Wall clock time and date at job start Sat Apr 11 2020 02:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86803 * 119.99628 * 2 1 4 4 H 1.48494 * 109.47248 * 274.97699 * 3 2 1 5 5 H 1.48500 * 109.47261 * 34.98183 * 3 2 1 6 6 H 1.48504 * 109.47046 * 154.98220 * 3 2 1 7 7 C 1.38989 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.03891 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31110 * 7 2 1 10 10 C 1.36487 * 126.06352 * 185.48980 * 9 7 2 11 11 C 1.35717 * 107.50105 * 179.97438 * 10 9 7 12 12 N 1.40494 * 126.08440 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00111 * 179.97438 * 12 11 10 14 14 O 1.21530 * 120.00026 * 359.97438 * 13 12 11 15 15 C 1.48288 * 120.00209 * 180.02562 * 13 12 11 16 16 C 1.42290 * 126.94165 * 179.97438 * 15 13 12 17 17 C 1.35303 * 103.92031 * 179.97438 * 16 15 13 18 18 C 1.50701 * 126.66095 * 179.97438 * 17 16 15 19 19 N 1.46907 * 109.46798 * 90.00639 * 18 17 16 20 20 C 1.48529 * 111.00148 * 52.60597 * 19 18 17 21 21 C 1.54940 * 103.22851 * 159.72239 * 20 19 18 22 22 C 1.54599 * 102.91908 * 322.58170 * 21 20 19 23 23 C 1.47908 * 110.99687 * 170.00212 * 19 18 17 24 24 O 1.34014 * 106.67593 * 0.02562 * 17 16 15 25 25 N 1.20907 * 111.84976 * 359.70735 * 24 17 16 26 26 C 1.40673 * 107.82706 * 359.97438 * 11 10 9 27 27 N 1.30896 * 108.38443 * 359.73996 * 26 11 10 28 28 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 29 29 H 1.07999 * 126.24599 * 359.97438 * 10 9 7 30 30 H 0.97007 * 119.99798 * 0.02562 * 12 11 10 31 31 H 1.07995 * 128.03456 * 359.97438 * 16 15 13 32 32 H 1.09004 * 109.47243 * 209.99772 * 18 17 16 33 33 H 1.08995 * 109.47561 * 330.00676 * 18 17 16 34 34 H 1.09002 * 110.66340 * 278.15311 * 20 19 18 35 35 H 1.08997 * 110.67243 * 41.28502 * 20 19 18 36 36 H 1.08998 * 110.72666 * 204.22577 * 21 20 19 37 37 H 1.09005 * 110.72420 * 80.93603 * 21 20 19 38 38 H 1.08997 * 110.30811 * 263.04578 * 22 21 20 39 39 H 1.08995 * 110.30865 * 140.87265 * 22 21 20 40 40 H 1.08997 * 109.91539 * 333.50139 * 23 19 18 41 41 H 1.08991 * 109.91688 * 94.60480 * 23 19 18 42 42 H 1.07993 * 125.80666 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3891 2.1073 -1.3947 5 1 1.5009 2.6200 0.8027 6 1 3.5931 1.4122 0.5921 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2061 -0.0966 9 7 1.3265 -2.3898 0.1190 10 6 1.8855 -3.6292 0.2391 11 6 0.8719 -4.5270 0.3307 12 7 1.0090 -5.9186 0.4667 13 6 -0.0869 -6.6990 0.5476 14 8 -1.1936 -6.1988 0.5034 15 6 0.0577 -8.1677 0.6917 16 6 -0.9907 -9.1247 0.7903 17 6 -0.3427 -10.3070 0.9035 18 6 -0.9729 -11.6690 1.0405 19 7 -1.1842 -12.2472 -0.2933 20 6 0.0706 -12.2256 -1.0877 21 6 -0.1814 -13.2974 -2.1779 22 6 -0.9644 -14.3899 -1.4140 23 6 -1.5767 -13.6701 -0.1981 24 8 0.9685 -10.0315 0.8712 25 7 1.1765 -8.8468 0.7485 26 6 -0.3403 -3.8162 0.2653 27 7 -0.0657 -2.5420 0.1450 28 1 -0.4850 0.8400 0.0004 29 1 2.9417 -3.8541 0.2578 30 1 1.8924 -6.3177 0.5031 31 1 -2.0561 -8.9481 0.7777 32 1 -0.3139 -12.3179 1.6175 33 1 -1.9308 -11.5764 1.5523 34 1 0.2228 -11.2455 -1.5398 35 1 0.9235 -12.5010 -0.4674 36 1 0.7615 -13.6920 -2.5562 37 1 -0.7829 -12.8880 -2.9895 38 1 -0.2889 -15.1796 -1.0854 39 1 -1.7515 -14.8024 -2.0452 40 1 -1.1872 -14.1018 0.7239 41 1 -2.6629 -13.7578 -0.2191 42 1 -1.3291 -4.2480 0.3107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813430607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:49:23 Heat of formation + Delta-G solvation = 125.093883 kcal Electronic energy + Delta-G solvation = -26842.423290 eV Core-core repulsion = 22828.309742 eV Total energy + Delta-G solvation = -4014.113548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.14964 -39.92586 -39.32164 -38.54231 -34.44574 -34.22897 -33.76352 -33.08466 -30.99628 -30.26742 -29.25871 -27.95181 -26.34036 -25.38262 -24.08017 -22.80480 -21.55260 -21.27602 -21.00905 -19.99476 -19.35382 -17.94873 -17.74737 -17.47624 -16.47611 -16.31471 -16.07125 -15.47880 -15.25307 -14.87351 -14.55602 -14.48666 -14.08008 -13.91369 -13.51754 -13.36577 -13.19303 -13.05202 -12.91141 -12.34650 -12.04559 -11.79447 -11.71014 -11.53188 -11.51821 -11.43891 -11.28430 -10.99264 -10.98099 -10.53739 -10.50770 -10.18655 -9.72776 -9.55498 -9.19832 -8.90547 -8.84746 -8.09120 -6.74578 -6.58366 -4.24971 1.06864 1.62335 2.72777 2.93326 3.04319 3.10158 3.26737 3.30506 3.59547 3.72489 3.82366 4.00225 4.19641 4.23341 4.40817 4.45476 4.53671 4.70123 4.82077 4.85654 4.95983 4.99514 5.08182 5.12706 5.21058 5.31957 5.37460 5.42114 5.44659 5.57383 5.68073 5.76182 5.82532 6.22888 6.35382 6.41684 6.43732 6.83627 6.92266 7.03335 7.19536 7.82331 7.90070 8.13280 8.22233 8.54930 8.74606 9.34651 9.63197 10.37847 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.038873 B = 0.001906 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.123293 B =14687.078720 C =14821.868666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.140 5.140 10 C -0.079 4.079 11 C -0.065 4.065 12 N -0.602 5.602 13 C 0.576 3.424 14 O -0.519 6.519 15 C -0.010 4.010 16 C -0.154 4.154 17 C -0.045 4.045 18 C 0.132 3.868 19 N -0.514 5.514 20 C 0.030 3.970 21 C -0.124 4.124 22 C -0.131 4.131 23 C 0.035 3.965 24 O 0.116 5.884 25 N -0.335 5.335 26 C -0.028 4.028 27 N -0.260 5.260 28 H 0.275 0.725 29 H 0.148 0.852 30 H 0.403 0.597 31 H 0.182 0.818 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 -26.416 0.407 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.093 4.907 10 C -0.230 4.230 11 C -0.170 4.170 12 N -0.244 5.244 13 C 0.359 3.641 14 O -0.394 6.394 15 C -0.169 4.169 16 C -0.177 4.177 17 C -0.109 4.109 18 C 0.003 3.997 19 N -0.239 5.239 20 C -0.097 4.097 21 C -0.162 4.162 22 C -0.169 4.169 23 C -0.092 4.092 24 O 0.041 5.959 25 N -0.036 5.036 26 C -0.204 4.204 27 N -0.091 5.091 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.237 0.763 31 H 0.199 0.801 32 H 0.081 0.919 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.161 -23.980 -0.021 23.981 hybrid contribution 1.110 -0.809 0.543 1.477 sum 0.950 -24.789 0.522 24.813 Atomic orbital electron populations 1.70220 1.06181 1.28083 1.34930 1.25663 0.95707 1.00333 0.95413 0.85805 0.79516 0.79944 0.78861 1.19628 1.19999 1.18714 1.19902 0.92186 0.80631 1.52786 0.86507 1.44568 1.04029 1.03692 1.38439 1.21267 0.96870 0.85676 1.19192 1.17245 0.94594 0.81067 1.24137 1.42297 1.08123 1.05337 1.68626 1.16655 0.84990 0.82444 0.79971 1.90703 1.25256 1.72658 1.50745 1.23671 0.89634 0.97328 1.06297 1.22429 1.01929 0.89222 1.04157 1.24084 0.83149 0.98136 1.05482 1.20720 1.00102 0.87230 0.91630 1.64979 1.29875 1.16473 1.12572 1.23311 0.90827 1.00364 0.95200 1.22479 1.00420 0.95346 0.97945 1.22403 0.99869 0.97956 0.96692 1.22909 1.01534 0.86915 0.97865 1.84756 1.25458 1.19714 1.65958 1.74170 1.23419 0.89670 1.16374 1.24123 0.97906 0.90897 1.07484 1.78257 0.90248 1.14948 1.25645 0.91393 0.83501 0.76328 0.80065 0.91944 0.86906 0.89961 0.92997 0.90824 0.90522 0.91355 0.90773 0.93292 0.89774 0.80615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.55 11.83 55.50 0.66 -20.89 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 3 Si 0.94 19.00 29.56 -169.99 -5.02 13.98 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.32 -8.61 10.24 -14.82 -0.15 -8.76 16 8 H 0.12 2.78 7.84 -52.49 -0.41 2.37 16 9 N -0.14 -3.90 3.74 -11.41 -0.04 -3.94 16 10 C -0.08 -1.91 11.50 -16.38 -0.19 -2.10 16 11 C -0.06 -1.56 6.90 -83.87 -0.58 -2.13 16 12 N -0.60 -11.88 5.46 -10.73 -0.06 -11.93 16 13 C 0.58 11.20 7.82 -12.13 -0.09 11.11 16 14 O -0.52 -11.57 14.10 5.34 0.08 -11.49 16 15 C -0.01 -0.15 7.19 -82.53 -0.59 -0.75 16 16 C -0.15 -1.95 10.92 -39.07 -0.43 -2.38 16 17 C -0.05 -0.47 5.75 -35.35 -0.20 -0.67 16 18 C 0.13 0.92 5.59 -4.97 -0.03 0.89 16 19 N -0.51 -3.94 5.39 -231.88 -1.25 -5.19 16 20 C 0.03 0.24 5.43 -1.90 -0.01 0.23 16 21 C -0.12 -0.78 7.06 -24.87 -0.18 -0.95 16 22 C -0.13 -0.66 6.93 -25.37 -0.18 -0.84 16 23 C 0.04 0.20 6.70 -2.75 -0.02 0.18 16 24 O 0.12 1.37 10.98 17.25 0.19 1.56 16 25 N -0.33 -4.78 11.84 33.29 0.39 -4.38 16 26 C -0.03 -0.76 10.85 -17.03 -0.18 -0.95 16 27 N -0.26 -7.66 10.41 30.80 0.32 -7.34 16 28 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.15 2.98 8.06 -52.49 -0.42 2.56 16 30 H 0.40 6.76 8.58 -40.82 -0.35 6.41 16 31 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.06 0.35 7.81 -51.93 -0.41 -0.06 16 33 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 35 H 0.05 0.39 8.02 -51.93 -0.42 -0.03 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.22 7.57 -51.93 -0.39 -0.17 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.18 4.64 5.92 -52.49 -0.31 4.33 16 LS Contribution 359.90 15.07 5.42 5.42 Total: -1.00 -33.43 359.90 -7.46 -40.89 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.21 Total: 9.33 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.93 Total: -6.02 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.02 Total: -53.68 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.26 Total: -9.93 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.43 -7.46 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813430607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.979 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds