Wall clock time and date at job start Sat Apr 11 2020 02:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46503 * 109.46773 * 2 1 4 4 C 1.36937 * 119.99977 * 275.30871 * 3 2 1 5 5 H 1.08000 * 119.99965 * 37.57893 * 4 3 2 6 6 C 1.38814 * 119.99800 * 217.58082 * 4 3 2 7 7 N 1.31623 * 120.00211 * 21.41983 * 6 4 3 8 8 Si 1.86801 * 119.99895 * 201.42263 * 6 4 3 9 9 H 1.48497 * 109.47103 * 59.99956 * 8 6 4 10 10 H 1.48502 * 109.46978 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47227 * 299.99873 * 8 6 4 12 12 C 1.46502 * 119.99700 * 95.30499 * 3 2 1 13 13 C 1.53003 * 109.47371 * 269.99666 * 12 3 2 14 14 N 1.46498 * 109.46857 * 180.02562 * 13 12 3 15 15 C 1.34773 * 119.99767 * 180.02562 * 14 13 12 16 16 O 1.21554 * 120.00065 * 0.02562 * 15 14 13 17 17 C 1.47888 * 120.00166 * 180.02562 * 15 14 13 18 18 C 1.38815 * 119.32485 * 179.97438 * 17 15 14 19 19 C 1.39856 * 118.37203 * 179.76397 * 18 17 15 20 20 C 1.41396 * 122.96210 * 179.70732 * 19 18 17 21 21 O 1.35224 * 120.98873 * 0.54768 * 20 19 18 22 22 N 1.32491 * 118.01595 * 180.27039 * 20 19 18 23 23 C 1.32354 * 121.49068 * 0.25618 * 22 20 19 24 24 N 1.31306 * 123.09304 * 0.02562 * 23 22 20 25 25 C 1.33699 * 120.36448 * 359.97438 * 24 23 22 26 26 C 1.40609 * 122.60994 * 180.02562 * 25 24 23 27 27 N 1.30912 * 120.15808 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.47244 * 299.99866 * 1 2 3 29 29 H 1.09004 * 109.47025 * 60.00368 * 1 2 3 30 30 H 1.09000 * 109.46790 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47244 * 240.00134 * 2 1 3 32 32 H 1.08999 * 109.46592 * 119.99721 * 2 1 3 33 33 H 0.96998 * 120.00275 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46754 * 150.00027 * 12 3 2 35 35 H 1.09000 * 109.47279 * 30.00276 * 12 3 2 36 36 H 1.08998 * 109.46645 * 60.00774 * 13 12 3 37 37 H 1.08995 * 109.47142 * 300.00134 * 13 12 3 38 38 H 0.97001 * 120.00242 * 0.02562 * 14 13 12 39 39 H 1.07998 * 120.81170 * 0.04465 * 18 17 15 40 40 H 0.96699 * 114.00231 * 269.72122 * 21 20 19 41 41 H 1.07996 * 118.45498 * 180.02562 * 23 22 20 42 42 H 1.08009 * 119.92704 * 359.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1431 2.0634 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3026 2.7983 -0.6489 8 14 3.0993 4.2795 -2.6585 9 1 1.9627 5.1785 -2.3345 10 1 4.3617 5.0615 -2.6660 11 1 2.8845 3.6726 -3.9966 12 6 2.3730 2.0327 1.2633 13 6 1.1423 2.7383 1.8365 14 7 1.4973 3.3903 3.0995 15 6 0.5647 4.0770 3.7888 16 8 -0.5710 4.1550 3.3627 17 6 0.9231 4.7356 5.0635 18 6 -0.0484 5.4397 5.7616 19 6 0.3110 6.0505 6.9672 20 6 -0.5981 6.7956 7.7532 21 8 -1.8869 6.9460 7.3725 22 7 -0.1508 7.3373 8.8765 23 6 1.1084 7.1960 9.2588 24 7 1.9963 6.5205 8.5664 25 6 1.6515 5.9326 7.4161 26 6 2.5632 5.1979 6.6376 27 7 2.1734 4.6413 5.5186 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0488 3.4033 -0.7828 34 1 3.1615 2.7642 1.0860 35 1 2.7253 1.2834 1.9722 36 1 0.3540 2.0068 2.0139 37 1 0.7901 3.4877 1.1277 38 1 2.4035 3.3277 3.4397 39 1 -1.0583 5.5102 5.3852 40 1 -2.0459 7.7245 6.8214 41 1 1.4203 7.6581 10.1837 42 1 3.5875 5.0924 6.9635 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663447585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:48:37 Heat of formation + Delta-G solvation = 29.612918 kcal Electronic energy + Delta-G solvation = -27241.946914 eV Core-core repulsion = 23223.693001 eV Total energy + Delta-G solvation = -4018.253913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.20672 -39.96313 -38.65198 -38.09603 -36.33342 -34.26355 -33.86769 -32.99629 -31.89613 -31.12710 -29.60116 -27.69619 -25.97024 -25.72644 -24.21875 -23.28034 -22.27504 -21.08059 -20.34743 -20.00349 -19.03844 -18.73224 -17.62642 -16.64353 -16.42526 -16.10099 -15.59625 -15.28978 -15.15847 -14.89492 -14.79982 -14.68281 -14.24906 -13.97197 -13.69227 -13.42970 -13.34640 -12.75938 -12.63016 -12.39464 -12.07394 -11.54385 -11.41723 -11.37334 -11.13245 -10.77024 -10.73310 -10.66027 -10.64072 -10.54479 -10.16976 -10.03756 -9.90198 -9.78689 -9.59713 -8.99534 -8.59793 -8.46934 -6.63898 -5.84615 -3.43586 -0.62540 -0.10051 1.03782 2.12317 2.59650 3.06570 3.19426 3.35440 3.40778 3.41931 3.44360 3.55940 3.61902 3.81228 4.06152 4.18885 4.45279 4.58690 4.63815 4.94427 5.21940 5.24198 5.27795 5.53842 5.54718 5.77129 5.97318 6.08071 6.14111 6.26126 6.37254 6.38850 6.49171 6.67250 6.68625 6.77178 6.90577 6.97920 7.15243 7.18637 7.42494 7.53325 7.79083 7.84850 8.38854 8.47395 9.13248 9.75215 10.33361 11.15538 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016846 B = 0.002559 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.735781 B =10939.834076 C =11360.941050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.263 4.263 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.137 3.863 13 C 0.094 3.906 14 N -0.693 5.693 15 C 0.561 3.439 16 O -0.539 6.539 17 C 0.064 3.936 18 C -0.050 4.050 19 C -0.161 4.161 20 C 0.422 3.578 21 O -0.464 6.464 22 N -0.537 5.537 23 C 0.327 3.673 24 N -0.494 5.494 25 C 0.128 3.872 26 C 0.159 3.841 27 N -0.427 5.427 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.256 0.744 34 H 0.100 0.900 35 H 0.030 0.970 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.409 0.591 39 H 0.165 0.835 40 H 0.418 0.582 41 H 0.208 0.792 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.315 8.053 18.996 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.392 4.392 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.010 3.990 13 C -0.031 4.031 14 N -0.343 5.343 15 C 0.344 3.656 16 O -0.417 6.417 17 C -0.063 4.063 18 C -0.074 4.074 19 C -0.172 4.172 20 C 0.220 3.780 21 O -0.273 6.273 22 N -0.263 5.263 23 C 0.039 3.961 24 N -0.210 5.210 25 C -0.003 4.003 26 C -0.016 4.016 27 N -0.138 5.138 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.117 0.883 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.244 0.756 39 H 0.183 0.817 40 H 0.281 0.719 41 H 0.224 0.776 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.163 7.498 19.088 21.148 hybrid contribution -0.595 1.340 -0.840 1.690 sum -5.759 8.838 18.248 21.077 Atomic orbital electron populations 1.22393 0.99926 0.99097 1.01376 1.20886 0.91750 0.86966 0.98940 1.43607 1.76056 1.08266 1.02045 1.18973 1.04818 1.21448 0.93991 0.92101 1.25193 0.94152 1.01192 0.98117 1.69983 1.03128 1.37263 1.42421 0.86467 0.76963 0.82323 0.81641 1.20815 1.21570 1.20609 1.21061 0.94434 0.97067 0.86465 1.22608 1.01463 0.96664 0.82340 1.46025 1.13520 1.50917 1.23792 1.17681 0.85494 0.79588 0.82818 1.90798 1.20036 1.61841 1.68988 1.21349 0.89248 0.98788 0.96909 1.22087 1.01787 0.92244 0.91255 1.19738 0.95602 1.03760 0.98063 1.19561 0.83760 0.87459 0.87224 1.84617 1.19763 1.50897 1.72021 1.68049 1.18233 1.23646 1.16325 1.24940 0.82696 0.90415 0.98084 1.68716 1.37088 1.09625 1.05575 1.20127 0.91602 0.95849 0.92742 1.23113 0.99738 0.90830 0.87952 1.67481 1.17057 1.16432 1.12824 0.93686 0.93098 0.94444 0.93540 0.94698 0.93412 0.88277 0.95122 0.92617 0.91380 0.75575 0.81749 0.71929 0.77565 0.79565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 10.21 37.16 0.38 -2.71 16 2 C 0.14 2.92 6.44 -4.04 -0.03 2.90 16 3 N -0.58 -13.95 2.43 -173.23 -0.42 -14.38 16 4 C -0.26 -6.99 9.45 -15.06 -0.14 -7.13 16 5 H 0.06 1.63 7.92 -52.49 -0.42 1.21 16 6 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -24.57 11.47 55.49 0.64 -23.93 16 8 Si 0.90 21.24 29.60 -169.99 -5.03 16.20 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.14 3.04 5.45 -4.04 -0.02 3.02 16 13 C 0.09 1.90 6.00 -4.04 -0.02 1.87 16 14 N -0.69 -11.99 5.54 -61.24 -0.34 -12.33 16 15 C 0.56 9.51 7.80 -12.31 -0.10 9.42 16 16 O -0.54 -10.55 16.28 5.32 0.09 -10.46 16 17 C 0.06 0.87 6.74 -83.02 -0.56 0.31 16 18 C -0.05 -0.59 9.24 -38.76 -0.36 -0.94 16 19 C -0.16 -1.69 5.76 -106.71 -0.61 -2.30 16 20 C 0.42 3.91 7.91 -16.07 -0.13 3.79 16 21 O -0.46 -3.40 13.04 -17.37 -0.23 -3.63 16 22 N -0.54 -4.92 10.42 -14.23 -0.15 -5.06 16 23 C 0.33 2.56 12.21 -92.09 -1.12 1.43 16 24 N -0.49 -4.63 10.46 -12.54 -0.13 -4.76 16 25 C 0.13 1.33 6.64 -84.78 -0.56 0.76 16 26 C 0.16 1.61 11.26 -17.05 -0.19 1.42 16 27 N -0.43 -5.33 9.43 -9.47 -0.09 -5.41 16 28 H 0.04 0.83 6.64 -51.93 -0.34 0.48 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.10 2.47 5.52 -51.93 -0.29 2.18 16 35 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 36 H 0.06 1.13 6.64 -51.93 -0.34 0.79 16 37 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 38 H 0.41 6.46 7.77 -40.82 -0.32 6.14 16 39 H 0.17 1.79 7.38 -52.49 -0.39 1.41 16 40 H 0.42 0.90 9.06 45.56 0.41 1.31 16 41 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.19 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -32.94 363.62 -7.91 -40.85 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.17 Total: 5.32 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -3.56 Total: 12.12 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.49 Total: -65.88 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.14 Total: -14.09 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.94 -7.91 -40.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663447585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.459 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds