Wall clock time and date at job start Sat Apr 11 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99727 * 2 1 4 4 H 1.48498 * 109.47238 * 269.99962 * 3 2 1 5 5 H 1.48506 * 109.47360 * 30.00301 * 3 2 1 6 6 H 1.48503 * 109.46770 * 150.00178 * 3 2 1 7 7 C 1.37872 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47173 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47050 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.46970 * 179.97438 * 11 10 9 13 13 O 1.42093 * 110.54483 * 68.37452 * 12 11 10 14 14 O 1.42099 * 110.54208 * 291.62364 * 12 11 10 15 15 N 1.65598 * 104.44833 * 180.02562 * 12 11 10 16 16 C 1.46509 * 120.00086 * 64.72415 * 15 12 11 17 17 C 1.52996 * 109.47041 * 164.42247 * 16 15 12 18 18 C 1.53005 * 112.85019 * 292.84450 * 17 16 15 19 19 O 1.42897 * 112.84897 * 160.02953 * 18 17 16 20 20 C 1.53788 * 113.61078 * 28.73090 * 18 17 16 21 21 C 1.53781 * 87.07890 * 220.01563 * 20 18 17 22 22 C 1.53775 * 113.61601 * 291.23660 * 18 17 16 23 23 C 1.53780 * 113.61078 * 161.65428 * 17 16 15 24 24 C 1.54045 * 86.98338 * 270.83408 * 23 17 16 25 25 C 1.53775 * 113.61614 * 64.04317 * 17 16 15 26 26 H 0.97001 * 120.00344 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46880 * 60.00463 * 9 7 2 28 28 H 1.09003 * 109.47112 * 300.00104 * 9 7 2 29 29 H 1.09002 * 109.47234 * 59.99655 * 10 9 7 30 30 H 1.09003 * 109.46728 * 299.99778 * 10 9 7 31 31 H 1.08998 * 109.46991 * 59.99909 * 11 10 9 32 32 H 1.08998 * 109.47144 * 299.99959 * 11 10 9 33 33 H 0.96998 * 120.00054 * 244.99929 * 15 12 11 34 34 H 1.08999 * 109.46605 * 284.42119 * 16 15 12 35 35 H 1.09000 * 109.46564 * 44.42103 * 16 15 12 36 36 H 0.96698 * 113.99692 * 179.97438 * 19 18 17 37 37 H 1.08990 * 113.61514 * 334.56532 * 20 18 17 38 38 H 1.08997 * 113.61526 * 105.46987 * 20 18 17 39 39 H 1.08996 * 113.61401 * 270.88734 * 21 20 18 40 40 H 1.09004 * 113.61574 * 139.98161 * 21 20 18 41 41 H 1.09006 * 113.60866 * 254.52529 * 22 18 17 42 42 H 1.08996 * 113.61608 * 25.34518 * 22 18 17 43 43 H 1.08995 * 113.61925 * 25.43263 * 23 17 16 44 44 H 1.09004 * 113.61275 * 156.33692 * 23 17 16 45 45 H 1.09001 * 113.62316 * 220.01891 * 24 23 17 46 46 H 1.09002 * 113.68865 * 89.13092 * 24 23 17 47 47 H 1.09002 * 113.61703 * 203.66370 * 25 17 16 48 48 H 1.09001 * 113.61598 * 334.48340 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6592 -6.3659 -0.0019 13 8 3.3560 -6.4268 1.2349 14 8 3.3558 -6.4255 -1.2390 15 7 1.7088 -7.7220 -0.0033 16 6 0.8451 -8.0101 -1.1511 17 6 0.3836 -9.4675 -1.0889 18 6 1.5277 -10.4623 -1.2942 19 8 1.2228 -11.7683 -0.8007 20 6 2.8956 -9.9316 -0.8335 21 6 3.4886 -10.6007 -2.0847 22 6 2.0965 -10.4608 -2.7229 23 6 -0.8507 -9.7603 -1.9582 24 6 -1.7030 -9.3824 -0.7319 25 6 -0.4959 -9.7836 0.1323 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8721 -3.6043 0.8894 30 1 2.8719 -3.6043 -0.8906 31 1 0.8540 -5.0446 -0.8914 32 1 0.8534 -5.0451 0.8886 33 1 1.7210 -8.3235 0.7575 34 1 -0.0237 -7.3524 -1.1260 35 1 1.4003 -7.8438 -2.0743 36 1 1.9350 -12.4109 -0.9225 37 1 2.9681 -8.8441 -0.8440 38 1 3.2418 -10.3708 0.1021 39 1 3.7933 -11.6347 -1.9239 40 1 4.2565 -10.0036 -2.5767 41 1 1.7975 -11.3274 -3.3127 42 1 1.9492 -9.5185 -3.2505 43 1 -0.9650 -9.0760 -2.7989 44 1 -0.9424 -10.8071 -2.2478 45 1 -2.5734 -10.0232 -0.5907 46 1 -1.9456 -8.3211 -0.6775 47 1 -0.4908 -10.8367 0.4132 48 1 -0.3230 -9.1189 0.9787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885786708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:49:49 Heat of formation + Delta-G solvation = -85.806834 kcal Electronic energy + Delta-G solvation = -27825.327740 eV Core-core repulsion = 24008.760394 eV Total energy + Delta-G solvation = -3816.567346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25287 -38.00934 -36.95606 -35.85665 -35.20904 -34.69885 -34.08434 -32.20930 -28.31433 -27.85109 -26.41106 -25.43191 -25.26101 -23.74383 -22.72765 -20.71005 -19.89932 -19.26551 -18.88720 -17.59355 -17.14659 -16.71809 -16.56160 -16.15080 -15.74228 -15.35911 -15.00292 -14.71261 -14.51071 -14.25018 -14.04794 -13.72965 -13.36836 -13.16200 -12.63990 -12.52903 -12.39640 -12.30426 -12.08448 -11.98381 -11.89741 -11.81997 -11.77770 -11.59671 -11.26478 -11.14159 -11.02888 -10.93747 -10.87421 -10.71497 -10.59676 -10.45762 -9.98239 -9.96780 -9.77483 -9.54953 -9.29168 -9.06514 -8.42332 -6.07305 -4.10458 0.40162 2.76476 3.29419 3.35625 3.39665 3.68858 3.88644 4.01149 4.23098 4.27901 4.38432 4.41118 4.48200 4.56457 4.61070 4.64372 4.86368 4.96583 5.13974 5.15663 5.17714 5.29077 5.31832 5.35153 5.50221 5.55359 5.58175 5.65673 5.70633 5.72833 5.74941 5.78510 5.80415 5.85593 5.89807 6.05354 6.18695 6.23301 6.27694 6.41518 6.82352 6.85510 7.36311 7.54748 7.64516 7.90553 8.30901 8.95727 9.54406 11.03890 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.002771 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.041920 B =10102.240205 C =10794.795677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.596 3.404 13 O -0.961 6.961 14 O -0.960 6.960 15 N -1.121 6.121 16 C 0.138 3.862 17 C -0.069 4.069 18 C 0.131 3.869 19 O -0.539 6.539 20 C -0.190 4.190 21 C -0.150 4.150 22 C -0.165 4.165 23 C -0.121 4.121 24 C -0.145 4.145 25 C -0.124 4.124 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.418 0.582 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.376 0.624 37 H 0.115 0.885 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 -25.053 -3.534 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.741 4.741 12 S 2.692 3.308 13 O -0.951 6.951 14 O -0.950 6.950 15 N -0.880 5.880 16 C 0.012 3.988 17 C -0.070 4.070 18 C 0.090 3.910 19 O -0.345 6.345 20 C -0.228 4.228 21 C -0.188 4.188 22 C -0.202 4.202 23 C -0.159 4.159 24 C -0.182 4.182 25 C -0.162 4.162 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.253 0.747 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.224 0.776 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.101 0.899 47 H 0.113 0.887 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.795 -24.545 -3.536 24.811 hybrid contribution 0.292 0.574 0.141 0.659 sum -0.503 -23.971 -3.395 24.216 Atomic orbital electron populations 1.69957 1.06087 1.26800 1.50573 1.25018 0.94891 0.99378 0.95079 0.86554 0.79890 0.83161 0.78202 1.20554 1.21162 1.19731 1.21252 0.93257 0.90891 1.51100 0.92370 1.19062 0.93511 0.90437 0.97738 1.21508 0.99406 0.91674 1.01975 1.30546 1.16384 1.15883 1.11312 1.05471 0.75793 0.75177 0.74343 1.93589 1.70675 1.85800 1.45051 1.93576 1.70190 1.85692 1.45499 1.55940 1.61837 1.42276 1.27928 1.21094 0.94226 0.94573 0.88940 1.21759 0.93087 0.92563 0.99596 1.21879 0.92640 0.83387 0.93139 1.86410 1.45021 1.19563 1.83484 1.24335 0.96058 1.04366 0.98006 1.22880 0.97338 1.00646 0.97927 1.23648 0.96328 1.03153 0.97089 1.22925 0.93967 1.02252 0.96724 1.22924 0.97207 1.01618 0.96487 1.22879 0.94769 1.02644 0.95875 0.92884 0.96108 0.96109 0.91578 0.91557 0.85460 0.85193 0.74672 0.90549 0.89543 0.77622 0.86672 0.91235 0.90656 0.90683 0.91098 0.88903 0.91106 0.89384 0.91417 0.89902 0.88713 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 10 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 11 C -0.61 -9.02 6.07 37.16 0.23 -8.80 16 12 S 2.60 36.31 5.16 -107.50 -0.55 35.75 16 13 O -0.96 -16.41 18.08 -57.54 -1.04 -17.45 16 14 O -0.96 -15.77 16.88 -57.54 -0.97 -16.74 16 15 N -1.12 -11.42 3.27 -10.61 -0.03 -11.45 16 16 C 0.14 1.25 4.61 -4.04 -0.02 1.23 16 17 C -0.07 -0.57 0.55 -153.70 -0.08 -0.66 16 18 C 0.13 1.11 1.29 -89.80 -0.12 1.00 16 19 O -0.54 -4.40 12.06 -35.23 -0.42 -4.83 16 20 C -0.19 -1.84 6.19 -25.91 -0.16 -2.00 16 21 C -0.15 -1.28 7.76 -25.92 -0.20 -1.48 16 22 C -0.16 -1.35 7.03 -25.92 -0.18 -1.53 16 23 C -0.12 -0.92 6.96 -25.78 -0.18 -1.10 16 24 C -0.14 -1.10 7.74 -25.78 -0.20 -1.30 16 25 C -0.12 -1.04 6.81 -25.92 -0.18 -1.21 16 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.13 1.64 8.14 -51.92 -0.42 1.21 16 32 H 0.13 1.73 8.14 -51.93 -0.42 1.30 16 33 H 0.42 3.80 7.24 -34.47 -0.25 3.55 16 34 H 0.08 0.58 7.32 -51.93 -0.38 0.20 16 35 H 0.09 0.80 6.60 -51.93 -0.34 0.46 16 36 H 0.38 1.97 8.33 45.56 0.38 2.35 16 37 H 0.12 1.29 3.74 -51.93 -0.19 1.09 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.50 7.80 -51.93 -0.40 0.10 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.80 7.13 -51.93 -0.37 0.43 16 43 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 44 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.61 7.62 -51.93 -0.40 0.22 16 47 H 0.09 0.86 6.97 -51.93 -0.36 0.50 16 48 H 0.07 0.56 7.45 -51.93 -0.39 0.17 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -34.46 383.16 -10.63 -45.09 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.32 Total: 4.06 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: -1.78 Total: -30.99 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.70 Total: -37.13 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -2.44 Total: -39.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 36.31 SS G_CDS: -0.55 Total: 35.75 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.46 -10.63 -45.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885786708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.717 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds