Wall clock time and date at job start Sat Apr 11 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99574 * 2 1 4 4 H 1.48509 * 109.46780 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47627 * 300.00197 * 3 2 1 6 6 H 1.48495 * 109.47282 * 60.01030 * 3 2 1 7 7 C 1.38805 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99974 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00286 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00090 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47079 * 180.02562 * 10 9 7 12 12 C 1.35345 * 126.75380 * 95.29386 * 11 10 9 13 13 N 1.35311 * 106.17645 * 180.12480 * 12 11 10 14 14 C 1.46495 * 125.87019 * 179.90582 * 13 12 11 15 15 H 1.09000 * 110.78470 * 156.50342 * 14 13 12 16 16 C 1.55405 * 110.85076 * 279.79960 * 14 13 12 17 17 C 1.54914 * 101.66697 * 153.69955 * 16 14 13 18 18 N 1.47426 * 104.82992 * 323.07703 * 17 16 14 19 19 C 1.34775 * 125.64489 * 204.09098 * 18 17 16 20 20 O 1.21697 * 119.99799 * 180.02562 * 19 18 17 21 21 C 1.46665 * 120.00305 * 0.04343 * 19 18 17 22 22 C 1.36543 * 125.98791 * 179.97438 * 21 19 18 23 23 C 1.40367 * 106.70550 * 179.97438 * 22 21 19 24 24 C 1.35130 * 107.11611 * 359.97438 * 23 22 21 25 25 O 1.33934 * 108.76648 * 359.75494 * 24 23 22 26 26 C 1.47018 * 108.70517 * 24.12623 * 18 17 16 27 27 N 1.28713 * 108.26159 * 359.64162 * 13 12 11 28 28 N 1.28633 * 110.17818 * 0.22247 * 27 13 12 29 29 H 0.97001 * 119.99858 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99871 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47860 * 59.99714 * 10 9 7 32 32 H 1.09009 * 109.47154 * 299.99666 * 10 9 7 33 33 H 1.07998 * 126.91385 * 0.02562 * 12 11 10 34 34 H 1.09000 * 110.89538 * 35.62760 * 16 14 13 35 35 H 1.09001 * 111.03900 * 271.83245 * 16 14 13 36 36 H 1.08999 * 110.37121 * 204.23438 * 17 16 14 37 37 H 1.09003 * 110.36718 * 81.91343 * 17 16 14 38 38 H 1.08000 * 126.64388 * 359.97438 * 22 21 19 39 39 H 1.07994 * 126.44014 * 179.97438 * 23 22 21 40 40 H 1.08000 * 125.61796 * 179.97438 * 24 23 22 41 41 H 1.09002 * 109.88241 * 118.36067 * 26 18 17 42 42 H 1.09000 * 109.88049 * 239.37196 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 0.6290 -5.4826 -1.0813 13 7 -0.2299 -6.4152 -0.6085 14 6 -0.9684 -7.3896 -1.4155 15 1 -1.2478 -8.2559 -0.8160 16 6 -2.2247 -6.7376 -2.0572 17 6 -2.4291 -7.6209 -3.3133 18 7 -1.0662 -7.9329 -3.7810 19 6 -0.7257 -8.2668 -5.0416 20 8 0.4360 -8.5052 -5.3151 21 6 -1.7549 -8.3425 -6.0837 22 6 -1.5478 -8.6666 -7.3938 23 6 -2.8007 -8.6170 -8.0247 24 6 -3.7062 -8.2697 -7.0837 25 8 -3.0731 -8.1108 -5.9143 26 6 -0.1404 -7.8202 -2.6446 27 7 -0.2822 -6.3028 0.6726 28 7 0.4870 -5.3499 1.0662 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6848 -3.7145 0.8894 32 1 2.6848 -3.7145 -0.8906 33 1 0.8997 -5.3139 -2.1131 34 1 -2.0262 -5.7025 -2.3355 35 1 -3.0838 -6.8031 -1.3895 36 1 -2.9763 -7.0710 -4.0789 37 1 -2.9590 -8.5366 -3.0510 38 1 -0.6030 -8.9134 -7.8553 39 1 -3.0029 -8.8185 -9.0662 40 1 -4.7665 -8.1447 -7.2470 41 1 0.3318 -8.7840 -2.4542 42 1 0.6211 -7.0706 -2.8597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098601621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:49:03 Heat of formation + Delta-G solvation = 116.836842 kcal Electronic energy + Delta-G solvation = -27292.240590 eV Core-core repulsion = 23277.768990 eV Total energy + Delta-G solvation = -4014.471600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.18754 -43.06058 -40.34666 -38.13059 -35.09872 -34.14372 -33.51783 -31.94218 -31.30552 -30.51575 -29.89785 -29.02159 -26.00448 -25.18528 -23.15037 -22.86830 -22.69278 -22.21595 -20.98183 -20.60450 -20.32405 -18.50266 -17.75716 -17.14092 -17.01762 -16.68904 -16.24870 -15.91805 -15.70892 -14.91847 -14.61388 -14.54176 -14.13785 -13.80976 -13.70493 -13.55386 -13.36890 -13.18226 -13.15030 -12.96616 -12.70417 -12.51402 -12.25150 -11.91836 -11.54920 -11.26122 -10.89100 -10.82320 -10.80841 -10.54505 -10.47940 -10.05132 -9.89671 -9.72424 -9.41389 -9.09214 -8.89486 -8.85297 -6.90557 -5.73081 -3.02545 0.57530 1.73794 1.87647 1.89896 2.26513 2.64510 2.70927 2.88431 3.46555 3.52142 3.54488 3.59319 3.81897 4.08804 4.29278 4.36859 4.42734 4.49524 4.62510 4.63951 4.76305 4.97587 5.06347 5.11213 5.17870 5.24158 5.27333 5.30890 5.37370 5.46851 5.51293 5.61686 5.63689 5.80991 5.83633 6.18188 6.33514 6.38862 6.65884 6.71815 6.77635 6.78450 7.48002 7.73112 8.44219 8.79873 9.56174 10.11590 10.47619 11.49799 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.002488 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.999279 B =11249.183194 C =12262.144826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.074 0.926 9 N -0.726 5.726 10 C 0.232 3.768 11 C 0.000 4.000 12 C -0.045 4.045 13 N -0.294 5.294 14 C 0.138 3.862 15 H 0.132 0.868 16 C -0.143 4.143 17 C 0.101 3.899 18 N -0.611 5.611 19 C 0.621 3.379 20 O -0.513 6.513 21 C -0.077 4.077 22 C -0.115 4.115 23 C -0.225 4.225 24 C -0.005 4.005 25 O -0.162 6.162 26 C 0.100 3.900 27 N -0.091 5.091 28 N -0.250 5.250 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.187 0.813 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.212 0.788 41 H 0.092 0.908 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 -22.984 -15.365 29.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.092 0.908 9 N -0.371 5.371 10 C 0.103 3.897 11 C -0.138 4.138 12 C -0.195 4.195 13 N -0.088 5.088 14 C 0.034 3.966 15 H 0.150 0.850 16 C -0.182 4.182 17 C -0.022 4.022 18 N -0.345 5.345 19 C 0.410 3.590 20 O -0.390 6.390 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.244 4.244 24 C -0.075 4.075 25 O -0.057 6.057 26 C -0.024 4.024 27 N -0.070 5.070 28 N -0.118 5.118 29 H 0.064 0.936 30 H 0.219 0.781 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.204 0.796 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.228 0.772 41 H 0.110 0.890 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.142 -23.492 -13.970 29.153 hybrid contribution 0.304 1.251 -1.357 1.871 sum -9.838 -22.241 -15.327 28.747 Atomic orbital electron populations 1.69694 1.05169 1.25498 1.57727 1.24758 0.95536 0.97729 1.02973 0.86085 0.78804 0.83980 0.77128 1.20448 1.21932 1.21852 1.19281 0.91146 0.83790 1.42674 0.90808 1.42304 1.05968 0.99261 1.89522 1.18969 0.90049 0.81358 0.99370 1.22458 1.02447 1.00554 0.88296 1.23295 0.98885 0.95148 1.02144 1.47079 1.30557 1.24521 1.06639 1.22499 0.91528 0.91408 0.91182 0.84997 1.23360 0.97543 1.00845 0.96434 1.22536 0.83532 0.99657 0.96433 1.48150 1.09875 1.68723 1.07738 1.16134 0.86147 0.77270 0.79418 1.90932 1.17412 1.50292 1.80341 1.21815 0.81862 1.13016 0.96226 1.22012 1.00017 0.99647 0.91864 1.21895 0.92382 1.08455 1.01639 1.24504 0.99123 1.01452 0.82435 1.84159 1.18919 1.68342 1.34288 1.22225 0.92437 1.03933 0.83757 1.78282 1.19641 1.17122 0.91915 1.75108 1.06452 1.04042 1.26192 0.93596 0.78130 0.94206 0.94411 0.79597 0.88726 0.87688 0.88495 0.89935 0.82089 0.82452 0.77191 0.89003 0.89104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.73 -19.13 5.59 -61.08 -0.34 -19.47 16 10 C 0.23 4.93 6.82 -5.19 -0.04 4.89 16 11 C 0.00 0.00 6.61 -82.78 -0.55 -0.55 16 12 C -0.04 -0.68 10.44 -17.05 -0.18 -0.86 16 13 N -0.29 -4.00 3.36 -52.86 -0.18 -4.18 16 14 C 0.14 1.22 4.00 -65.96 -0.26 0.95 16 15 H 0.13 0.92 8.14 -51.93 -0.42 0.49 16 16 C -0.14 -1.08 6.78 -24.44 -0.17 -1.24 16 17 C 0.10 0.65 6.17 -2.53 -0.02 0.64 16 18 N -0.61 -5.45 3.33 -172.06 -0.57 -6.02 16 19 C 0.62 6.80 7.82 -12.86 -0.10 6.70 16 20 O -0.51 -7.19 17.19 5.19 0.09 -7.10 16 21 C -0.08 -0.72 6.93 -36.79 -0.25 -0.97 16 22 C -0.11 -0.94 10.62 -39.39 -0.42 -1.36 16 23 C -0.22 -1.30 10.87 -39.89 -0.43 -1.74 16 24 C -0.01 -0.03 12.08 29.63 0.36 0.33 16 25 O -0.16 -1.18 7.86 4.99 0.04 -1.14 16 26 C 0.10 0.88 6.48 -3.07 -0.02 0.86 16 27 N -0.09 -1.57 13.16 60.35 0.79 -0.77 16 28 N -0.25 -5.07 12.41 33.29 0.41 -4.65 16 29 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.39 10.91 7.66 -40.82 -0.31 10.60 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.75 8.14 -51.92 -0.42 0.32 16 33 H 0.19 2.36 7.04 -52.49 -0.37 1.99 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.62 6.23 -51.93 -0.32 0.29 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.21 0.19 8.06 -52.49 -0.42 -0.23 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.09 0.91 6.00 -51.93 -0.31 0.60 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -36.94 362.18 -6.01 -42.95 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.09 Total: 5.12 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.32 Total: 0.24 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.84 Total: -63.18 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.13 Total: -8.24 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.94 -6.01 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098601621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.786 kcal (2) G-P(sol) polarization free energy of solvation -36.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds