Wall clock time and date at job start Sat Apr 11 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99574 * 2 1 4 4 H 1.48509 * 109.46780 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47627 * 300.00197 * 3 2 1 6 6 H 1.48495 * 109.47282 * 60.01030 * 3 2 1 7 7 C 1.38805 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99974 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00286 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00090 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47079 * 180.02562 * 10 9 7 12 12 C 1.35345 * 126.75380 * 95.29386 * 11 10 9 13 13 N 1.35311 * 106.17645 * 180.12480 * 12 11 10 14 14 C 1.46495 * 125.87019 * 179.90582 * 13 12 11 15 15 H 1.09000 * 110.78470 * 156.50342 * 14 13 12 16 16 C 1.55405 * 110.85076 * 279.79960 * 14 13 12 17 17 C 1.54914 * 101.66697 * 153.69955 * 16 14 13 18 18 N 1.47426 * 104.82992 * 323.07703 * 17 16 14 19 19 C 1.34775 * 125.64489 * 204.09098 * 18 17 16 20 20 O 1.21697 * 119.99799 * 180.02562 * 19 18 17 21 21 C 1.46665 * 120.00305 * 0.04343 * 19 18 17 22 22 C 1.36543 * 125.98791 * 179.97438 * 21 19 18 23 23 C 1.40367 * 106.70550 * 179.97438 * 22 21 19 24 24 C 1.35130 * 107.11611 * 359.97438 * 23 22 21 25 25 O 1.33934 * 108.76648 * 359.75494 * 24 23 22 26 26 C 1.47018 * 108.70517 * 24.12623 * 18 17 16 27 27 N 1.28713 * 108.26159 * 359.64162 * 13 12 11 28 28 N 1.28633 * 110.17818 * 0.22247 * 27 13 12 29 29 H 0.97001 * 119.99858 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99871 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47860 * 59.99714 * 10 9 7 32 32 H 1.09009 * 109.47154 * 299.99666 * 10 9 7 33 33 H 1.07998 * 126.91385 * 0.02562 * 12 11 10 34 34 H 1.09000 * 110.89538 * 35.62760 * 16 14 13 35 35 H 1.09001 * 111.03900 * 271.83245 * 16 14 13 36 36 H 1.08999 * 110.37121 * 204.23438 * 17 16 14 37 37 H 1.09003 * 110.36718 * 81.91343 * 17 16 14 38 38 H 1.08000 * 126.64388 * 359.97438 * 22 21 19 39 39 H 1.07994 * 126.44014 * 179.97438 * 23 22 21 40 40 H 1.08000 * 125.61796 * 179.97438 * 24 23 22 41 41 H 1.09002 * 109.88241 * 118.36067 * 26 18 17 42 42 H 1.09000 * 109.88049 * 239.37196 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0788 -4.8022 -0.0012 12 6 0.6290 -5.4826 -1.0813 13 7 -0.2299 -6.4152 -0.6085 14 6 -0.9684 -7.3896 -1.4155 15 1 -1.2478 -8.2559 -0.8160 16 6 -2.2247 -6.7376 -2.0572 17 6 -2.4291 -7.6209 -3.3133 18 7 -1.0662 -7.9329 -3.7810 19 6 -0.7257 -8.2668 -5.0416 20 8 0.4360 -8.5052 -5.3151 21 6 -1.7549 -8.3425 -6.0837 22 6 -1.5478 -8.6666 -7.3938 23 6 -2.8007 -8.6170 -8.0247 24 6 -3.7062 -8.2697 -7.0837 25 8 -3.0731 -8.1108 -5.9143 26 6 -0.1404 -7.8202 -2.6446 27 7 -0.2822 -6.3028 0.6726 28 7 0.4870 -5.3499 1.0662 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6848 -3.7145 0.8894 32 1 2.6848 -3.7145 -0.8906 33 1 0.8997 -5.3139 -2.1131 34 1 -2.0262 -5.7025 -2.3355 35 1 -3.0838 -6.8031 -1.3895 36 1 -2.9763 -7.0710 -4.0789 37 1 -2.9590 -8.5366 -3.0510 38 1 -0.6030 -8.9134 -7.8553 39 1 -3.0029 -8.8185 -9.0662 40 1 -4.7665 -8.1447 -7.2470 41 1 0.3318 -8.7840 -2.4542 42 1 0.6211 -7.0706 -2.8597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098601621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:49:03 Heat of formation + Delta-G solvation = 89.769190 kcal Electronic energy + Delta-G solvation = -27293.414332 eV Core-core repulsion = 23277.768990 eV Total energy + Delta-G solvation = -4015.645342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.36829 -43.67194 -41.10521 -38.96163 -36.85570 -35.35357 -34.07685 -33.71265 -32.20130 -31.70178 -31.04247 -29.76143 -27.74655 -26.06663 -24.81254 -24.05494 -23.34787 -22.73246 -22.32954 -21.62466 -20.97648 -19.42586 -19.13780 -18.45916 -17.62314 -17.48937 -17.24858 -16.88226 -16.57148 -16.39630 -16.01945 -15.58665 -15.42106 -15.13175 -14.75932 -14.42338 -14.35665 -14.09973 -13.99008 -13.90308 -13.60674 -13.57603 -13.10150 -13.06870 -13.00940 -12.80028 -12.59942 -12.19797 -12.04793 -11.91626 -11.84388 -11.63052 -11.07798 -11.04255 -10.98008 -10.27601 -10.10738 -9.62861 -9.03089 -7.94181 -5.24634 -0.03016 0.50586 1.03884 1.40072 1.41579 1.50109 1.51135 1.54188 1.61427 1.99387 2.00635 2.58769 2.84179 3.14562 3.32523 3.40966 3.53457 3.63901 3.76108 3.88870 3.94112 4.04332 4.09936 4.15082 4.21299 4.33767 4.40102 4.51422 4.53830 4.63011 4.70227 4.81274 4.84195 4.88701 4.92042 5.04588 5.08751 5.14679 5.38782 5.50728 5.59259 5.81620 6.09414 6.25775 6.72587 7.32601 7.44923 8.02905 8.29350 9.29945 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.002488 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.999279 B =11249.183194 C =12262.144826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.243 4.243 8 H 0.084 0.916 9 N -0.738 5.738 10 C 0.234 3.766 11 C -0.029 4.029 12 C -0.025 4.025 13 N -0.275 5.275 14 C 0.133 3.867 15 H 0.160 0.840 16 C -0.136 4.136 17 C 0.107 3.893 18 N -0.609 5.609 19 C 0.617 3.383 20 O -0.558 6.558 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.236 4.236 24 C 0.014 3.986 25 O -0.163 6.163 26 C 0.101 3.899 27 N -0.097 5.097 28 N -0.293 5.293 29 H 0.251 0.749 30 H 0.371 0.629 31 H 0.032 0.968 32 H 0.059 0.941 33 H 0.211 0.789 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.156 0.844 39 H 0.181 0.819 40 H 0.255 0.745 41 H 0.101 0.899 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.581 -24.006 -16.778 31.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.219 1.219 6 H -0.223 1.223 7 C -0.374 4.374 8 H 0.102 0.898 9 N -0.381 5.381 10 C 0.106 3.894 11 C -0.167 4.167 12 C -0.176 4.176 13 N -0.069 5.069 14 C 0.031 3.969 15 H 0.178 0.822 16 C -0.175 4.175 17 C -0.015 4.015 18 N -0.342 5.342 19 C 0.407 3.593 20 O -0.439 6.439 21 C -0.159 4.159 22 C -0.144 4.144 23 C -0.255 4.255 24 C -0.055 4.055 25 O -0.059 6.059 26 C -0.023 4.023 27 N -0.075 5.075 28 N -0.160 5.160 29 H 0.060 0.940 30 H 0.202 0.798 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.228 0.772 34 H 0.093 0.907 35 H 0.142 0.858 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.174 0.826 39 H 0.198 0.802 40 H 0.271 0.729 41 H 0.119 0.881 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.513 -24.559 -15.364 31.173 hybrid contribution 0.634 1.426 -1.025 1.867 sum -10.879 -23.134 -16.389 30.367 Atomic orbital electron populations 1.69859 1.06824 1.26018 1.59567 1.25637 0.96430 1.01308 1.03575 0.84998 0.78341 0.79368 0.76579 1.18666 1.21851 1.22257 1.19728 0.91792 0.84774 1.41127 0.89828 1.42495 1.05484 1.00631 1.89512 1.18976 0.90401 0.80343 0.99659 1.22212 1.03726 1.01247 0.89541 1.23502 0.97734 0.94100 1.02252 1.47385 1.29416 1.24133 1.05984 1.22970 0.91501 0.91347 0.91051 0.82229 1.23356 0.97326 0.99741 0.97108 1.22679 0.82418 1.00641 0.95739 1.48197 1.10891 1.67858 1.07213 1.16390 0.86047 0.76745 0.80077 1.90892 1.19202 1.52601 1.81182 1.21524 0.82573 1.15716 0.96045 1.22257 1.01081 0.99043 0.92030 1.22214 0.91364 1.08885 1.03044 1.25422 1.00604 0.98362 0.81162 1.84144 1.17979 1.68391 1.35387 1.22190 0.92289 1.04038 0.83735 1.78163 1.19368 1.16621 0.93364 1.75042 1.07892 1.05501 1.27574 0.94040 0.79762 0.94976 0.92329 0.77202 0.90747 0.85778 0.88067 0.87243 0.82599 0.80190 0.72903 0.88103 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 3 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 7 C -0.24 -13.86 9.99 84.03 0.84 -13.02 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 9 N -0.74 -39.51 5.59 -347.17 -1.94 -41.45 16 10 C 0.23 10.05 6.82 85.64 0.58 10.63 16 11 C -0.03 -1.12 6.61 41.60 0.28 -0.84 16 12 C -0.02 -0.73 10.44 83.49 0.87 0.14 16 13 N -0.28 -7.16 3.36 -321.14 -1.08 -8.24 16 14 C 0.13 2.07 4.00 46.27 0.18 2.25 16 15 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 16 C -0.14 -1.75 6.78 32.08 0.22 -1.53 16 17 C 0.11 1.11 6.17 86.86 0.54 1.64 16 18 N -0.61 -10.10 3.33 -816.49 -2.72 -12.82 16 19 C 0.62 13.41 7.82 86.44 0.68 14.09 16 20 O -0.56 -16.16 17.19 -4.34 -0.07 -16.23 16 21 C -0.11 -1.90 6.93 24.08 0.17 -1.73 16 22 C -0.12 -1.95 10.62 22.39 0.24 -1.71 16 23 C -0.24 -2.18 10.87 22.07 0.24 -1.94 16 24 C 0.01 0.09 12.08 67.10 0.81 0.90 16 25 O -0.16 -1.99 7.86 -5.05 -0.04 -2.03 16 26 C 0.10 1.66 6.48 86.73 0.56 2.22 16 27 N -0.10 -3.27 13.16 37.02 0.49 -2.78 16 28 N -0.29 -12.00 12.41 -48.60 -0.60 -12.60 16 29 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.37 21.60 7.66 -92.71 -0.71 20.89 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.21 5.09 7.04 -2.91 -0.02 5.07 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.04 6.23 -2.39 -0.01 1.02 16 37 H 0.11 0.62 8.14 -2.39 -0.02 0.61 16 38 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 39 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 40 H 0.26 -0.83 8.06 -2.91 -0.02 -0.85 16 41 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 1.50 6.00 -2.39 -0.01 1.49 16 Total: -1.00 -82.56 362.18 3.37 -79.19 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.36 Total: 21.90 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 6.67 Total: 7.01 kcal Atomic # 7 Polarization: -133.16 SS G_CDS: -5.57 Total: -138.73 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.11 Total: -18.26 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -82.56 3.37 -79.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098601621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.959 kcal (2) G-P(sol) polarization free energy of solvation -82.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds