Wall clock time and date at job start Sat Apr 11 2020 02:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47664 * 2 1 4 4 H 1.08994 * 109.47070 * 54.99723 * 3 2 1 5 5 N 1.46498 * 109.46900 * 295.00354 * 3 2 1 6 6 C 1.34777 * 120.00147 * 84.99873 * 5 3 2 7 7 O 1.21603 * 120.00160 * 0.02562 * 6 5 3 8 8 C 1.47429 * 120.00013 * 179.97438 * 6 5 3 9 9 C 1.41293 * 126.41485 * 0.02562 * 8 6 5 10 10 N 1.30448 * 108.02361 * 179.71995 * 9 8 6 11 11 N 1.39944 * 108.89724 * 0.40720 * 10 9 8 12 12 C 1.46491 * 125.75406 * 179.85047 * 11 10 9 13 13 C 1.50702 * 109.46957 * 269.68786 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.34263 * 108.48668 * 359.58371 * 11 10 9 22 22 C 1.50694 * 126.28514 * 180.26484 * 21 11 10 23 23 C 1.52996 * 109.47540 * 175.00430 * 3 2 1 24 24 H 1.08999 * 109.47416 * 175.00489 * 23 3 2 25 25 O 1.42898 * 109.47475 * 54.99710 * 23 3 2 26 26 C 1.53008 * 109.46962 * 294.99896 * 23 3 2 27 27 F 1.39906 * 109.46956 * 64.99902 * 26 23 3 28 28 F 1.39892 * 109.47319 * 184.99940 * 26 23 3 29 29 H 1.08996 * 109.46735 * 300.00368 * 1 2 3 30 30 H 1.09001 * 109.46879 * 59.99342 * 1 2 3 31 31 H 1.08996 * 109.47525 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46904 * 239.99896 * 2 1 3 33 33 H 1.09001 * 109.46879 * 120.00658 * 2 1 3 34 34 H 0.97008 * 120.00191 * 264.99173 * 5 3 2 35 35 H 1.07999 * 125.98923 * 359.95357 * 9 8 6 36 36 H 1.09004 * 109.47166 * 149.69052 * 12 11 10 37 37 H 1.08994 * 109.47507 * 29.68759 * 12 11 10 38 38 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.47548 * 90.00002 * 22 21 11 40 40 H 1.09005 * 109.47060 * 210.00231 * 22 21 11 41 41 H 1.08998 * 109.47841 * 329.99761 * 22 21 11 42 42 H 0.96705 * 113.99692 * 300.00577 * 25 23 3 43 43 H 1.09001 * 109.47025 * 305.00629 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 7 1.6525 2.0974 -1.2518 6 6 0.4353 2.6644 -1.3669 7 8 -0.3412 2.6327 -0.4315 8 6 0.0455 3.3240 -2.6264 9 6 0.8357 3.4402 -3.7919 10 7 0.1399 4.0826 -4.6890 11 7 -1.1070 4.4116 -4.1454 12 6 -2.1762 5.1385 -4.8340 13 6 -2.0162 6.6171 -4.5901 14 1 -1.1995 6.9790 -3.9831 15 6 -2.9089 7.5082 -5.1470 16 7 -3.9032 7.0675 -5.8864 17 14 -2.7061 9.3414 -4.8509 18 1 -1.3869 9.7837 -5.3699 19 1 -3.7872 10.0787 -5.5530 20 1 -2.7834 9.6192 -3.3942 21 6 -1.1602 3.9433 -2.8881 22 6 -2.3227 4.0702 -1.9377 23 6 3.5649 1.4442 0.1256 24 1 3.9357 2.4653 0.0366 25 8 4.1294 0.6402 -0.9122 26 6 3.9651 0.8734 1.4876 27 9 3.5895 -0.4725 1.5578 28 9 5.3506 0.9798 1.6491 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2721 2.1231 -1.9978 35 1 1.8386 3.0602 -3.9192 36 1 -3.1430 4.8099 -4.4528 37 1 -2.1206 4.9388 -5.9041 38 1 -4.5314 7.6945 -6.2779 39 1 -2.9839 3.2117 -2.0557 40 1 -1.9522 4.1053 -0.9131 41 1 -2.8729 4.9853 -2.1565 42 1 3.8426 -0.2831 -0.8944 43 1 3.4632 1.4322 2.2775 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897884792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:52:04 Heat of formation + Delta-G solvation = -127.395053 kcal Electronic energy + Delta-G solvation = -28983.394614 eV Core-core repulsion = 24507.643138 eV Total energy + Delta-G solvation = -4475.751476 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.149 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -49.52505 -47.51444 -40.87407 -39.66841 -37.80647 -34.92279 -33.94534 -32.55513 -31.95172 -31.05076 -30.57216 -27.58792 -26.74112 -25.78671 -23.48561 -23.19183 -22.23542 -20.96471 -19.93710 -19.07850 -18.36234 -18.09549 -17.70100 -17.22265 -16.79323 -15.94904 -15.80686 -15.56051 -15.03622 -14.95102 -14.59417 -14.43074 -14.21067 -13.96674 -13.92391 -13.63430 -13.29024 -13.05789 -12.75262 -12.65496 -12.57907 -12.47744 -12.16742 -12.07764 -11.81506 -11.56667 -11.48077 -11.22594 -11.14860 -10.90004 -10.83884 -10.49162 -10.38830 -10.19138 -9.97853 -9.43159 -9.00995 -8.73039 -8.61327 -7.95351 -6.35780 -4.44051 2.14047 2.75308 2.81115 3.18332 3.22593 3.23714 3.32829 3.52517 3.66579 3.77457 3.81075 3.93384 4.22309 4.22596 4.47330 4.66689 4.86039 4.97817 5.07144 5.13728 5.23025 5.33402 5.44067 5.60329 5.73022 5.74558 5.89865 5.92345 6.05212 6.07027 6.38277 6.44060 6.53298 6.56945 6.76283 6.87422 6.94502 7.13725 7.53386 7.66848 7.74774 7.76692 8.35206 8.54204 8.61617 9.23060 10.72341 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.023341 B = 0.002509 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.306812 B =11157.597171 C =11452.935945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.163 4.163 3 C 0.120 3.880 4 H 0.101 0.899 5 N -0.725 5.725 6 C 0.607 3.393 7 O -0.550 6.550 8 C -0.334 4.334 9 C 0.058 3.942 10 N -0.295 5.295 11 N -0.314 5.314 12 C 0.251 3.749 13 C -0.542 4.542 14 H 0.065 0.935 15 C 0.068 3.932 16 N -0.889 5.889 17 Si 0.908 3.092 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.167 3.833 22 C -0.097 4.097 23 C 0.054 3.946 24 H 0.135 0.865 25 O -0.541 6.541 26 C 0.235 3.765 27 F -0.195 7.195 28 F -0.196 7.196 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.092 0.908 34 H 0.403 0.597 35 H 0.175 0.825 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.270 0.730 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.383 0.617 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.159 -13.669 13.809 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.201 4.201 3 C 0.014 3.986 4 H 0.119 0.881 5 N -0.377 5.377 6 C 0.398 3.602 7 O -0.429 6.429 8 C -0.350 4.350 9 C -0.129 4.129 10 N -0.115 5.115 11 N -0.091 5.091 12 C 0.134 3.866 13 C -0.581 4.581 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.735 3.265 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.029 3.971 22 C -0.156 4.156 23 C -0.007 4.007 24 H 0.153 0.847 25 O -0.347 6.347 26 C 0.180 3.820 27 F -0.177 7.177 28 F -0.177 7.177 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.238 0.762 35 H 0.192 0.808 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.233 0.767 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.609 -12.540 12.875 21.396 hybrid contribution 0.272 0.125 0.550 0.626 sum 11.881 -12.415 13.424 21.806 Atomic orbital electron populations 1.21740 0.93978 1.00535 1.03569 1.22449 0.98550 0.95479 1.03630 1.21439 0.91964 0.95111 0.90047 0.88082 1.45600 1.17432 1.59069 1.15641 1.17250 0.80419 0.76151 0.86381 1.90700 1.51321 1.60386 1.40472 1.19643 0.97624 1.20395 0.97296 1.23745 0.99445 0.98582 0.91147 1.77155 0.92555 1.18825 1.22977 1.49389 1.12371 1.38316 1.08975 1.19845 0.81580 0.91162 0.93995 1.21218 1.13515 0.89704 1.33616 0.91696 1.24926 0.94550 0.99882 0.94261 1.69906 1.14770 1.35770 1.32211 0.86376 0.78066 0.83357 0.78700 1.19882 1.20856 1.19828 1.21473 0.96101 0.92425 0.87090 1.20610 0.93872 1.03160 0.97914 1.23417 0.93990 0.97723 0.85545 0.84719 1.86638 1.71709 1.25579 1.50794 1.22659 0.77951 0.80121 1.01252 1.92870 1.90251 1.37060 1.97489 1.93022 1.32027 1.95909 1.96735 0.92145 0.91895 0.93720 0.91678 0.88946 0.76164 0.80771 0.92578 0.92509 0.92023 0.90555 0.88597 0.89938 0.76711 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.51 37.16 0.32 -1.23 16 2 C -0.16 -1.36 4.66 -26.73 -0.12 -1.48 16 3 C 0.12 1.02 2.13 -67.94 -0.14 0.87 16 4 H 0.10 0.92 7.58 -51.93 -0.39 0.52 16 5 N -0.72 -7.80 5.00 -54.89 -0.27 -8.07 16 6 C 0.61 9.01 6.38 -12.52 -0.08 8.93 16 7 O -0.55 -9.08 11.97 5.27 0.06 -9.01 16 8 C -0.33 -5.80 6.13 -105.07 -0.64 -6.44 16 9 C 0.06 0.98 11.50 -16.98 -0.20 0.79 16 10 N -0.30 -6.26 12.50 30.86 0.39 -5.87 16 11 N -0.31 -6.96 3.56 -57.78 -0.21 -7.17 16 12 C 0.25 6.18 5.78 -5.20 -0.03 6.15 16 13 C -0.54 -14.44 9.39 -34.44 -0.32 -14.77 16 14 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 15 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -24.39 13.29 55.43 0.74 -23.66 16 17 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 C 0.17 3.28 7.01 -81.60 -0.57 2.71 16 22 C -0.10 -1.69 9.34 36.00 0.34 -1.36 16 23 C 0.05 0.37 3.17 -26.73 -0.08 0.28 16 24 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 25 O -0.54 -4.19 12.96 -35.23 -0.46 -4.64 16 26 C 0.23 1.45 4.95 37.16 0.18 1.63 16 27 F -0.20 -1.39 13.55 2.25 0.03 -1.36 16 28 F -0.20 -1.68 17.33 2.25 0.04 -1.64 16 29 H 0.06 0.71 7.84 -51.93 -0.41 0.30 16 30 H 0.06 0.86 5.64 -51.93 -0.29 0.56 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.51 7.00 -51.93 -0.36 0.14 16 33 H 0.09 0.67 5.10 -51.93 -0.27 0.41 16 34 H 0.40 3.86 7.34 -40.82 -0.30 3.56 16 35 H 0.18 2.16 7.50 -52.49 -0.39 1.77 16 36 H 0.06 1.37 7.62 -51.93 -0.40 0.97 16 37 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.10 1.61 6.50 -51.93 -0.34 1.27 16 41 H 0.08 1.51 7.70 -51.93 -0.40 1.11 16 42 H 0.38 2.22 6.82 45.56 0.31 2.53 16 43 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -30.94 358.91 -5.65 -36.59 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.90 Total: 6.06 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.46 Total: -2.20 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.64 Total: -44.77 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.39 Total: -13.66 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.07 Total: -3.01 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.94 -5.65 -36.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897884792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.807 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds