Wall clock time and date at job start Sat Apr 11 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 119.99924 * 2 1 4 4 H 1.07997 * 119.99625 * 204.21837 * 3 2 1 5 5 C 1.38807 * 120.00064 * 24.21522 * 3 2 1 6 6 N 1.31618 * 120.00096 * 9.00907 * 5 3 2 7 7 Si 1.86800 * 119.99919 * 189.00255 * 5 3 2 8 8 H 1.48503 * 109.46828 * 60.00425 * 7 5 3 9 9 H 1.48501 * 109.46955 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47290 * 300.00268 * 7 5 3 11 11 C 1.46494 * 119.99925 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.64193 * 178.31132 * 11 2 1 13 13 C 1.55155 * 110.72227 * 54.97455 * 11 2 1 14 14 C 1.55123 * 101.48770 * 205.96695 * 13 11 2 15 15 N 1.47421 * 104.72301 * 37.29850 * 14 13 11 16 16 C 1.34778 * 125.65025 * 155.81677 * 15 14 13 17 17 O 1.21641 * 120.00049 * 184.94361 * 16 15 14 18 18 C 1.47199 * 120.00085 * 4.93495 * 16 15 14 19 19 C 1.38847 * 120.90072 * 35.45086 * 18 16 15 20 20 C 1.39932 * 119.43402 * 179.97438 * 19 18 16 21 21 C 1.35022 * 121.26918 * 0.25518 * 20 19 18 22 22 N 1.36257 * 121.57898 * 359.47530 * 21 20 19 23 23 C 1.36367 * 133.87768 * 180.21147 * 22 21 20 24 24 O 1.35703 * 126.33642 * 0.29646 * 23 22 21 25 25 N 1.31108 * 107.32862 * 180.27710 * 23 22 21 26 26 N 1.28692 * 110.31622 * 359.97438 * 25 23 22 27 27 C 1.31482 * 109.67020 * 359.97438 * 26 25 23 28 28 C 1.47021 * 108.70261 * 335.55072 * 15 14 13 29 29 H 1.09002 * 109.47418 * 275.08685 * 1 2 3 30 30 H 1.09003 * 109.47406 * 35.08056 * 1 2 3 31 31 H 1.09000 * 109.47251 * 155.08372 * 1 2 3 32 32 H 0.97001 * 120.00195 * 180.02562 * 6 5 3 33 33 H 1.08999 * 111.00389 * 324.21542 * 13 11 2 34 34 H 1.09008 * 111.00377 * 88.02366 * 13 11 2 35 35 H 1.08997 * 110.49980 * 278.45181 * 14 13 11 36 36 H 1.09001 * 110.34187 * 156.06107 * 14 13 11 37 37 H 1.08001 * 120.28530 * 359.97438 * 19 18 16 38 38 H 1.08000 * 119.36900 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.20858 * 179.74602 * 21 20 19 40 40 H 0.96702 * 114.00144 * 90.00592 * 24 23 22 41 41 H 1.08998 * 109.88620 * 120.70322 * 28 15 14 42 42 H 1.08997 * 109.88229 * 241.87287 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1583 1.2271 -0.3837 5 6 1.5472 2.3352 0.4931 6 7 0.3930 2.2558 1.1205 7 14 2.3748 3.9944 0.2663 8 1 2.5414 4.2704 -1.1834 9 1 1.5346 5.0545 0.8791 10 1 3.7065 3.9773 0.9232 11 6 2.1974 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0296 13 6 1.7506 -2.1611 -1.1874 14 6 2.0691 -3.5792 -0.6454 15 7 1.7323 -3.5166 0.7885 16 6 1.4056 -4.5684 1.5653 17 8 1.0580 -4.3892 2.7171 18 6 1.4691 -5.9342 1.0198 19 6 2.4531 -6.2929 0.1083 20 6 2.4852 -7.6000 -0.3902 21 6 1.5739 -8.5192 -0.0058 22 7 0.5918 -8.2192 0.8897 23 6 -0.4306 -8.9306 1.4450 24 8 -0.7249 -10.2339 1.2079 25 7 -1.0762 -8.1225 2.2507 26 7 -0.5335 -6.9556 2.2423 27 6 0.4968 -6.9526 1.4255 28 6 1.8182 -2.1176 1.2323 29 1 -0.3634 0.0911 1.0236 30 1 -0.3634 0.8410 -0.5906 31 1 -0.3634 -0.9320 -0.4329 32 1 -0.0282 3.0589 1.4647 33 1 0.6849 -2.0446 -1.3844 34 1 2.3368 -1.9448 -2.0806 35 1 3.1262 -3.8097 -0.7771 36 1 1.4521 -4.3243 -1.1478 37 1 3.1876 -5.5693 -0.2132 38 1 3.2508 -7.8778 -1.0994 39 1 1.6273 -9.5173 -0.4148 40 1 -0.2815 -10.8522 1.8047 41 1 0.8540 -1.7930 1.6236 42 1 2.5847 -2.0189 2.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972718928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:51:31 Heat of formation + Delta-G solvation = 93.537027 kcal Electronic energy + Delta-G solvation = -28114.554333 eV Core-core repulsion = 24099.072376 eV Total energy + Delta-G solvation = -4015.481956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.82742 -40.02391 -38.40632 -38.06154 -37.38373 -34.89405 -34.00519 -31.78360 -31.36591 -29.83756 -29.40293 -27.84705 -26.05706 -25.53049 -23.85052 -23.69369 -22.77416 -22.40267 -20.47434 -19.26699 -18.99354 -18.53911 -17.70867 -17.15768 -17.07352 -16.52891 -15.95421 -15.84870 -15.40208 -15.09164 -14.82898 -13.95232 -13.70570 -13.58618 -13.33052 -13.08433 -12.97668 -12.71828 -12.59671 -12.47758 -12.17855 -12.04783 -11.89635 -11.59912 -11.27592 -10.91014 -10.82756 -10.73064 -10.58071 -10.44375 -10.32923 -9.99338 -9.92771 -9.86199 -9.79001 -8.59255 -8.52525 -8.35165 -6.81989 -5.76370 -3.26983 -0.13940 0.59984 1.43620 2.18422 2.46737 2.91343 3.23606 3.25800 3.36752 3.41958 3.43154 3.63192 3.87167 4.18414 4.26009 4.42565 4.45446 4.88559 4.96363 4.97967 5.16580 5.21560 5.29741 5.38673 5.42064 5.43754 5.56879 5.68079 5.76142 5.84362 5.94063 6.09323 6.29516 6.32545 6.46856 6.63112 6.80174 6.83119 6.84040 7.36057 7.65814 7.72836 7.78792 8.17408 8.24955 8.35065 9.17735 9.79182 10.28492 11.27330 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028360 B = 0.002581 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.081557 B =10846.632192 C =11370.802072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.585 5.585 3 C -0.264 4.264 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.903 5.903 7 Si 0.908 3.092 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.080 0.920 13 C -0.154 4.154 14 C 0.095 3.905 15 N -0.604 5.604 16 C 0.571 3.429 17 O -0.509 6.509 18 C -0.069 4.069 19 C -0.053 4.053 20 C -0.139 4.139 21 C 0.082 3.918 22 N -0.406 5.406 23 C 0.312 3.688 24 O -0.427 6.427 25 N -0.237 5.237 26 N -0.244 5.244 27 C 0.233 3.767 28 C 0.087 3.913 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.001 0.999 32 H 0.255 0.745 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.404 0.596 41 H 0.077 0.923 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.091 -24.825 -7.379 26.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.394 4.394 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.547 5.547 7 Si 0.738 3.262 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.194 4.194 14 C -0.028 4.028 15 N -0.338 5.338 16 C 0.357 3.643 17 O -0.384 6.384 18 C -0.077 4.077 19 C -0.077 4.077 20 C -0.161 4.161 21 C -0.040 4.040 22 N -0.099 5.099 23 C 0.013 3.987 24 O -0.226 6.226 25 N -0.087 5.087 26 N -0.090 5.090 27 C -0.019 4.019 28 C -0.037 4.037 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.179 0.821 38 H 0.181 0.819 39 H 0.189 0.811 40 H 0.261 0.739 41 H 0.095 0.905 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.141 -24.118 -5.983 25.375 hybrid contribution 1.575 -0.111 -0.684 1.720 sum 6.716 -24.228 -6.667 26.011 Atomic orbital electron populations 1.20835 0.82307 0.95572 0.99755 1.43908 1.01949 0.99831 1.84840 1.19158 0.99215 0.85527 1.35464 0.91242 1.25132 0.97528 0.98822 0.97791 1.70050 1.17466 1.27784 1.39408 0.86291 0.78662 0.83504 0.77746 1.20996 1.21597 1.20850 1.21374 0.96440 0.85987 0.89927 0.90186 1.23417 1.03081 0.92827 1.00069 1.22578 0.99529 0.99698 0.80986 1.48414 1.67170 1.07797 1.10466 1.17102 0.79006 0.82526 0.85633 1.90900 1.45483 1.84879 1.17125 1.20192 0.94937 0.93053 0.99485 1.22050 0.96589 0.96903 0.92207 1.20827 0.99992 0.92611 1.02645 1.21726 0.88261 1.01951 0.92055 1.44069 1.21787 1.12673 1.31384 1.21782 0.89678 0.88243 0.99039 1.85019 1.69058 1.09043 1.59470 1.74725 1.21752 0.97679 1.14521 1.75009 1.05656 1.11468 1.16837 1.22618 0.98571 0.83982 0.96732 1.23043 1.02837 0.77777 0.99995 0.94870 0.93668 0.98044 0.93466 0.90237 0.90233 0.91311 0.91230 0.82116 0.81852 0.81061 0.73874 0.90457 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.72 59.85 0.46 4.31 16 2 N -0.59 -13.88 2.93 -171.39 -0.50 -14.39 16 3 C -0.26 -6.92 9.61 -15.06 -0.14 -7.06 16 4 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 5 C 0.01 0.18 5.18 -17.43 -0.09 0.09 16 6 N -0.90 -25.97 10.57 55.49 0.59 -25.39 16 7 Si 0.91 21.29 29.56 -169.99 -5.03 16.26 16 8 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 C 0.17 3.22 3.44 -66.10 -0.23 2.99 16 12 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 13 C -0.15 -2.23 6.60 -24.47 -0.16 -2.39 16 14 C 0.10 1.09 5.21 -2.42 -0.01 1.08 16 15 N -0.60 -9.44 3.32 -171.74 -0.57 -10.01 16 16 C 0.57 9.68 7.54 -12.62 -0.10 9.58 16 17 O -0.51 -10.96 17.24 5.24 0.09 -10.87 16 18 C -0.07 -0.91 5.60 -102.69 -0.58 -1.48 16 19 C -0.05 -0.42 8.27 -38.72 -0.32 -0.74 16 20 C -0.14 -0.68 9.91 -40.09 -0.40 -1.07 16 21 C 0.08 0.50 10.94 -16.73 -0.18 0.31 16 22 N -0.41 -4.36 2.97 -62.51 -0.19 -4.55 16 23 C 0.31 3.64 9.41 -88.65 -0.83 2.81 16 24 O -0.43 -3.24 13.65 -18.81 -0.26 -3.50 16 25 N -0.24 -3.75 12.20 29.70 0.36 -3.39 16 26 N -0.24 -4.36 12.23 32.37 0.40 -3.97 16 27 C 0.23 3.42 7.79 -153.90 -1.20 2.22 16 28 C 0.09 1.64 6.51 -3.06 -0.02 1.62 16 29 H 0.03 0.89 7.26 -51.93 -0.38 0.51 16 30 H 0.04 1.17 7.31 -51.93 -0.38 0.79 16 31 H 0.00 0.02 6.12 -51.93 -0.32 -0.29 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.08 1.28 6.14 -51.93 -0.32 0.96 16 34 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.07 0.58 6.94 -51.93 -0.36 0.22 16 36 H 0.07 0.69 7.22 -51.93 -0.37 0.31 16 37 H 0.16 0.92 5.71 -52.49 -0.30 0.62 16 38 H 0.16 0.14 8.06 -52.49 -0.42 -0.29 16 39 H 0.17 0.37 8.06 -52.49 -0.42 -0.06 16 40 H 0.40 0.77 9.06 45.56 0.41 1.19 16 41 H 0.08 1.72 7.06 -51.93 -0.37 1.36 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -37.48 349.03 -7.68 -45.16 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -4.03 Total: -2.90 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: -3.80 Total: 12.27 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: 0.09 Total: -61.68 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.17 Total: -14.36 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.48 -7.68 -45.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972718928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.693 kcal (2) G-P(sol) polarization free energy of solvation -37.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds