Wall clock time and date at job start Sat Apr 11 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34490 * 126.83615 * 2 1 4 4 N 1.36442 * 108.86014 * 180.23786 * 3 2 1 5 5 H 0.97004 * 124.85162 * 179.72647 * 4 3 2 6 6 C 1.34666 * 110.29747 * 359.73557 * 4 3 2 7 7 C 1.50698 * 125.80354 * 179.97438 * 6 4 3 8 8 C 1.50702 * 109.47267 * 264.99852 * 7 6 4 9 9 N 1.34776 * 119.99894 * 180.02562 * 8 7 6 10 10 O 1.21278 * 119.99874 * 359.97438 * 8 7 6 11 11 C 1.36778 * 108.39551 * 359.97438 * 6 4 3 12 12 C 1.47241 * 126.94333 * 179.97438 * 11 6 4 13 13 O 1.21646 * 120.00447 * 89.99791 * 12 11 6 14 14 N 1.34782 * 119.99938 * 269.99554 * 12 11 6 15 15 C 1.40112 * 119.99905 * 180.02562 * 14 12 11 16 16 C 1.40421 * 125.97634 * 359.97438 * 15 14 12 17 17 C 1.35241 * 107.86585 * 179.75952 * 16 15 14 18 18 N 1.34962 * 107.86078 * 0.42772 * 17 16 15 19 19 C 1.46500 * 125.97410 * 179.83477 * 18 17 16 20 20 C 1.50706 * 109.47299 * 124.71196 * 19 18 17 21 21 H 1.07998 * 119.99503 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00434 * 180.02562 * 20 19 18 23 23 N 1.31516 * 119.99826 * 359.72891 * 22 20 19 24 24 Si 1.86800 * 120.00406 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72558 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72681 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72491 * 24 22 20 28 28 N 1.31226 * 125.97412 * 180.02562 * 15 14 12 29 29 H 1.08991 * 109.47493 * 270.19406 * 1 2 3 30 30 H 1.09002 * 109.46519 * 30.19289 * 1 2 3 31 31 H 1.08999 * 109.47067 * 150.18879 * 1 2 3 32 32 H 1.08007 * 125.56561 * 359.97036 * 3 2 1 33 33 H 1.09002 * 109.47211 * 24.99667 * 7 6 4 34 34 H 1.08997 * 109.47521 * 144.99767 * 7 6 4 35 35 H 0.96991 * 120.00352 * 359.97438 * 9 8 7 36 36 H 0.97010 * 119.99351 * 179.97438 * 9 8 7 37 37 H 0.96990 * 119.99914 * 0.02562 * 14 12 11 38 38 H 1.08003 * 126.06753 * 0.05912 * 16 15 14 39 39 H 1.07998 * 126.06562 * 180.28464 * 17 16 15 40 40 H 1.09004 * 109.47078 * 4.71958 * 19 18 17 41 41 H 1.08993 * 109.47364 * 244.71729 * 19 18 17 42 42 H 0.97000 * 120.00236 * 0.27947 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0054 5 1 4.3840 1.2414 -0.0103 6 6 3.6657 -0.6902 -0.0031 7 6 4.9226 -1.5216 -0.0080 8 6 5.2659 -1.9048 -1.4245 9 7 6.3577 -2.6546 -1.6739 10 8 4.5592 -1.5392 -2.3398 11 6 2.3864 -1.1741 0.0045 12 6 1.9749 -2.5878 0.0088 13 8 1.8106 -3.1704 1.0640 14 7 1.7803 -3.2366 -1.1564 15 6 1.3883 -4.5818 -1.1523 16 6 1.1639 -5.3721 -0.0135 17 6 0.7967 -6.6053 -0.4301 18 7 0.7968 -6.6033 -1.7797 19 6 0.4618 -7.7394 -2.6419 20 6 -0.6391 -7.3422 -3.5913 21 1 -1.0481 -6.3432 -3.5562 22 6 -1.1242 -8.2539 -4.5047 23 7 -0.6225 -9.4688 -4.5510 24 14 -2.4884 -7.7613 -5.6819 25 1 -2.8238 -8.9111 -6.5598 26 1 -3.6910 -7.3628 -4.9070 27 1 -2.0348 -6.6185 -6.5146 28 7 1.1675 -5.3236 -2.2120 29 1 -0.3634 0.0035 1.0276 30 1 -0.3632 0.8883 -0.5169 31 1 -0.3633 -0.8917 -0.5109 32 1 1.9868 2.1059 -0.0005 33 1 5.7417 -0.9444 0.4209 34 1 4.7644 -2.4230 0.5840 35 1 6.9227 -2.9473 -0.9419 36 1 6.5784 -2.9015 -2.5858 37 1 1.9116 -2.7723 -1.9978 38 1 1.2620 -5.0507 1.0129 39 1 0.5497 -7.4434 0.2046 40 1 0.1277 -8.5756 -2.0277 41 1 1.3429 -8.0359 -3.2109 42 1 0.0860 -9.7246 -3.9399 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362166380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:49:06 Heat of formation + Delta-G solvation = 16.682365 kcal Electronic energy + Delta-G solvation = -27775.168102 eV Core-core repulsion = 23756.353478 eV Total energy + Delta-G solvation = -4018.814624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.53346 -42.10228 -40.26630 -40.11805 -36.38799 -35.47793 -34.73492 -33.79064 -33.01870 -32.28833 -31.03312 -29.46999 -28.14565 -26.89156 -25.42649 -24.23778 -22.51998 -22.08859 -21.50258 -20.40817 -20.23130 -19.24881 -18.93284 -18.27405 -17.96058 -17.67537 -17.36249 -16.94634 -16.32196 -16.20931 -15.72556 -15.58691 -15.41176 -15.14842 -14.89836 -14.60330 -14.35089 -14.21139 -13.99287 -13.90751 -13.72675 -13.56790 -13.42545 -13.24156 -13.06389 -12.62897 -12.27646 -11.99071 -11.96034 -11.66738 -11.16894 -11.06596 -11.01043 -10.70606 -10.67919 -9.85124 -9.56149 -9.22510 -9.08233 -8.79274 -6.57134 0.83003 0.93435 1.33206 1.39941 1.49782 1.56327 1.57853 1.68061 1.78415 2.14955 2.21959 2.42961 2.49126 2.73837 2.99657 3.49500 3.68922 3.94344 4.04047 4.11712 4.12688 4.22703 4.36795 4.53172 4.54275 4.63364 4.73622 4.78924 4.81840 4.86697 4.93474 5.06153 5.12606 5.25556 5.54073 5.77061 5.81046 5.83641 5.91875 5.97444 6.17312 6.26176 6.40655 6.41200 6.69675 6.94401 7.03234 7.18150 7.29900 8.56989 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013988 B = 0.002971 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.296697 B = 9421.840234 C = 9933.837885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.161 4.161 3 C 0.015 3.985 4 N -0.526 5.526 5 H 0.435 0.565 6 C 0.096 3.904 7 C -0.082 4.082 8 C 0.510 3.490 9 N -0.839 5.839 10 O -0.576 6.576 11 C -0.241 4.241 12 C 0.608 3.392 13 O -0.546 6.546 14 N -0.619 5.619 15 C 0.266 3.734 16 C -0.290 4.290 17 C 0.058 3.942 18 N -0.342 5.342 19 C 0.260 3.740 20 C -0.624 4.624 21 H 0.042 0.958 22 C -0.017 4.017 23 N -0.922 5.922 24 Si 1.119 2.881 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.278 1.278 28 N -0.348 5.348 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.211 0.789 33 H 0.156 0.844 34 H 0.117 0.883 35 H 0.419 0.581 36 H 0.406 0.594 37 H 0.416 0.584 38 H 0.171 0.829 39 H 0.206 0.794 40 H 0.057 0.943 41 H 0.016 0.984 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.219 22.432 13.028 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.168 4.168 3 C -0.115 4.115 4 N -0.122 5.122 5 H 0.276 0.724 6 C -0.022 4.022 7 C -0.122 4.122 8 C 0.295 3.705 9 N -0.403 5.403 10 O -0.455 6.455 11 C -0.252 4.252 12 C 0.396 3.604 13 O -0.422 6.422 14 N -0.266 5.266 15 C 0.011 3.989 16 C -0.321 4.321 17 C -0.090 4.090 18 N -0.124 5.124 19 C 0.141 3.859 20 C -0.662 4.662 21 H 0.061 0.939 22 C -0.217 4.217 23 N -0.558 5.558 24 Si 0.940 3.060 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.203 1.203 28 N -0.179 5.179 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.228 0.772 33 H 0.173 0.827 34 H 0.135 0.865 35 H 0.250 0.750 36 H 0.237 0.763 37 H 0.252 0.748 38 H 0.188 0.812 39 H 0.222 0.778 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.702 21.767 10.788 27.891 hybrid contribution 1.680 0.177 1.437 2.218 sum 15.382 21.944 12.225 29.455 Atomic orbital electron populations 1.20139 0.89523 1.02155 1.02024 1.20655 0.95751 0.90569 1.09778 1.21978 0.81592 0.99900 1.07985 1.41245 1.09082 1.04886 1.56954 0.72447 1.19289 0.93502 0.84536 1.04877 1.20383 0.95623 1.01679 0.94541 1.20800 0.80559 0.77813 0.91373 1.43728 1.27961 1.54676 1.13972 1.90793 1.51064 1.55790 1.47883 1.19732 0.94734 0.90384 1.20345 1.17953 0.74757 0.86059 0.81644 1.90667 1.50982 1.68726 1.31788 1.42833 1.66180 1.06700 1.10872 1.19545 0.99749 0.86706 0.92892 1.21735 1.17694 0.92717 0.99928 1.23203 1.00421 1.00670 0.84724 1.48595 1.50309 1.08125 1.05326 1.19426 0.95591 0.81264 0.89636 1.22297 1.21554 1.00824 1.21478 0.93937 1.27261 1.02556 0.92700 0.99192 1.70945 1.26730 1.19642 1.38472 0.82897 0.72996 0.75809 0.74345 1.19664 1.19583 1.20343 1.77320 1.27135 0.91756 1.21678 0.91385 0.89192 0.94746 0.77235 0.82657 0.86469 0.74990 0.76288 0.74791 0.81220 0.77752 0.92543 0.96581 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.35 71.24 0.74 -1.05 16 2 C -0.16 -3.73 6.36 -18.51 -0.12 -3.85 16 3 C 0.01 0.22 11.82 83.12 0.98 1.20 16 4 N -0.53 -6.81 5.90 -182.71 -1.08 -7.89 16 5 H 0.44 2.08 8.96 -92.71 -0.83 1.25 16 6 C 0.10 1.90 5.67 41.78 0.24 2.14 16 7 C -0.08 -1.14 6.01 29.10 0.17 -0.97 16 8 C 0.51 9.81 8.09 87.66 0.71 10.52 16 9 N -0.84 -10.08 8.87 -173.53 -1.54 -11.62 16 10 O -0.58 -16.91 16.87 -3.02 -0.05 -16.96 16 11 C -0.24 -6.63 6.05 -19.04 -0.12 -6.74 16 12 C 0.61 21.16 7.27 86.61 0.63 21.79 16 13 O -0.55 -21.36 14.23 -4.18 -0.06 -21.42 16 14 N -0.62 -23.60 5.44 -310.59 -1.69 -25.30 16 15 C 0.27 11.88 8.11 133.34 1.08 12.96 16 16 C -0.29 -12.15 9.60 22.11 0.21 -11.94 16 17 C 0.06 2.40 11.43 83.52 0.96 3.36 16 18 N -0.34 -16.96 3.67 -351.84 -1.29 -18.25 16 19 C 0.26 13.88 5.57 85.64 0.48 14.36 16 20 C -0.62 -36.89 9.24 25.60 0.24 -36.66 16 21 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 22 C -0.02 -1.00 5.46 84.65 0.46 -0.54 16 23 N -0.92 -54.98 13.65 21.45 0.29 -54.69 16 24 Si 1.12 51.41 29.90 68.60 2.05 53.46 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 28 N -0.35 -17.75 12.42 -54.47 -0.68 -18.42 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.21 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.16 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.12 1.77 8.05 -2.39 -0.02 1.75 16 35 H 0.42 1.94 8.83 -92.71 -0.82 1.12 16 36 H 0.41 5.07 8.93 -92.70 -0.83 4.24 16 37 H 0.42 15.61 8.81 -92.72 -0.82 14.79 16 38 H 0.17 6.81 5.91 -2.91 -0.02 6.79 16 39 H 0.21 6.57 8.06 -2.91 -0.02 6.54 16 40 H 0.06 2.86 7.94 -2.39 -0.02 2.84 16 41 H 0.02 0.91 8.00 -2.39 -0.02 0.89 16 42 H 0.26 15.37 7.22 -92.71 -0.67 14.70 16 Total: -1.00 -87.92 372.46 0.55 -87.37 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -2.06 Total: 29.14 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: 6.66 Total: 4.58 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -5.98 Total: -136.16 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.11 Total: -38.38 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -87.92 0.55 -87.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362166380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.050 kcal (2) G-P(sol) polarization free energy of solvation -87.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds