Wall clock time and date at job start Sat Apr 11 2020 02:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46497 * 119.99767 * 2 1 4 4 C 1.53007 * 109.47139 * 269.99723 * 3 2 1 5 5 C 1.52995 * 109.47153 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47272 * 180.02562 * 5 4 3 7 7 C 1.36934 * 120.00047 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00227 * 0.02562 * 7 6 5 9 9 C 1.38811 * 119.99764 * 179.97438 * 7 6 5 10 10 N 1.31617 * 120.00184 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 120.00008 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47027 * 90.00170 * 11 9 7 13 13 H 1.48498 * 109.47086 * 210.00227 * 11 9 7 14 14 H 1.48501 * 109.46878 * 330.00273 * 11 9 7 15 15 C 1.34772 * 119.99703 * 180.02562 * 2 1 3 16 16 O 1.21519 * 119.99691 * 182.10690 * 15 2 1 17 17 C 1.48166 * 120.00285 * 2.10523 * 15 2 1 18 18 C 1.39310 * 119.72177 * 172.80929 * 17 15 2 19 19 C 1.38590 * 119.05557 * 180.27474 * 18 17 15 20 20 C 1.50709 * 120.75462 * 179.72483 * 19 18 17 21 21 F 1.39899 * 109.46921 * 89.99909 * 20 19 18 22 22 F 1.39899 * 109.46812 * 210.00085 * 20 19 18 23 23 F 1.39896 * 109.46925 * 329.99706 * 20 19 18 24 24 C 1.38629 * 118.49169 * 359.43779 * 19 18 17 25 25 C 1.38565 * 119.34885 * 0.56348 * 24 19 18 26 26 N 1.31519 * 120.89951 * 359.70180 * 25 24 19 27 27 H 1.08994 * 109.47163 * 263.78189 * 1 2 3 28 28 H 1.08999 * 109.46817 * 23.78023 * 1 2 3 29 29 H 1.08998 * 109.47080 * 143.77386 * 1 2 3 30 30 H 1.08996 * 109.47216 * 29.99915 * 3 2 1 31 31 H 1.09003 * 109.47035 * 150.00385 * 3 2 1 32 32 H 1.09004 * 109.47072 * 300.00485 * 4 3 2 33 33 H 1.09003 * 109.46617 * 60.00406 * 4 3 2 34 34 H 1.09004 * 109.47382 * 300.00117 * 5 4 3 35 35 H 1.09007 * 109.46943 * 60.00145 * 5 4 3 36 36 H 0.97001 * 119.99513 * 0.02562 * 6 5 4 37 37 H 0.97001 * 119.99829 * 179.97438 * 10 9 7 38 38 H 1.07994 * 120.47481 * 0.02562 * 18 17 15 39 39 H 1.07998 * 120.32943 * 180.31325 * 24 19 18 40 40 H 1.07994 * 119.54499 * 179.72365 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4426 5 6 3.2180 3.0351 -1.4426 6 7 3.4617 3.4583 -2.8238 7 6 4.1347 4.6243 -3.0740 8 1 4.4863 5.2317 -2.2532 9 6 4.3661 5.0250 -4.3827 10 7 3.9381 4.2845 -5.3831 11 14 5.2836 6.6160 -4.7241 12 1 6.7395 6.3382 -4.8143 13 1 4.8097 7.1952 -6.0067 14 1 5.0307 7.5793 -3.6226 15 6 2.1389 -1.1672 -0.0005 16 8 3.3534 -1.1676 0.0382 17 6 1.3988 -2.4499 -0.0482 18 6 2.0978 -3.6454 -0.2000 19 6 1.3912 -4.8366 -0.2487 20 6 2.1081 -6.1514 -0.4181 21 9 2.4311 -6.6718 0.8397 22 9 1.2782 -7.0510 -1.0959 23 9 3.2801 -5.9519 -1.1554 24 6 0.0106 -4.7919 -0.1319 25 6 -0.6191 -3.5666 0.0169 26 7 0.0756 -2.4504 0.0545 27 1 -0.3633 -0.1113 1.0216 28 1 -0.3633 0.9404 -0.4144 29 1 -0.3633 -0.8290 -0.6073 30 1 1.6084 2.0283 0.5138 31 1 3.1500 1.1384 0.5138 32 1 3.0416 0.9507 -1.9564 33 1 1.5001 1.8407 -1.9563 34 1 2.6293 3.7950 -0.9286 35 1 4.1705 2.9043 -0.9288 36 1 3.1456 2.9129 -3.5610 37 1 4.0995 4.5647 -6.2976 38 1 3.1745 -3.6435 -0.2827 39 1 -0.5690 -5.7027 -0.1608 40 1 -1.6948 -3.5277 0.1037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483501708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:47:21 Heat of formation + Delta-G solvation = -139.427071 kcal Electronic energy + Delta-G solvation = -27459.705897 eV Core-core repulsion = 22859.972368 eV Total energy + Delta-G solvation = -4599.733529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.33982 -48.85238 -48.80510 -42.06259 -40.31107 -37.62879 -36.53881 -34.85586 -33.95444 -32.80631 -31.44631 -28.18989 -27.75254 -27.32727 -25.59652 -24.28114 -23.90630 -22.56876 -21.24758 -19.70199 -19.67049 -19.43236 -19.16398 -18.25740 -17.52445 -17.24593 -16.83944 -16.76193 -16.55259 -15.99164 -15.77123 -15.67641 -15.45459 -15.37262 -15.24259 -15.14722 -14.94607 -14.93926 -14.83906 -14.53499 -14.04729 -13.74831 -13.51432 -13.39335 -13.35103 -12.91500 -12.75878 -12.73444 -12.43500 -12.07276 -11.84926 -11.82099 -11.53442 -11.46904 -10.95954 -10.53024 -10.44117 -9.70899 -9.04100 -7.97325 -5.27497 -0.72198 -0.37209 1.33411 1.45971 1.47648 1.49162 1.57527 1.80811 2.44376 2.46851 2.55062 2.75070 2.88832 3.19769 3.36206 3.50114 3.57000 3.67540 3.84194 3.94569 4.10204 4.23958 4.31187 4.43811 4.46939 4.53514 4.59135 4.66191 4.72310 4.81198 4.92270 5.10134 5.24339 5.28303 5.36713 5.47057 5.54845 6.19957 6.24752 6.43253 6.93179 7.30193 8.05206 8.28711 9.26673 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.002140 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.365505 B =13083.495918 C =13783.834529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.590 5.590 3 C 0.124 3.876 4 C -0.122 4.122 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.249 4.249 8 H 0.078 0.922 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.979 3.021 12 H -0.288 1.288 13 H -0.293 1.293 14 H -0.266 1.266 15 C 0.554 3.446 16 O -0.572 6.572 17 C 0.071 3.929 18 C -0.079 4.079 19 C -0.151 4.151 20 C 0.516 3.484 21 F -0.173 7.173 22 F -0.166 7.166 23 F -0.180 7.180 24 C -0.082 4.082 25 C 0.110 3.890 26 N -0.431 5.431 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.016 0.984 36 H 0.372 0.628 37 H 0.252 0.748 38 H 0.144 0.856 39 H 0.191 0.809 40 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.900 -24.265 15.823 33.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.320 5.320 3 C 0.001 3.999 4 C -0.161 4.161 5 C 0.028 3.972 6 N -0.393 5.393 7 C -0.380 4.380 8 H 0.096 0.904 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.807 3.193 12 H -0.215 1.215 13 H -0.219 1.219 14 H -0.191 1.191 15 C 0.341 3.659 16 O -0.451 6.451 17 C -0.065 4.065 18 C -0.100 4.100 19 C -0.160 4.160 20 C 0.462 3.538 21 F -0.155 7.155 22 F -0.147 7.147 23 F -0.162 7.162 24 C -0.101 4.101 25 C -0.050 4.050 26 N -0.143 5.143 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.034 0.966 36 H 0.203 0.797 37 H 0.061 0.939 38 H 0.162 0.838 39 H 0.208 0.792 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -15.575 -23.282 16.024 32.270 hybrid contribution 1.479 -0.384 -1.019 1.837 sum -14.096 -23.666 15.004 31.367 Atomic orbital electron populations 1.22590 0.75836 1.04415 1.03987 1.47874 1.09410 1.04786 1.69901 1.21464 0.98091 0.84560 0.95802 1.21863 1.00207 0.96307 0.97678 1.20703 0.96520 0.93931 0.86030 1.42614 1.68204 1.25467 1.02966 1.19688 1.27277 0.98826 0.92226 0.90368 1.25668 1.03232 1.02785 0.95439 1.69834 1.53228 1.40927 0.98314 0.85062 0.77864 0.79142 0.77219 1.21482 1.21913 1.19051 1.18286 0.86334 0.84154 0.77080 1.90804 1.14683 1.87407 1.52208 1.20796 0.90841 0.92626 1.02263 1.21799 1.02532 0.91169 0.94528 1.20438 0.96660 0.91750 1.07172 1.18042 0.76989 0.84633 0.74160 1.93254 1.93004 1.88139 1.41058 1.93229 1.71368 1.69870 1.80225 1.93233 1.50246 1.95081 1.77620 1.22740 0.91837 1.03152 0.92421 1.23909 1.03002 0.85394 0.92670 1.68172 1.05570 1.31625 1.08922 0.90775 0.90844 0.87311 0.86985 0.90904 0.94381 0.91335 0.94623 0.96605 0.79675 0.93919 0.83769 0.79156 0.75870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.23 9.31 127.77 1.19 2.42 16 2 N -0.59 -14.74 2.87 -849.82 -2.44 -17.18 16 3 C 0.12 3.37 5.39 86.38 0.47 3.84 16 4 C -0.12 -4.22 5.65 30.60 0.17 -4.05 16 5 C 0.15 6.49 6.26 86.38 0.54 7.04 16 6 N -0.75 -40.50 5.60 -343.45 -1.92 -42.43 16 7 C -0.25 -14.48 9.99 84.03 0.84 -13.64 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 10 N -0.97 -61.56 13.06 21.65 0.28 -61.28 16 11 Si 0.98 47.27 29.55 68.60 2.03 49.30 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 C 0.55 15.94 7.66 86.88 0.67 16.60 16 16 O -0.57 -20.99 15.91 -3.78 -0.06 -21.05 16 17 C 0.07 1.54 6.62 41.91 0.28 1.81 16 18 C -0.08 -1.61 9.00 22.61 0.20 -1.41 16 19 C -0.15 -2.16 5.47 -19.68 -0.11 -2.27 16 20 C 0.52 7.79 3.39 71.24 0.24 8.03 16 21 F -0.17 -2.77 17.30 44.97 0.78 -1.99 16 22 F -0.17 -2.17 16.56 44.97 0.74 -1.42 16 23 F -0.18 -3.49 16.55 44.97 0.74 -2.74 16 24 C -0.08 -0.58 9.49 22.44 0.21 -0.36 16 25 C 0.11 0.73 11.18 84.82 0.95 1.68 16 26 N -0.43 -6.34 6.04 -184.92 -1.12 -7.45 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.13 8.02 -2.39 -0.02 1.11 16 29 H 0.11 1.74 5.26 -2.71 -0.01 1.72 16 30 H 0.11 2.38 8.07 -2.39 -0.02 2.36 16 31 H 0.07 2.21 7.39 -2.39 -0.02 2.20 16 32 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 34 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.37 21.40 7.67 -92.71 -0.71 20.68 16 37 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.14 3.35 7.30 -2.91 -0.02 3.33 16 39 H 0.19 -0.01 7.69 -2.91 -0.02 -0.04 16 40 H 0.22 -0.61 8.06 -2.91 -0.02 -0.63 16 Total: -1.00 -77.55 356.01 5.53 -72.02 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.38 Total: 18.77 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 6.12 Total: 15.46 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -5.20 Total: -128.34 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.06 Total: -21.05 kcal Atomic # 9 Polarization: -8.42 SS G_CDS: 2.27 Total: -6.16 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -77.55 5.53 -72.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483501708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.408 kcal (2) G-P(sol) polarization free energy of solvation -77.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds