Wall clock time and date at job start Sat Apr 11 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46497 * 119.99767 * 2 1 4 4 C 1.53007 * 109.47139 * 269.99723 * 3 2 1 5 5 C 1.52995 * 109.47153 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47272 * 180.02562 * 5 4 3 7 7 C 1.36934 * 120.00047 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00227 * 0.02562 * 7 6 5 9 9 C 1.38811 * 119.99764 * 179.97438 * 7 6 5 10 10 N 1.31617 * 120.00184 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 120.00008 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47027 * 90.00170 * 11 9 7 13 13 H 1.48498 * 109.47086 * 210.00227 * 11 9 7 14 14 H 1.48501 * 109.46878 * 330.00273 * 11 9 7 15 15 C 1.34772 * 119.99703 * 180.02562 * 2 1 3 16 16 O 1.21519 * 119.99691 * 182.10690 * 15 2 1 17 17 C 1.48166 * 120.00285 * 2.10523 * 15 2 1 18 18 C 1.39310 * 119.72177 * 172.80929 * 17 15 2 19 19 C 1.38590 * 119.05557 * 180.27474 * 18 17 15 20 20 C 1.50709 * 120.75462 * 179.72483 * 19 18 17 21 21 F 1.39899 * 109.46921 * 89.99909 * 20 19 18 22 22 F 1.39899 * 109.46812 * 210.00085 * 20 19 18 23 23 F 1.39896 * 109.46925 * 329.99706 * 20 19 18 24 24 C 1.38629 * 118.49169 * 359.43779 * 19 18 17 25 25 C 1.38565 * 119.34885 * 0.56348 * 24 19 18 26 26 N 1.31519 * 120.89951 * 359.70180 * 25 24 19 27 27 H 1.08994 * 109.47163 * 263.78189 * 1 2 3 28 28 H 1.08999 * 109.46817 * 23.78023 * 1 2 3 29 29 H 1.08998 * 109.47080 * 143.77386 * 1 2 3 30 30 H 1.08996 * 109.47216 * 29.99915 * 3 2 1 31 31 H 1.09003 * 109.47035 * 150.00385 * 3 2 1 32 32 H 1.09004 * 109.47072 * 300.00485 * 4 3 2 33 33 H 1.09003 * 109.46617 * 60.00406 * 4 3 2 34 34 H 1.09004 * 109.47382 * 300.00117 * 5 4 3 35 35 H 1.09007 * 109.46943 * 60.00145 * 5 4 3 36 36 H 0.97001 * 119.99513 * 0.02562 * 6 5 4 37 37 H 0.97001 * 119.99829 * 179.97438 * 10 9 7 38 38 H 1.07994 * 120.47481 * 0.02562 * 18 17 15 39 39 H 1.07998 * 120.32943 * 180.31325 * 24 19 18 40 40 H 1.07994 * 119.54499 * 179.72365 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4426 5 6 3.2180 3.0351 -1.4426 6 7 3.4617 3.4583 -2.8238 7 6 4.1347 4.6243 -3.0740 8 1 4.4863 5.2317 -2.2532 9 6 4.3661 5.0250 -4.3827 10 7 3.9381 4.2845 -5.3831 11 14 5.2836 6.6160 -4.7241 12 1 6.7395 6.3382 -4.8143 13 1 4.8097 7.1952 -6.0067 14 1 5.0307 7.5793 -3.6226 15 6 2.1389 -1.1672 -0.0005 16 8 3.3534 -1.1676 0.0382 17 6 1.3988 -2.4499 -0.0482 18 6 2.0978 -3.6454 -0.2000 19 6 1.3912 -4.8366 -0.2487 20 6 2.1081 -6.1514 -0.4181 21 9 2.4311 -6.6718 0.8397 22 9 1.2782 -7.0510 -1.0959 23 9 3.2801 -5.9519 -1.1554 24 6 0.0106 -4.7919 -0.1319 25 6 -0.6191 -3.5666 0.0169 26 7 0.0756 -2.4504 0.0545 27 1 -0.3633 -0.1113 1.0216 28 1 -0.3633 0.9404 -0.4144 29 1 -0.3633 -0.8290 -0.6073 30 1 1.6084 2.0283 0.5138 31 1 3.1500 1.1384 0.5138 32 1 3.0416 0.9507 -1.9564 33 1 1.5001 1.8407 -1.9563 34 1 2.6293 3.7950 -0.9286 35 1 4.1705 2.9043 -0.9288 36 1 3.1456 2.9129 -3.5610 37 1 4.0995 4.5647 -6.2976 38 1 3.1745 -3.6435 -0.2827 39 1 -0.5690 -5.7027 -0.1608 40 1 -1.6948 -3.5277 0.1037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483501708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:47:22 Heat of formation + Delta-G solvation = -117.138424 kcal Electronic energy + Delta-G solvation = -27458.739388 eV Core-core repulsion = 22859.972368 eV Total energy + Delta-G solvation = -4598.767021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.68813 -48.19862 -48.14595 -41.33343 -39.38949 -36.31485 -34.96949 -34.02829 -32.45824 -31.83651 -29.74787 -27.46772 -26.79662 -26.09449 -24.25161 -23.47428 -22.61530 -21.01384 -20.34398 -19.04781 -19.01640 -18.63385 -17.47277 -17.02798 -16.71154 -16.58321 -15.85032 -15.81422 -15.25524 -15.02336 -14.86071 -14.62056 -14.54315 -14.44786 -14.28412 -14.27763 -14.20622 -13.82961 -13.28981 -13.14104 -13.03512 -12.93076 -12.75302 -12.35044 -11.90274 -11.88844 -10.93161 -10.90110 -10.82806 -10.74226 -10.49055 -10.38652 -10.05888 -9.89507 -9.75520 -9.64254 -8.83476 -8.68311 -6.88258 -5.72608 -3.01300 -0.08426 0.23248 1.97583 2.29563 2.70992 3.07480 3.21118 3.40361 3.46652 3.51178 3.53111 3.55890 3.83237 4.10580 4.16602 4.27506 4.57580 4.63054 4.88332 5.00539 5.14458 5.20455 5.25952 5.32808 5.57643 5.59883 5.67617 5.70041 5.91567 6.03828 6.08616 6.31581 6.40764 6.50276 6.88121 6.89880 6.98267 7.22973 7.73486 7.93003 8.46344 9.57145 10.15755 10.50330 11.50536 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.002140 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.365505 B =13083.495918 C =13783.834529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.590 5.590 3 C 0.116 3.884 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.563 3.437 16 O -0.524 6.524 17 C 0.093 3.907 18 C -0.065 4.065 19 C -0.144 4.144 20 C 0.513 3.487 21 F -0.170 7.170 22 F -0.172 7.172 23 F -0.168 7.168 24 C -0.104 4.104 25 C 0.098 3.902 26 N -0.426 5.426 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.019 0.981 35 H 0.021 0.979 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.337 -23.807 14.654 30.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.320 5.320 3 C -0.006 4.006 4 C -0.178 4.178 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.349 3.651 16 O -0.399 6.399 17 C -0.046 4.046 18 C -0.086 4.086 19 C -0.154 4.154 20 C 0.458 3.542 21 F -0.152 7.152 22 F -0.153 7.153 23 F -0.149 7.149 24 C -0.124 4.124 25 C -0.060 4.060 26 N -0.138 5.138 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -12.991 -22.830 14.804 30.152 hybrid contribution 0.791 -0.390 -0.709 1.132 sum -12.199 -23.220 14.095 29.777 Atomic orbital electron populations 1.22393 0.78083 1.03694 1.02690 1.47766 1.08090 1.05604 1.70589 1.21631 0.97642 0.83056 0.98292 1.22069 1.01223 0.99079 0.95446 1.20540 0.96049 0.91814 0.88753 1.42354 1.68314 1.26011 1.01095 1.19248 1.27733 0.98144 0.91812 0.91125 1.24758 1.01761 0.99094 0.95570 1.69667 1.51555 1.38984 0.98149 0.86167 0.79530 0.83104 0.77269 1.21704 1.21785 1.20751 1.17736 0.86564 0.82795 0.78048 1.90847 1.12564 1.86528 1.49981 1.21309 0.89789 0.94129 0.99331 1.21935 1.03097 0.90305 0.93231 1.20406 0.95524 0.92899 1.06549 1.18040 0.77308 0.84393 0.74415 1.93260 1.92959 1.88067 1.40887 1.93220 1.71695 1.70037 1.80353 1.93257 1.49360 1.94986 1.77292 1.22237 0.93014 1.01508 0.95689 1.23097 1.01285 0.86543 0.95090 1.68235 1.06936 1.29953 1.08697 0.92477 0.91604 0.87926 0.89993 0.89479 0.91577 0.91822 0.96323 0.96134 0.78324 0.93542 0.81925 0.82808 0.80494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 9.31 59.85 0.56 1.26 16 2 N -0.59 -7.46 2.87 -182.57 -0.52 -7.98 16 3 C 0.12 1.60 5.39 -4.04 -0.02 1.57 16 4 C -0.14 -2.38 5.65 -26.73 -0.15 -2.53 16 5 C 0.16 3.27 6.26 -4.04 -0.03 3.24 16 6 N -0.73 -19.49 5.60 -59.91 -0.34 -19.82 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 10 N -0.93 -29.08 13.06 55.49 0.72 -28.35 16 11 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 C 0.56 7.80 7.66 -12.18 -0.09 7.71 16 16 O -0.52 -8.93 15.91 5.35 0.09 -8.84 16 17 C 0.09 1.01 6.62 -83.01 -0.55 0.46 16 18 C -0.06 -0.64 9.00 -39.05 -0.35 -0.99 16 19 C -0.14 -1.12 5.47 -104.34 -0.57 -1.70 16 20 C 0.51 4.09 3.39 36.01 0.12 4.21 16 21 F -0.17 -1.43 17.30 2.25 0.04 -1.39 16 22 F -0.17 -1.29 16.56 2.25 0.04 -1.25 16 23 F -0.17 -1.57 16.55 2.25 0.04 -1.54 16 24 C -0.10 -0.56 9.49 -39.32 -0.37 -0.93 16 25 C 0.10 0.53 11.18 -17.56 -0.20 0.33 16 26 N -0.43 -3.62 6.04 -9.80 -0.06 -3.68 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.59 8.02 -51.93 -0.42 0.17 16 29 H 0.10 0.93 5.26 -52.09 -0.27 0.66 16 30 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 31 H 0.09 1.29 7.39 -51.93 -0.38 0.90 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.38 10.70 7.67 -40.82 -0.31 10.39 16 37 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.16 1.67 7.30 -52.49 -0.38 1.28 16 39 H 0.15 0.41 7.69 -52.49 -0.40 0.00 16 40 H 0.18 0.31 8.06 -52.49 -0.42 -0.12 16 LS Contribution 356.01 15.07 5.36 5.36 Total: -1.00 -34.52 356.01 -6.23 -40.75 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.68 Total: 3.87 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -1.90 Total: 5.00 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.19 Total: -59.84 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.11 Total: -4.18 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.52 -6.23 -40.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483501708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.389 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds