Wall clock time and date at job start Sat Apr 11 2020 02:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.36356 * 125.84293 * 274.79540 * 3 2 1 5 5 C 1.41426 * 107.01249 * 180.13436 * 4 3 2 6 6 C 1.47371 * 126.46990 * 179.83695 * 5 4 3 7 7 O 1.21619 * 119.99839 * 359.70665 * 6 5 4 8 8 N 1.34779 * 120.00532 * 179.71235 * 6 5 4 9 9 C 1.46500 * 120.00417 * 179.97438 * 8 6 5 10 10 H 1.08995 * 112.85029 * 336.19971 * 9 8 6 11 11 C 1.53778 * 113.68482 * 107.46533 * 9 8 6 12 12 C 1.53781 * 87.07888 * 139.99554 * 11 9 8 13 13 H 1.08994 * 113.69299 * 89.12435 * 12 11 9 14 14 N 1.46907 * 113.61302 * 220.01905 * 12 11 9 15 15 C 1.46896 * 110.99733 * 252.49343 * 14 12 11 16 16 C 1.50703 * 109.47254 * 180.02562 * 15 14 12 17 17 O 1.21293 * 119.99482 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00290 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99729 * 180.27555 * 18 16 15 20 20 H 1.08002 * 120.00496 * 359.72414 * 19 18 16 21 21 C 1.38958 * 120.00096 * 179.72242 * 19 18 16 22 22 N 1.31406 * 120.00295 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99484 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.47210 * 90.00351 * 23 21 19 25 25 H 1.48506 * 109.47251 * 210.00025 * 23 21 19 26 26 H 1.48504 * 109.47424 * 330.00119 * 23 21 19 27 27 C 1.53775 * 113.61408 * 205.00066 * 9 8 6 28 28 C 1.38126 * 107.06443 * 359.57359 * 5 4 3 29 29 N 1.34425 * 108.38569 * 0.26133 * 28 5 4 30 30 H 0.97007 * 125.39062 * 180.02562 * 29 28 5 31 31 H 1.07997 * 126.49163 * 359.96817 * 4 3 2 32 32 H 0.97005 * 119.98998 * 0.02562 * 8 6 5 33 33 H 1.09001 * 113.61923 * 25.44953 * 11 9 8 34 34 H 1.09004 * 113.61445 * 254.54117 * 11 9 8 35 35 H 1.00897 * 111.00241 * 16.45005 * 14 12 11 36 36 H 1.08998 * 109.47322 * 60.00099 * 15 14 12 37 37 H 1.09002 * 109.47668 * 300.00296 * 15 14 12 38 38 H 0.97001 * 119.99727 * 359.97438 * 18 16 15 39 39 H 0.97004 * 119.99848 * 179.97438 * 22 21 19 40 40 H 1.08999 * 113.61341 * 105.38736 * 27 9 8 41 41 H 1.09001 * 113.61888 * 334.48726 * 27 9 8 42 42 H 1.08001 * 125.81037 * 180.22997 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3665 -0.0914 1.1015 5 6 4.7051 -0.0495 0.6469 6 6 5.9167 -0.1146 1.4832 7 8 5.8170 -0.2093 2.6916 8 7 7.1352 -0.0691 0.9091 9 6 8.3397 -0.1332 1.7406 10 1 8.1643 0.1933 2.7656 11 6 9.0890 -1.4723 1.6404 12 6 10.3914 -0.6550 1.6594 13 1 10.7782 -0.4705 2.6616 14 7 11.4166 -1.1601 0.7363 15 6 12.5101 -1.8117 1.4696 16 6 13.5404 -2.3153 0.4919 17 8 13.3794 -2.1482 -0.6986 18 7 14.6403 -2.9522 0.9403 19 6 15.5803 -3.4053 0.0512 20 1 15.4374 -3.2558 -1.0088 21 6 16.7171 -4.0569 0.5138 22 7 17.6184 -4.4908 -0.3384 23 14 16.9647 -4.3148 2.3473 24 1 16.3607 -5.6099 2.7510 25 1 18.4178 -4.3296 2.6533 26 1 16.3126 -3.2099 3.0951 27 6 9.5727 0.5156 1.0899 28 6 4.6625 0.0579 -0.7296 29 7 3.3744 0.0876 -1.1129 30 1 3.0622 0.1586 -2.0286 31 1 3.0388 -0.1771 2.1269 32 1 7.2146 0.0069 -0.0547 33 1 8.9179 -1.9993 0.7017 34 1 8.9613 -2.1107 2.5147 35 1 11.0135 -1.7867 0.0560 36 1 12.1140 -2.6490 2.0440 37 1 12.9726 -1.0933 2.1464 38 1 14.7689 -3.0861 1.8924 39 1 18.4122 -4.9453 -0.0154 40 1 9.8355 1.4822 1.5198 41 1 9.5338 0.5322 0.0007 42 1 5.5184 0.1098 -1.3861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661589708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:50:11 Heat of formation + Delta-G solvation = 35.642925 kcal Electronic energy + Delta-G solvation = -25742.453201 eV Core-core repulsion = 21724.460768 eV Total energy + Delta-G solvation = -4017.992433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.10840 -40.16095 -38.71802 -38.05862 -37.01020 -34.69513 -33.92609 -32.78890 -31.92658 -31.64366 -30.29278 -27.08523 -25.83737 -24.83578 -23.71451 -23.16564 -22.01733 -20.67557 -20.54753 -19.70174 -19.26587 -18.28894 -17.06977 -16.70698 -16.34386 -15.88949 -15.74711 -15.55551 -15.08890 -14.84023 -14.75348 -14.64411 -14.34614 -13.87641 -13.65822 -13.55120 -13.41143 -13.16680 -13.13594 -12.92798 -12.82771 -12.61895 -12.36793 -12.11640 -11.79428 -11.33179 -11.19590 -11.03299 -10.90165 -10.60123 -10.20593 -9.98545 -9.80200 -9.58385 -9.27548 -9.00112 -8.59357 -8.20451 -8.10886 -6.32353 -3.83818 0.74316 1.27873 1.66725 2.53080 2.80010 2.87711 3.02304 3.06240 3.14808 3.15636 3.44218 3.73027 4.08388 4.12001 4.23603 4.28784 4.39250 4.50868 4.61428 4.71376 4.77448 4.97037 5.07170 5.21303 5.30565 5.41062 5.57112 5.59212 5.63873 5.73999 5.81782 5.85235 5.87681 5.89520 5.96449 5.99222 6.33861 6.46429 6.84942 7.11157 7.27097 7.54728 7.57546 8.00242 8.13222 8.58492 8.93715 9.41337 9.81396 10.80727 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.031403 B = 0.001589 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.420978 B =17621.126025 C =17958.692362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.278 3.722 3 C 0.044 3.956 4 C -0.047 4.047 5 C -0.225 4.225 6 C 0.589 3.411 7 O -0.541 6.541 8 N -0.715 5.715 9 C 0.124 3.876 10 H 0.116 0.884 11 C -0.181 4.181 12 C 0.070 3.930 13 H 0.100 0.900 14 N -0.655 5.655 15 C 0.047 3.953 16 C 0.449 3.551 17 O -0.567 6.567 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.119 0.881 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.133 4.133 28 C 0.086 3.914 29 N -0.518 5.518 30 H 0.428 0.572 31 H 0.161 0.839 32 H 0.399 0.601 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.352 0.648 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.371 0.629 39 H 0.273 0.727 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.857 10.221 2.442 27.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.078 5.078 2 C -0.038 4.038 3 C -0.067 4.067 4 C -0.075 4.075 5 C -0.234 4.234 6 C 0.377 3.623 7 O -0.418 6.418 8 N -0.365 5.365 9 C 0.019 3.981 10 H 0.134 0.866 11 C -0.222 4.222 12 C -0.042 4.042 13 H 0.118 0.882 14 N -0.286 5.286 15 C -0.086 4.086 16 C 0.235 3.765 17 O -0.449 6.449 18 N -0.230 5.230 19 C -0.435 4.435 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.194 1.194 27 C -0.172 4.172 28 C -0.057 4.057 29 N -0.112 5.112 30 H 0.266 0.734 31 H 0.179 0.821 32 H 0.233 0.767 33 H 0.106 0.894 34 H 0.090 0.910 35 H 0.173 0.827 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -27.327 10.758 2.260 29.455 hybrid contribution 0.387 -1.111 0.722 1.380 sum -26.940 9.647 2.982 28.771 Atomic orbital electron populations 1.81353 1.11241 1.10082 1.05166 1.24275 0.90788 0.93531 0.95213 1.15169 0.83361 1.20563 0.87637 1.21118 0.90348 0.98118 0.97961 1.19656 0.94037 1.17422 0.92330 1.17359 0.82271 0.75612 0.87088 1.90801 1.86815 1.49962 1.14242 1.45798 1.05224 1.75070 1.10395 1.22400 0.82251 0.96944 0.96495 0.86600 1.24247 0.97342 0.97568 1.03052 1.22828 0.89209 0.95590 0.96571 0.88233 1.60006 1.10042 1.43271 1.15264 1.21759 0.93015 0.97889 0.95946 1.19739 0.83880 0.83415 0.89471 1.90558 1.77817 1.59893 1.16594 1.42213 1.19996 1.52553 1.08203 1.19433 0.98042 1.33416 0.92578 0.86298 1.25038 0.95724 0.97149 0.98196 1.69620 1.10243 1.38179 1.34076 0.86674 0.78814 0.78925 0.84984 1.19659 1.20169 1.19437 1.23472 0.93278 0.98695 1.01727 1.22551 0.86377 1.01138 0.95602 1.41588 1.05685 1.54976 1.08965 0.73351 0.82116 0.76671 0.89370 0.91011 0.82686 0.93594 0.89414 0.79664 0.91609 0.90548 0.88973 0.79426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -3.77 18.54 41.84 0.78 -3.00 16 2 C 0.28 1.92 15.88 -22.47 -0.36 1.56 16 3 C 0.04 0.22 6.90 -83.98 -0.58 -0.36 16 4 C -0.05 -0.30 10.59 -39.05 -0.41 -0.71 16 5 C -0.22 -1.37 6.13 -105.01 -0.64 -2.02 16 6 C 0.59 5.18 7.81 -12.54 -0.10 5.08 16 7 O -0.54 -7.04 16.52 5.26 0.09 -6.95 16 8 N -0.71 -4.71 5.35 -54.11 -0.29 -5.00 16 9 C 0.12 1.00 4.24 -67.12 -0.28 0.71 16 10 H 0.12 1.07 7.46 -51.93 -0.39 0.69 16 11 C -0.18 -1.59 7.50 -25.92 -0.19 -1.79 16 12 C 0.07 0.69 4.18 -66.90 -0.28 0.41 16 13 H 0.10 0.93 7.87 -51.93 -0.41 0.52 16 14 N -0.65 -9.04 6.24 -107.13 -0.67 -9.71 16 15 C 0.05 0.72 6.01 -4.98 -0.03 0.69 16 16 C 0.45 9.85 7.82 -10.98 -0.09 9.76 16 17 O -0.57 -14.74 15.78 5.55 0.09 -14.65 16 18 N -0.59 -13.74 5.09 -10.96 -0.06 -13.80 16 19 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.46 13.96 55.50 0.77 -24.68 16 23 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 27 C -0.13 -1.07 7.63 -25.92 -0.20 -1.27 16 28 C 0.09 0.21 11.43 -16.46 -0.19 0.02 16 29 N -0.52 -1.12 6.02 -10.29 -0.06 -1.18 16 30 H 0.43 -0.33 8.96 -40.82 -0.37 -0.69 16 31 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.40 1.45 7.64 -40.82 -0.31 1.14 16 33 H 0.09 0.77 7.82 -51.93 -0.41 0.36 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.35 5.03 7.90 -39.29 -0.31 4.72 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.22 8.13 -51.93 -0.42 0.80 16 38 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 42 H 0.19 -0.23 7.44 -52.49 -0.39 -0.62 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -37.41 373.02 -6.95 -44.37 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -4.91 Total: 10.18 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -3.60 Total: 4.44 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.47 Total: -57.37 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.17 Total: -21.61 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.41 -6.95 -44.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661589708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.008 kcal (2) G-P(sol) polarization free energy of solvation -37.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds