Wall clock time and date at job start Sat Apr 11 2020 02:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86793 * 120.00271 * 2 1 4 4 H 1.48504 * 109.47241 * 89.99872 * 3 2 1 5 5 H 1.48496 * 109.47470 * 210.00038 * 3 2 1 6 6 H 1.48503 * 109.47256 * 330.00080 * 3 2 1 7 7 C 1.38796 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00241 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00007 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00322 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47336 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00007 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99789 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99827 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47352 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.46889 * 294.99679 * 15 14 13 17 17 C 1.53001 * 109.47225 * 174.99682 * 15 14 13 18 18 O 1.42890 * 109.47197 * 304.39642 * 17 15 14 19 19 N 1.46899 * 109.47024 * 54.99601 * 15 14 13 20 20 C 1.46901 * 110.99852 * 206.47145 * 19 15 14 21 21 H 1.09002 * 109.40159 * 324.65944 * 20 19 15 22 22 C 1.53072 * 109.40387 * 84.40968 * 20 19 15 23 23 C 1.53362 * 108.41586 * 169.03803 * 22 20 19 24 24 C 1.52922 * 108.66132 * 292.44365 * 23 22 20 25 25 N 1.45745 * 110.48784 * 50.76071 * 24 23 22 26 26 C 1.33358 * 124.11075 * 340.94946 * 25 24 23 27 27 O 1.21277 * 118.24608 * 182.19973 * 26 25 24 28 28 H 0.97001 * 119.99710 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47363 * 299.99999 * 10 9 7 30 30 H 1.09004 * 109.46924 * 60.00113 * 10 9 7 31 31 H 0.96999 * 120.00345 * 359.97438 * 13 11 10 32 32 H 1.09003 * 109.46749 * 299.99859 * 14 13 11 33 33 H 1.08995 * 109.47272 * 59.99509 * 14 13 11 34 34 H 1.08999 * 109.47040 * 64.39817 * 17 15 14 35 35 H 1.09006 * 109.46752 * 184.39414 * 17 15 14 36 36 H 0.96696 * 114.00716 * 180.02562 * 18 17 15 37 37 H 1.00899 * 111.00024 * 82.51791 * 19 15 14 38 38 H 1.09008 * 109.66922 * 288.76032 * 22 20 19 39 39 H 1.08999 * 109.67526 * 49.29148 * 22 20 19 40 40 H 1.08997 * 109.59881 * 172.69621 * 23 22 20 41 41 H 1.09001 * 109.75222 * 52.27803 * 23 22 20 42 42 H 1.09001 * 109.29407 * 290.45151 * 24 23 22 43 43 H 1.08996 * 109.13336 * 170.97203 * 24 23 22 44 44 H 0.97007 * 117.94893 * 160.92432 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4401 -0.7000 6 1 1.4479 2.6527 -0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2021 0.0001 10 6 4.0866 -2.9846 -0.0001 11 6 5.5730 -3.2327 -0.0002 12 8 6.3440 -2.2965 0.0003 13 7 6.0456 -4.4949 -0.0010 14 6 7.4906 -4.7360 -0.0005 15 6 7.7563 -6.2427 -0.0009 16 1 7.3913 -6.6762 0.9303 17 6 9.2600 -6.4954 -0.1262 18 8 9.7574 -5.8401 -1.2945 19 7 7.0593 -6.8625 -1.1358 20 6 6.7483 -8.2709 -0.8570 21 1 7.5525 -8.7092 -0.2660 22 6 5.4374 -8.3564 -0.0712 23 6 4.9915 -9.8232 -0.0308 24 6 4.6041 -10.2560 -1.4454 25 7 5.6618 -9.9188 -2.3897 26 6 6.6169 -9.0187 -2.1527 27 8 7.4221 -8.7916 -3.0307 28 1 -0.4850 0.8401 -0.0004 29 1 3.6433 -3.4319 0.8896 30 1 3.6440 -3.4314 -0.8904 31 1 5.4289 -5.2436 -0.0011 32 1 7.9339 -4.2883 -0.8900 33 1 7.9332 -4.2896 0.8899 34 1 9.7689 -6.1038 0.7545 35 1 9.4430 -7.5672 -0.2050 36 1 10.7064 -5.9580 -1.4378 37 1 7.5981 -6.7723 -1.9840 38 1 5.5940 -7.9923 0.9443 39 1 4.6743 -7.7540 -0.5640 40 1 4.1319 -9.9258 0.6314 41 1 5.8088 -10.4468 0.3315 42 1 3.6846 -9.7490 -1.7380 43 1 4.4407 -11.3336 -1.4571 44 1 5.6719 -10.3781 -3.2441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278048310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:49:36 Heat of formation + Delta-G solvation = -125.226643 kcal Electronic energy + Delta-G solvation = -26366.948792 eV Core-core repulsion = 22445.131732 eV Total energy + Delta-G solvation = -3921.817060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.140 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.92938 -39.26600 -38.10256 -36.90073 -35.81192 -34.17363 -32.39552 -32.34644 -30.63197 -29.20097 -27.76742 -25.70122 -25.34904 -24.27977 -23.05004 -21.01430 -20.21580 -19.60776 -18.07824 -17.79159 -17.63923 -17.04839 -16.47165 -16.26106 -15.76436 -15.36984 -15.13055 -14.93720 -14.67155 -14.59108 -14.52087 -14.41328 -13.98543 -13.69469 -13.56049 -13.08160 -12.74409 -12.72675 -12.45148 -12.16305 -12.04354 -11.81992 -11.64304 -11.50131 -11.30279 -11.20189 -10.95736 -10.53970 -10.41096 -10.13393 -9.80049 -9.52480 -9.36966 -8.95239 -8.89208 -8.70809 -8.41692 -6.84035 -6.23917 -3.94332 2.17719 2.80246 2.87610 3.16308 3.36826 3.40839 3.56121 3.57534 3.80728 3.97419 4.03808 4.21976 4.35963 4.38688 4.44934 4.55960 4.62900 4.69261 4.85859 4.88051 4.96693 5.03870 5.09173 5.15393 5.21049 5.27578 5.35647 5.45551 5.49770 5.66019 5.78132 5.88442 6.02990 6.12489 6.29019 6.51600 6.74611 6.85591 7.06083 7.26365 7.77439 7.86712 7.99490 8.46752 8.69615 9.22815 10.85418 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014261 B = 0.002731 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.858690 B =10251.499922 C =11627.217629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.268 1.268 5 H -0.235 1.235 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.087 0.913 9 S -0.143 6.143 10 C -0.122 4.122 11 C 0.528 3.472 12 O -0.525 6.525 13 N -0.723 5.723 14 C 0.139 3.861 15 C 0.078 3.922 16 H 0.096 0.904 17 C 0.048 3.952 18 O -0.562 6.562 19 N -0.664 5.664 20 C 0.074 3.926 21 H 0.075 0.925 22 C -0.119 4.119 23 C -0.137 4.137 24 C 0.107 3.893 25 N -0.716 5.716 26 C 0.522 3.478 27 O -0.550 6.550 28 H 0.270 0.730 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.402 0.598 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.382 0.618 37 H 0.370 0.630 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.044 -26.252 1.591 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.193 1.193 5 H -0.159 1.159 6 H -0.200 1.200 7 C -0.667 4.667 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.272 4.272 11 C 0.314 3.686 12 O -0.400 6.400 13 N -0.377 5.377 14 C 0.014 3.986 15 C -0.032 4.032 16 H 0.114 0.886 17 C -0.032 4.032 18 O -0.367 6.367 19 N -0.301 5.301 20 C -0.039 4.039 21 H 0.093 0.907 22 C -0.157 4.157 23 C -0.175 4.175 24 C -0.017 4.017 25 N -0.369 5.369 26 C 0.308 3.692 27 O -0.427 6.427 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.236 0.764 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.229 0.771 37 H 0.194 0.806 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 15.344 -23.949 1.468 28.481 hybrid contribution 0.271 -1.644 -0.232 1.683 sum 15.614 -25.594 1.236 30.006 Atomic orbital electron populations 1.69945 1.05922 1.27689 1.48371 1.24710 0.94442 0.98958 0.93234 0.86731 0.81969 0.83258 0.79885 1.19260 1.15855 1.20025 1.22338 0.88433 0.97480 1.58450 0.89447 1.84782 1.09034 1.00476 1.97403 1.23256 0.94374 1.03986 1.05611 1.20226 0.90426 0.82459 0.75509 1.90690 1.58760 1.42354 1.48245 1.45731 1.07294 1.07777 1.76857 1.21106 0.82050 0.92708 1.02766 1.22039 0.90248 0.96091 0.94851 0.88588 1.22774 0.95721 0.95919 0.88768 1.86506 1.28930 1.76229 1.45084 1.60581 1.51162 1.11501 1.06812 1.21435 0.99118 0.89974 0.93403 0.90738 1.21803 0.96557 0.96372 1.01005 1.21893 1.02858 0.96715 0.96082 1.21451 0.90204 1.00815 0.89240 1.45406 1.28804 1.42032 1.20610 1.20069 0.80368 0.79317 0.89461 1.90777 1.41712 1.64734 1.45471 0.92017 0.88749 0.88572 0.76376 0.90428 0.91500 0.92613 0.93566 0.77079 0.80571 0.90400 0.89534 0.89121 0.91118 0.91011 0.90450 0.76383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.95 13.97 55.49 0.78 -26.17 16 2 C 0.09 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 22.19 27.74 -169.99 -4.71 17.48 16 4 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.23 -6.10 6.74 56.52 0.38 -5.72 16 6 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 8 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 9 S -0.14 -3.74 18.55 -107.50 -1.99 -5.73 16 10 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 11 C 0.53 9.90 7.85 -10.98 -0.09 9.82 16 12 O -0.53 -11.93 15.86 5.56 0.09 -11.84 16 13 N -0.72 -9.87 5.39 -60.30 -0.32 -10.20 16 14 C 0.14 1.68 5.26 -4.04 -0.02 1.66 16 15 C 0.08 0.65 2.37 -67.71 -0.16 0.49 16 16 H 0.10 0.61 7.20 -51.93 -0.37 0.24 16 17 C 0.05 0.35 6.69 37.16 0.25 0.60 16 18 O -0.56 -4.99 12.05 -35.23 -0.42 -5.41 16 19 N -0.66 -6.23 5.49 -101.18 -0.56 -6.78 16 20 C 0.07 0.55 2.52 -69.08 -0.17 0.37 16 21 H 0.08 0.48 7.20 -51.93 -0.37 0.10 16 22 C -0.12 -0.66 5.43 -26.51 -0.14 -0.80 16 23 C -0.14 -0.49 6.02 -26.58 -0.16 -0.65 16 24 C 0.11 0.42 7.17 -4.49 -0.03 0.39 16 25 N -0.72 -4.74 5.45 -61.39 -0.33 -5.07 16 26 C 0.52 4.96 7.43 -11.87 -0.09 4.87 16 27 O -0.55 -7.44 16.65 5.56 0.09 -7.35 16 28 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 30 H 0.10 1.83 8.14 -51.91 -0.42 1.41 16 31 H 0.40 4.55 8.14 -40.82 -0.33 4.22 16 32 H 0.08 1.15 7.41 -51.93 -0.38 0.76 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.29 7.49 -51.93 -0.39 -0.10 16 36 H 0.38 1.81 9.12 45.56 0.42 2.22 16 37 H 0.37 4.44 6.68 -39.29 -0.26 4.18 16 38 H 0.08 0.36 7.60 -51.92 -0.39 -0.03 16 39 H 0.09 0.59 8.13 -51.93 -0.42 0.17 16 40 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.07 0.23 8.13 -51.93 -0.42 -0.19 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.40 2.39 8.80 -40.82 -0.36 2.03 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -38.36 373.77 -7.78 -46.13 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.84 Total: 6.99 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.18 Total: 2.33 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.44 Total: -48.23 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.24 Total: -24.60 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.36 -7.78 -46.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278048310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.092 kcal (2) G-P(sol) polarization free energy of solvation -38.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds