Wall clock time and date at job start Sat Apr 11 2020 02:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47187 * 2 1 4 4 C 1.53002 * 109.46919 * 240.00050 * 2 1 3 5 5 N 1.46508 * 109.46826 * 184.99657 * 4 2 1 6 6 C 1.34776 * 119.99521 * 179.97438 * 5 4 2 7 7 O 1.21599 * 120.00491 * 359.97438 * 6 5 4 8 8 C 1.47452 * 119.99682 * 180.02562 * 6 5 4 9 9 C 1.38715 * 120.31370 * 0.02562 * 8 6 5 10 10 C 1.39099 * 120.68909 * 179.97438 * 9 8 6 11 11 F 1.35103 * 119.49237 * 179.97438 * 10 9 8 12 12 C 1.36532 * 121.00588 * 0.02562 * 10 9 8 13 13 C 1.40409 * 120.07400 * 359.97438 * 12 10 9 14 14 C 1.40818 * 121.24178 * 179.97438 * 13 12 10 15 15 C 1.36627 * 118.15300 * 180.02562 * 14 13 12 16 16 C 1.39235 * 119.91073 * 0.02562 * 15 14 13 17 17 N 1.31214 * 121.69830 * 0.02562 * 16 15 14 18 18 C 1.33369 * 121.35838 * 359.72585 * 17 16 15 19 19 N 1.46500 * 109.47424 * 119.99838 * 2 1 3 20 20 C 1.46494 * 119.99818 * 59.99857 * 19 2 1 21 21 C 1.36942 * 120.00179 * 239.99960 * 19 2 1 22 22 H 1.07995 * 119.99498 * 21.90965 * 21 19 2 23 23 C 1.38808 * 119.99980 * 201.90574 * 21 19 2 24 24 N 1.31624 * 119.99798 * 12.76914 * 23 21 19 25 25 Si 1.86797 * 120.00095 * 192.76297 * 23 21 19 26 26 H 1.48506 * 109.46899 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47144 * 120.00157 * 25 23 21 28 28 H 1.48499 * 109.47283 * 240.00460 * 25 23 21 29 29 H 1.09007 * 109.46977 * 300.00135 * 1 2 3 30 30 H 1.08999 * 109.47448 * 60.00058 * 1 2 3 31 31 H 1.08996 * 109.47115 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47068 * 304.99482 * 4 2 1 33 33 H 1.08995 * 109.47095 * 65.00150 * 4 2 1 34 34 H 0.96998 * 119.99949 * 0.02562 * 5 4 2 35 35 H 1.07997 * 119.65306 * 359.95793 * 9 8 6 36 36 H 1.08009 * 119.96084 * 180.02562 * 12 10 9 37 37 H 1.07999 * 120.92017 * 0.05215 * 14 13 12 38 38 H 1.08000 * 120.04174 * 180.02562 * 15 14 13 39 39 H 1.07995 * 119.15124 * 179.97438 * 16 15 14 40 40 H 1.09007 * 109.47354 * 94.31566 * 20 19 2 41 41 H 1.09003 * 109.47360 * 214.31102 * 20 19 2 42 42 H 1.09002 * 109.47551 * 334.31358 * 20 19 2 43 43 H 0.97006 * 119.99369 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1729 -1.4291 -2.1908 7 8 3.5682 -1.8862 -3.1416 8 6 5.6424 -1.5354 -2.1315 9 6 6.3387 -1.0177 -1.0492 10 6 7.7249 -1.1140 -0.9851 11 9 8.3787 -0.6010 0.0801 12 6 8.4348 -1.7183 -1.9825 13 6 7.7677 -2.2551 -3.0952 14 6 8.4754 -2.8831 -4.1382 15 6 7.7627 -3.3829 -5.1913 16 6 6.3757 -3.2623 -5.2106 17 7 5.7210 -2.6754 -4.2366 18 6 6.3567 -2.1710 -3.1783 19 7 2.0184 -0.6906 1.1962 20 6 1.6645 -2.0931 1.4280 21 6 2.8057 -0.0250 2.0975 22 1 2.7852 1.0539 2.1391 23 6 3.6300 -0.7372 2.9578 24 7 3.8498 -2.0180 2.7487 25 14 4.4275 0.1220 4.4121 26 1 4.0233 1.5509 4.4252 27 1 3.9879 -0.5279 5.6729 28 1 5.9047 0.0260 4.2946 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 1.7516 -0.1583 -2.1369 34 1 3.9823 -0.4627 -0.4316 35 1 5.7990 -0.5345 -0.2483 36 1 9.5108 -1.7841 -1.9152 37 1 9.5516 -2.9676 -4.1063 38 1 8.2745 -3.8709 -6.0075 39 1 5.8246 -3.6615 -6.0492 40 1 2.4539 -2.7362 1.0389 41 1 1.5489 -2.2666 2.4979 42 1 0.7273 -2.3202 0.9198 43 1 4.4262 -2.5156 3.3497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282466607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:51:16 Heat of formation + Delta-G solvation = 8.732218 kcal Electronic energy + Delta-G solvation = -28531.632745 eV Core-core repulsion = 24492.553415 eV Total energy + Delta-G solvation = -4039.079330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.92079 -40.95277 -38.94085 -36.82263 -36.51048 -33.65329 -33.51691 -32.10144 -30.51922 -30.00262 -29.23650 -26.07189 -25.95286 -24.62079 -23.54037 -23.27086 -22.65768 -20.05510 -19.34599 -18.57468 -17.74844 -17.39424 -16.93086 -16.12669 -15.70842 -15.69806 -15.30330 -15.12738 -14.87231 -14.61370 -14.36243 -14.13071 -13.69969 -13.40578 -13.20602 -13.11631 -12.79359 -12.59460 -12.35728 -12.16231 -12.06415 -11.63076 -11.61127 -11.35205 -11.08437 -10.82388 -10.70474 -10.59378 -10.40850 -10.27706 -9.87252 -9.79229 -9.74961 -9.03443 -8.84043 -8.61979 -8.42862 -8.20292 -6.84071 -5.78174 -3.25404 0.02099 0.64173 1.66563 2.55790 3.33305 3.42187 3.43093 3.49805 3.65940 4.04844 4.14597 4.23139 4.42592 4.46861 4.57138 4.73192 4.78236 4.99825 5.10963 5.34642 5.35994 5.39699 5.50211 5.61093 5.63985 5.81597 5.86961 5.91574 5.97199 6.06522 6.10295 6.17538 6.34584 6.39255 6.41431 6.66403 6.70231 6.81491 6.91018 7.15225 7.39591 7.71668 7.78251 7.94527 8.22727 8.32547 8.83730 9.17376 9.80694 10.30196 11.24606 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011937 B = 0.004441 C = 0.003440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.997776 B = 6302.680539 C = 8138.663680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.068 0.932 4 C 0.110 3.890 5 N -0.698 5.698 6 C 0.549 3.451 7 O -0.515 6.515 8 C -0.067 4.067 9 C -0.090 4.090 10 C 0.108 3.892 11 F -0.130 7.130 12 C -0.123 4.123 13 C -0.088 4.088 14 C -0.062 4.062 15 C -0.170 4.170 16 C 0.124 3.876 17 N -0.427 5.427 18 C 0.151 3.849 19 N -0.595 5.595 20 C 0.163 3.837 21 C -0.262 4.262 22 H 0.069 0.931 23 C 0.006 3.994 24 N -0.900 5.900 25 Si 0.898 3.102 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.289 1.289 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.411 0.589 35 H 0.157 0.843 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.160 0.840 40 H 0.029 0.971 41 H 0.042 0.958 42 H -0.001 1.001 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.375 -0.219 -12.954 15.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.016 4.016 5 N -0.350 5.350 6 C 0.333 3.667 7 O -0.392 6.392 8 C -0.071 4.071 9 C -0.111 4.111 10 C 0.089 3.911 11 F -0.109 7.109 12 C -0.143 4.143 13 C -0.090 4.090 14 C -0.088 4.088 15 C -0.190 4.190 16 C -0.049 4.049 17 N -0.133 5.133 18 C 0.027 3.973 19 N -0.318 5.318 20 C 0.019 3.981 21 C -0.391 4.391 22 H 0.086 0.914 23 C -0.193 4.193 24 N -0.545 5.545 25 Si 0.728 3.272 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.216 1.216 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.249 0.751 35 H 0.175 0.825 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.177 0.823 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.083 -0.511 -13.390 15.157 hybrid contribution 1.882 0.401 1.631 2.523 sum 8.965 -0.110 -11.759 14.787 Atomic orbital electron populations 1.22165 0.97434 1.01485 1.00653 1.20656 0.92665 0.95870 0.85947 0.91345 1.21947 0.79573 1.01115 0.98980 1.45809 1.08296 1.58121 1.22813 1.17718 0.85835 0.79677 0.83448 1.90801 1.68743 1.46706 1.32927 1.19908 0.94617 0.99173 0.93381 1.21680 0.92735 0.98333 0.98390 1.17184 0.90151 0.98302 0.85473 1.91562 1.80905 1.84589 1.53828 1.20989 1.00796 0.99487 0.93069 1.18483 0.93726 1.00811 0.95973 1.21377 1.00290 0.94877 0.92243 1.21955 0.95935 1.01507 0.99616 1.23177 0.91509 0.93725 0.96473 1.68331 1.38520 1.06736 0.99743 1.18629 0.88973 0.96498 0.93182 1.43967 1.57855 1.09696 1.20288 1.20752 0.94010 0.84421 0.98921 1.19270 1.16789 0.90998 1.12067 0.91359 1.24973 0.98026 0.96074 1.00211 1.70102 1.39423 1.07299 1.37626 0.86298 0.78944 0.78939 0.83057 1.20359 1.21686 1.21632 0.92443 0.93530 0.92925 0.92249 0.92691 0.75081 0.82510 0.83782 0.84179 0.84424 0.82284 0.95313 0.93940 0.98288 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.18 37.16 0.34 -2.26 16 2 C 0.16 2.99 2.87 -67.93 -0.19 2.80 16 3 H 0.07 1.28 7.86 -51.93 -0.41 0.87 16 4 C 0.11 2.07 4.97 -4.04 -0.02 2.05 16 5 N -0.70 -13.68 5.34 -61.37 -0.33 -14.01 16 6 C 0.55 11.03 7.76 -12.51 -0.10 10.93 16 7 O -0.52 -11.51 15.18 5.28 0.08 -11.43 16 8 C -0.07 -1.20 5.90 -104.62 -0.62 -1.81 16 9 C -0.09 -1.49 9.49 -39.09 -0.37 -1.86 16 10 C 0.11 1.60 7.22 -39.88 -0.29 1.31 16 11 F -0.13 -2.00 17.24 2.25 0.04 -1.96 16 12 C -0.12 -1.53 9.71 -39.38 -0.38 -1.91 16 13 C -0.09 -1.16 5.74 -106.83 -0.61 -1.77 16 14 C -0.06 -0.61 9.89 -39.19 -0.39 -1.00 16 15 C -0.17 -1.57 10.03 -39.79 -0.40 -1.97 16 16 C 0.12 1.49 11.15 -17.44 -0.19 1.30 16 17 N -0.43 -7.17 8.43 -10.76 -0.09 -7.26 16 18 C 0.15 2.50 6.61 -84.57 -0.56 1.95 16 19 N -0.59 -13.63 2.29 -173.48 -0.40 -14.03 16 20 C 0.16 3.89 8.10 59.84 0.49 4.37 16 21 C -0.26 -6.55 9.33 -15.06 -0.14 -6.69 16 22 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 23 C 0.01 0.16 5.10 -17.43 -0.09 0.07 16 24 N -0.90 -24.50 10.64 55.49 0.59 -23.91 16 25 Si 0.90 20.78 29.57 -169.99 -5.03 15.75 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.88 6.66 -51.93 -0.35 0.53 16 32 H 0.06 1.20 7.84 -51.93 -0.41 0.80 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.41 8.30 5.91 -40.82 -0.24 8.06 16 35 H 0.16 2.70 6.36 -52.49 -0.33 2.37 16 36 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.03 0.75 7.42 -51.92 -0.39 0.37 16 41 H 0.04 1.09 7.20 -51.93 -0.37 0.72 16 42 H 0.00 -0.03 6.43 -51.93 -0.33 -0.36 16 43 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -31.07 361.54 -8.55 -39.61 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.33 Total: 6.30 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -3.53 Total: 5.50 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.22 Total: -59.21 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.07 -8.55 -39.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282466607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.347 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds