Wall clock time and date at job start Sat Apr 11 2020 02:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47080 * 2 1 4 4 C 1.47203 * 109.46795 * 119.99892 * 2 1 3 5 5 N 2.60803 * 109.46814 * 119.99951 * 2 1 3 6 6 C 1.50695 * 109.46970 * 239.99327 * 2 1 3 7 7 O 1.21285 * 120.00545 * 274.97333 * 6 2 1 8 8 N 1.34785 * 119.99583 * 94.97291 * 6 2 1 9 9 C 1.47026 * 125.64421 * 174.95553 * 8 6 2 10 10 C 1.54324 * 107.26630 * 178.98780 * 9 8 6 11 11 H 1.08996 * 110.72187 * 96.16870 * 10 9 8 12 12 C 1.50703 * 110.71788 * 219.44212 * 10 9 8 13 13 C 1.38271 * 119.98373 * 53.24892 * 12 10 9 14 14 C 1.38225 * 120.04611 * 179.72648 * 13 12 10 15 15 C 1.38227 * 120.02681 * 0.55067 * 14 13 12 16 16 C 1.38436 * 119.97282 * 359.72064 * 15 14 13 17 17 F 1.35096 * 120.02302 * 180.02562 * 16 15 14 18 18 C 1.38170 * 119.98852 * 233.51878 * 12 10 9 19 19 C 1.55166 * 102.94339 * 337.80138 * 10 9 8 20 20 H 1.08999 * 111.00487 * 277.39841 * 19 10 9 21 21 N 1.46501 * 111.00102 * 153.57790 * 19 10 9 22 22 C 1.36931 * 119.99546 * 154.72699 * 21 19 10 23 23 H 1.08003 * 120.00126 * 0.27665 * 22 21 19 24 24 C 1.38815 * 120.00119 * 180.27459 * 22 21 19 25 25 N 1.31616 * 119.99612 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00219 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47302 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46780 * 120.00145 * 26 24 22 29 29 H 1.48493 * 109.47215 * 240.00180 * 26 24 22 30 30 C 1.47416 * 125.64837 * 355.00428 * 8 6 2 31 31 H 1.08997 * 109.47190 * 184.99325 * 1 2 3 32 32 H 1.09005 * 109.47142 * 304.99380 * 1 2 3 33 33 H 1.08998 * 109.46959 * 64.98952 * 1 2 3 34 34 H 1.08997 * 109.88360 * 59.56863 * 9 8 6 35 35 H 1.09001 * 110.01099 * 298.47017 * 9 8 6 36 36 H 1.07991 * 119.97827 * 359.97438 * 13 12 10 37 37 H 1.08007 * 119.98912 * 180.26832 * 14 13 12 38 38 H 1.07997 * 120.01145 * 179.70645 * 15 14 13 39 39 H 1.08002 * 120.01075 * 0.02562 * 18 12 10 40 40 H 0.96992 * 120.00274 * 335.00237 * 21 19 10 41 41 H 0.97004 * 119.99820 * 180.02562 * 25 24 22 42 42 H 1.09005 * 110.36586 * 85.24732 * 30 8 6 43 43 H 1.09003 * 110.36851 * 322.92360 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 1.2019 5 7 2.3992 -1.2294 2.1295 6 6 2.0323 -0.7105 -1.2303 7 8 2.1486 -1.9178 -1.2285 8 7 2.3523 -0.0043 -2.3329 9 6 2.9493 -0.5538 -3.5590 10 6 3.1130 0.6156 -4.5526 11 1 4.1229 1.0228 -4.5060 12 6 2.7783 0.1749 -5.9544 13 6 1.5671 -0.4391 -6.2151 14 6 1.2564 -0.8387 -7.5013 15 6 2.1611 -0.6351 -8.5264 16 6 3.3764 -0.0256 -8.2655 17 9 4.2611 0.1743 -9.2666 18 6 3.6841 0.3796 -6.9775 19 6 2.0785 1.6532 -4.0417 20 1 1.0796 1.4244 -4.4130 21 7 2.4741 3.0146 -4.4109 22 6 1.5246 3.9933 -4.5354 23 1 0.4847 3.7627 -4.3569 24 6 1.8986 5.2820 -4.8908 25 7 3.1660 5.5632 -5.1077 26 14 0.6033 6.6171 -5.0613 27 1 -0.7361 6.0480 -4.7656 28 1 0.8958 7.7154 -4.1056 29 1 0.6204 7.1494 -6.4474 30 6 2.1626 1.4470 -2.5087 31 1 -0.3633 -1.0237 0.0894 32 1 -0.3634 0.5894 0.8419 33 1 -0.3633 0.4345 -0.9313 34 1 2.2917 -1.3121 -3.9839 35 1 3.9231 -0.9902 -3.3365 36 1 0.8617 -0.6029 -5.4140 37 1 0.3083 -1.3143 -7.7047 38 1 1.9201 -0.9518 -9.5304 39 1 4.6320 0.8548 -6.7726 40 1 3.4080 3.2217 -4.5712 41 1 3.4274 6.4638 -5.3558 42 1 3.0121 1.9930 -2.0985 43 1 1.2371 1.7692 -2.0313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079175182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:49:22 Heat of formation + Delta-G solvation = -12.370713 kcal Electronic energy + Delta-G solvation = -27942.686056 eV Core-core repulsion = 23902.691634 eV Total energy + Delta-G solvation = -4039.994422 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.74511 -40.51490 -39.23462 -37.49935 -36.55016 -34.29026 -33.57745 -32.48108 -31.09783 -30.48189 -28.62793 -27.65463 -25.62877 -24.15067 -23.56400 -22.72634 -21.56306 -20.26956 -19.83618 -17.81463 -17.55188 -17.36495 -16.85079 -16.32825 -16.03469 -15.70058 -15.44360 -15.39105 -14.92405 -14.41216 -14.12008 -13.79881 -13.58868 -13.48102 -13.26584 -13.22600 -13.09420 -12.91491 -12.75684 -12.58431 -12.33226 -12.22269 -11.95114 -11.87590 -11.75017 -11.64901 -11.39744 -11.01383 -10.96085 -10.78652 -10.52667 -10.19976 -10.01602 -9.85990 -9.20867 -8.79181 -8.67400 -8.45361 -7.23095 -5.96878 -3.28701 1.26798 1.34162 2.25023 2.46332 2.66465 3.07933 3.31890 3.37927 3.40721 3.66925 3.72499 4.26663 4.33540 4.45822 4.67436 4.69986 4.77046 4.79527 4.94427 5.02465 5.09230 5.26852 5.33498 5.34621 5.37762 5.43826 5.47200 5.54409 5.60503 5.77336 5.81349 5.88960 5.95150 6.06897 6.10093 6.18714 6.21799 6.26160 6.40710 6.51245 6.69527 7.01084 7.33320 7.47913 7.52599 7.99405 8.19256 9.32300 9.82494 10.16948 11.24632 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.007332 B = 0.004667 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3818.042731 B = 5997.738904 C = 8948.624262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 H 0.136 0.864 4 C 0.225 3.775 5 N -0.419 5.419 6 C 0.538 3.462 7 O -0.538 6.538 8 N -0.607 5.607 9 C 0.121 3.879 10 C -0.079 4.079 11 H 0.097 0.903 12 C -0.023 4.023 13 C -0.124 4.124 14 C -0.090 4.090 15 C -0.163 4.163 16 C 0.098 3.902 17 F -0.144 7.144 18 C -0.139 4.139 19 C 0.186 3.814 20 H 0.075 0.925 21 N -0.706 5.706 22 C -0.252 4.252 23 H 0.074 0.926 24 C -0.003 4.003 25 N -0.926 5.926 26 Si 0.906 3.094 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.291 1.291 30 C 0.062 3.938 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.388 0.612 41 H 0.257 0.743 42 H 0.077 0.923 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 -10.517 0.113 11.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.035 4.035 3 H 0.154 0.846 4 C -0.094 4.094 5 N -0.095 5.095 6 C 0.323 3.677 7 O -0.415 6.415 8 N -0.341 5.341 9 C -0.002 4.002 10 C -0.099 4.099 11 H 0.116 0.884 12 C -0.023 4.023 13 C -0.142 4.142 14 C -0.108 4.108 15 C -0.182 4.182 16 C 0.079 3.921 17 F -0.122 7.122 18 C -0.158 4.158 19 C 0.073 3.927 20 H 0.093 0.907 21 N -0.345 5.345 22 C -0.383 4.383 23 H 0.092 0.908 24 C -0.200 4.200 25 N -0.572 5.572 26 Si 0.737 3.263 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.218 1.218 30 C -0.063 4.063 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.153 0.847 40 H 0.223 0.777 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.477 -11.844 1.506 12.435 hybrid contribution -0.216 1.359 -0.800 1.592 sum -3.693 -10.484 0.706 11.138 Atomic orbital electron populations 1.21738 0.89165 1.04218 1.04632 1.18824 0.99221 1.00052 0.85403 0.84623 1.28194 0.93646 0.93563 0.93970 1.81178 1.08128 1.08305 1.11872 1.19562 0.78141 0.86907 0.83071 1.90751 1.53866 1.13749 1.83122 1.48433 1.61032 1.10520 1.14074 1.21992 0.98644 0.95811 0.83762 1.21634 1.02412 0.95906 0.89936 0.88442 1.19338 0.93338 0.95399 0.94249 1.21037 0.96646 0.99456 0.97060 1.20910 0.98787 0.98920 0.92196 1.21060 0.93493 1.02930 1.00699 1.17664 0.88431 1.00936 0.85048 1.91482 1.67695 1.93233 1.59810 1.21028 1.01532 1.02172 0.91084 1.21362 0.95991 0.85759 0.89626 0.90688 1.42285 1.08048 1.03013 1.81134 1.19234 0.89450 0.88825 1.40770 0.90796 1.24754 0.96113 0.97634 1.01504 1.69655 1.14529 1.20316 1.52713 0.86154 0.80643 0.82087 0.77454 1.20376 1.21718 1.21752 1.23750 1.02156 0.77956 1.02474 0.90957 0.90203 0.89627 0.90730 0.91216 0.85438 0.85299 0.85250 0.84714 0.77739 0.93259 0.90468 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.13 37.16 0.34 -0.72 16 2 C -0.01 -0.10 2.54 -94.56 -0.24 -0.34 16 3 H 0.14 1.04 7.13 -51.93 -0.37 0.67 16 4 C 0.23 2.86 14.15 -20.76 -0.29 2.57 16 5 N -0.42 -6.36 18.54 42.15 0.78 -5.58 16 6 C 0.54 6.89 6.82 -10.98 -0.07 6.82 16 7 O -0.54 -8.84 16.77 5.55 0.09 -8.74 16 8 N -0.61 -7.41 3.33 -170.52 -0.57 -7.97 16 9 C 0.12 1.47 6.34 -3.06 -0.02 1.45 16 10 C -0.08 -1.04 2.82 -89.93 -0.25 -1.29 16 11 H 0.10 1.31 7.82 -51.93 -0.41 0.90 16 12 C -0.02 -0.30 4.95 -104.63 -0.52 -0.82 16 13 C -0.12 -1.51 8.11 -39.57 -0.32 -1.83 16 14 C -0.09 -1.01 10.04 -39.59 -0.40 -1.41 16 15 C -0.16 -1.98 10.03 -39.51 -0.40 -2.38 16 16 C 0.10 1.38 7.30 -39.42 -0.29 1.10 16 17 F -0.14 -2.12 17.27 2.25 0.04 -2.08 16 18 C -0.14 -1.97 9.66 -39.52 -0.38 -2.36 16 19 C 0.19 2.82 3.11 -65.78 -0.20 2.62 16 20 H 0.08 1.17 7.17 -51.93 -0.37 0.80 16 21 N -0.71 -14.43 5.24 -51.34 -0.27 -14.70 16 22 C -0.25 -5.97 9.96 -15.06 -0.15 -6.12 16 23 H 0.07 1.69 7.83 -52.48 -0.41 1.28 16 24 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 25 N -0.93 -25.27 13.06 55.49 0.72 -24.55 16 26 Si 0.91 20.34 29.55 -169.99 -5.02 15.31 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 C 0.06 0.79 5.86 -2.53 -0.01 0.78 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.58 7.98 -51.93 -0.41 0.17 16 34 H 0.07 0.89 6.64 -51.93 -0.34 0.55 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.13 1.38 7.28 -52.49 -0.38 1.00 16 37 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.13 1.83 7.98 -52.49 -0.42 1.41 16 40 H 0.39 8.66 7.76 -40.82 -0.32 8.34 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 0.89 7.51 -51.93 -0.39 0.50 16 LS Contribution 373.48 15.07 5.63 5.63 Total: -1.00 -30.53 373.48 -7.40 -37.93 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.50 Total: 6.85 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -3.31 Total: -2.10 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.67 Total: -52.80 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.53 -7.40 -37.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079175182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.561 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds