Wall clock time and date at job start Sat Apr 11 2020 02:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86793 * 120.00271 * 2 1 4 4 H 1.48504 * 109.47241 * 89.99872 * 3 2 1 5 5 H 1.48496 * 109.47470 * 210.00038 * 3 2 1 6 6 H 1.48503 * 109.47256 * 330.00080 * 3 2 1 7 7 C 1.38796 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00241 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00007 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00322 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47336 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00007 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99789 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99827 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47352 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.46889 * 294.99679 * 15 14 13 17 17 C 1.53001 * 109.47225 * 174.99682 * 15 14 13 18 18 O 1.42890 * 109.47197 * 304.39642 * 17 15 14 19 19 N 1.46899 * 109.47024 * 54.99601 * 15 14 13 20 20 C 1.46901 * 110.99852 * 206.47145 * 19 15 14 21 21 H 1.09002 * 109.40159 * 324.65944 * 20 19 15 22 22 C 1.53072 * 109.40387 * 84.40968 * 20 19 15 23 23 C 1.53362 * 108.41586 * 169.03803 * 22 20 19 24 24 C 1.52922 * 108.66132 * 292.44365 * 23 22 20 25 25 N 1.45745 * 110.48784 * 50.76071 * 24 23 22 26 26 C 1.33358 * 124.11075 * 340.94946 * 25 24 23 27 27 O 1.21277 * 118.24608 * 182.19973 * 26 25 24 28 28 H 0.97001 * 119.99710 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47363 * 299.99999 * 10 9 7 30 30 H 1.09004 * 109.46924 * 60.00113 * 10 9 7 31 31 H 0.96999 * 120.00345 * 359.97438 * 13 11 10 32 32 H 1.09003 * 109.46749 * 299.99859 * 14 13 11 33 33 H 1.08995 * 109.47272 * 59.99509 * 14 13 11 34 34 H 1.08999 * 109.47040 * 64.39817 * 17 15 14 35 35 H 1.09006 * 109.46752 * 184.39414 * 17 15 14 36 36 H 0.96696 * 114.00716 * 180.02562 * 18 17 15 37 37 H 1.00899 * 111.00024 * 82.51791 * 19 15 14 38 38 H 1.09008 * 109.66922 * 288.76032 * 22 20 19 39 39 H 1.08999 * 109.67526 * 49.29148 * 22 20 19 40 40 H 1.08997 * 109.59881 * 172.69621 * 23 22 20 41 41 H 1.09001 * 109.75222 * 52.27803 * 23 22 20 42 42 H 1.09001 * 109.29407 * 290.45151 * 24 23 22 43 43 H 1.08996 * 109.13336 * 170.97203 * 24 23 22 44 44 H 0.97007 * 117.94893 * 160.92432 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4401 -0.7000 6 1 1.4479 2.6527 -0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2021 0.0001 10 6 4.0866 -2.9846 -0.0001 11 6 5.5730 -3.2327 -0.0002 12 8 6.3440 -2.2965 0.0003 13 7 6.0456 -4.4949 -0.0010 14 6 7.4906 -4.7360 -0.0005 15 6 7.7563 -6.2427 -0.0009 16 1 7.3913 -6.6762 0.9303 17 6 9.2600 -6.4954 -0.1262 18 8 9.7574 -5.8401 -1.2945 19 7 7.0593 -6.8625 -1.1358 20 6 6.7483 -8.2709 -0.8570 21 1 7.5525 -8.7092 -0.2660 22 6 5.4374 -8.3564 -0.0712 23 6 4.9915 -9.8232 -0.0308 24 6 4.6041 -10.2560 -1.4454 25 7 5.6618 -9.9188 -2.3897 26 6 6.6169 -9.0187 -2.1527 27 8 7.4221 -8.7916 -3.0307 28 1 -0.4850 0.8401 -0.0004 29 1 3.6433 -3.4319 0.8896 30 1 3.6440 -3.4314 -0.8904 31 1 5.4289 -5.2436 -0.0011 32 1 7.9339 -4.2883 -0.8900 33 1 7.9332 -4.2896 0.8899 34 1 9.7689 -6.1038 0.7545 35 1 9.4430 -7.5672 -0.2050 36 1 10.7064 -5.9580 -1.4378 37 1 7.5981 -6.7723 -1.9840 38 1 5.5940 -7.9923 0.9443 39 1 4.6743 -7.7540 -0.5640 40 1 4.1319 -9.9258 0.6314 41 1 5.8088 -10.4468 0.3315 42 1 3.6846 -9.7490 -1.7380 43 1 4.4407 -11.3336 -1.4571 44 1 5.6719 -10.3781 -3.2441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278048310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:49:36 Heat of formation + Delta-G solvation = -160.343879 kcal Electronic energy + Delta-G solvation = -26368.471590 eV Core-core repulsion = 22445.131732 eV Total energy + Delta-G solvation = -3923.339858 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.56512 -40.58197 -38.94380 -37.49199 -36.50831 -35.26574 -34.65170 -33.06651 -31.57116 -30.37966 -28.36936 -27.84658 -26.37992 -24.85551 -23.50902 -21.79787 -21.60426 -20.14106 -19.79561 -18.67606 -18.27077 -17.82768 -17.71061 -17.27042 -17.07767 -16.73539 -16.43930 -15.87259 -15.82512 -15.35213 -15.32012 -15.05931 -14.93513 -14.86116 -14.66153 -14.45241 -14.32669 -13.63910 -13.33303 -13.26178 -13.07058 -12.96939 -12.75846 -12.60552 -12.52334 -12.20843 -11.96817 -11.88776 -11.83398 -11.15213 -11.02142 -10.91128 -10.79656 -10.50341 -10.07676 -10.00060 -9.54230 -8.96895 -8.49962 -6.20034 1.01875 1.32309 1.48925 1.49570 1.58549 1.65660 2.25973 2.27293 2.33906 2.75332 2.88365 2.96502 3.45772 3.53114 3.76582 3.86453 3.92070 3.96900 4.08185 4.11887 4.21318 4.26655 4.36522 4.50329 4.52937 4.55354 4.62354 4.72470 4.82778 4.91157 5.00280 5.09345 5.13936 5.37678 5.50289 5.72775 5.75446 5.92516 6.13117 6.18812 6.31825 6.60401 6.86084 6.95637 7.14409 7.30624 8.62493 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.014261 B = 0.002731 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.858690 B =10251.499922 C =11627.217629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.239 1.239 6 H -0.259 1.259 7 C -0.527 4.527 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.108 4.108 11 C 0.530 3.470 12 O -0.570 6.570 13 N -0.696 5.696 14 C 0.140 3.860 15 C 0.085 3.915 16 H 0.125 0.875 17 C 0.049 3.951 18 O -0.589 6.589 19 N -0.675 5.675 20 C 0.077 3.923 21 H 0.091 0.909 22 C -0.117 4.117 23 C -0.133 4.133 24 C 0.100 3.900 25 N -0.709 5.709 26 C 0.513 3.487 27 O -0.601 6.601 28 H 0.277 0.723 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.416 0.584 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.354 0.646 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.624 -28.032 2.981 32.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.163 1.163 6 H -0.184 1.184 7 C -0.675 4.675 8 H 0.081 0.919 9 S 0.048 5.952 10 C -0.259 4.259 11 C 0.315 3.685 12 O -0.449 6.449 13 N -0.349 5.349 14 C 0.015 3.985 15 C -0.025 4.025 16 H 0.143 0.857 17 C -0.031 4.031 18 O -0.397 6.397 19 N -0.310 5.310 20 C -0.035 4.035 21 H 0.109 0.891 22 C -0.156 4.156 23 C -0.171 4.171 24 C -0.023 4.023 25 N -0.359 5.359 26 C 0.300 3.700 27 O -0.482 6.482 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.253 0.747 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.247 0.753 37 H 0.176 0.824 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.127 0.873 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 15.885 -25.814 2.885 30.447 hybrid contribution 0.084 -1.295 -0.688 1.469 sum 15.969 -27.110 2.197 31.540 Atomic orbital electron populations 1.70016 1.07243 1.28977 1.49306 1.25540 0.95263 1.02177 0.92929 0.85878 0.80637 0.79676 0.80258 1.18537 1.16296 1.18370 1.22467 0.90223 0.96711 1.58067 0.91879 1.84735 1.06440 1.06436 1.97568 1.23240 0.95996 0.99370 1.07256 1.19979 0.89374 0.83527 0.75582 1.90679 1.59366 1.43987 1.50843 1.45519 1.08594 1.06414 1.74326 1.21197 0.80227 0.95550 1.01523 1.22046 0.91460 0.93272 0.95732 0.85681 1.22827 0.94740 0.96650 0.88848 1.86470 1.30526 1.76730 1.46023 1.60578 1.51024 1.12994 1.06427 1.21522 1.00700 0.88623 0.92674 0.89146 1.21826 0.94907 0.97710 1.01133 1.21911 1.03873 0.95322 0.95958 1.21713 0.89163 1.02404 0.88985 1.45506 1.28426 1.40821 1.21190 1.20522 0.80205 0.79550 0.89739 1.90750 1.43822 1.66500 1.47158 0.91384 0.86611 0.87384 0.74657 0.93265 0.91212 0.90956 0.92245 0.75324 0.82429 0.88863 0.90942 0.87347 0.90215 0.90896 0.88036 0.76264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.32 13.97 21.65 0.30 -56.02 16 2 C 0.05 2.75 5.50 84.86 0.47 3.21 16 3 Si 0.91 45.77 27.74 68.60 1.90 47.68 16 4 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 5 H -0.24 -12.07 6.74 99.48 0.67 -11.40 16 6 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.53 -31.13 10.04 67.95 0.68 -30.45 16 8 H 0.06 3.91 8.03 -2.91 -0.02 3.88 16 9 S -0.18 -9.27 18.55 -56.49 -1.05 -10.31 16 10 C -0.11 -4.21 6.16 71.24 0.44 -3.77 16 11 C 0.53 19.34 7.85 87.66 0.69 20.02 16 12 O -0.57 -25.77 15.86 -3.02 -0.05 -25.82 16 13 N -0.70 -17.83 5.39 -463.07 -2.50 -20.33 16 14 C 0.14 3.20 5.26 86.38 0.45 3.65 16 15 C 0.09 1.23 2.37 44.92 0.11 1.34 16 16 H 0.13 1.10 7.20 -2.39 -0.02 1.08 16 17 C 0.05 0.60 6.69 71.98 0.48 1.08 16 18 O -0.59 -10.10 12.05 -148.98 -1.80 -11.90 16 19 N -0.68 -11.76 5.49 -474.02 -2.60 -14.37 16 20 C 0.08 0.99 2.52 44.03 0.11 1.10 16 21 H 0.09 0.89 7.20 -2.39 -0.02 0.87 16 22 C -0.12 -0.95 5.43 30.74 0.17 -0.78 16 23 C -0.13 -0.50 6.02 30.69 0.18 -0.31 16 24 C 0.10 0.53 7.17 86.50 0.62 1.15 16 25 N -0.71 -8.47 5.45 -467.33 -2.55 -11.01 16 26 C 0.51 9.34 7.43 87.71 0.65 9.99 16 27 O -0.60 -16.56 16.65 -3.02 -0.05 -16.61 16 28 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 30 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 31 H 0.42 8.39 8.14 -92.71 -0.75 7.64 16 32 H 0.05 1.45 7.41 -2.39 -0.02 1.44 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 0.59 7.49 -2.38 -0.02 0.58 16 36 H 0.40 3.52 9.12 -74.06 -0.68 2.85 16 37 H 0.35 8.46 6.68 -89.69 -0.60 7.87 16 38 H 0.09 0.49 7.60 -2.38 -0.02 0.47 16 39 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 40 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.08 0.21 8.13 -2.39 -0.02 0.19 16 42 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.40 4.51 8.80 -92.70 -0.82 3.69 16 Total: -1.00 -85.14 373.77 -5.15 -90.29 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -1.82 Total: 22.16 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 5.05 Total: 6.23 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -7.34 Total: -101.72 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -1.89 Total: -54.32 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.90 Total: 47.68 kcal Atomic # 16 Polarization: -9.27 SS G_CDS: -1.05 Total: -10.31 kcal Total: -85.14 -5.15 -90.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278048310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.057 kcal (2) G-P(sol) polarization free energy of solvation -85.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds