19 0.30 6.54 -2.91 -0.02 0.28 16 39 H 0.22 -0.16 8.06 -2.91 -0.02 -0.18 16 40 H 0.19 1.94 7.17 -2.91 -0.02 1.92 16 Total: -1.00 -73.80 347.16 3.54 -70.26 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -0.06 Total: 16.10 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 5.55 Total: 12.85 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -6.01 Total: -118.48 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.04 Total: -17.03 kcal Atomic # 9 Polarization: -13.38 SS G_CDS: 2.08 Total: -11.30 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -73.80 3.54 -70.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753639215.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.216 kcal (2) G-P(sol) polarization free energy of solvation -73.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds