Wall clock time and date at job start Sat Apr 11 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99727 * 2 1 4 4 H 1.48498 * 109.47238 * 269.99962 * 3 2 1 5 5 H 1.48506 * 109.47360 * 30.00301 * 3 2 1 6 6 H 1.48503 * 109.46770 * 150.00178 * 3 2 1 7 7 C 1.37872 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00125 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47173 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47050 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.46970 * 179.97438 * 11 10 9 13 13 O 1.42093 * 110.54483 * 68.37452 * 12 11 10 14 14 O 1.42099 * 110.54208 * 291.62364 * 12 11 10 15 15 N 1.65598 * 104.44833 * 180.02562 * 12 11 10 16 16 C 1.46509 * 120.00086 * 64.72415 * 15 12 11 17 17 C 1.52996 * 109.47041 * 164.42247 * 16 15 12 18 18 C 1.53005 * 112.85019 * 292.84450 * 17 16 15 19 19 O 1.42897 * 112.84897 * 160.02953 * 18 17 16 20 20 C 1.53788 * 113.61078 * 28.73090 * 18 17 16 21 21 C 1.53781 * 87.07890 * 220.01563 * 20 18 17 22 22 C 1.53775 * 113.61601 * 291.23660 * 18 17 16 23 23 C 1.53780 * 113.61078 * 161.65428 * 17 16 15 24 24 C 1.54045 * 86.98338 * 270.83408 * 23 17 16 25 25 C 1.53775 * 113.61614 * 64.04317 * 17 16 15 26 26 H 0.97001 * 120.00344 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46880 * 60.00463 * 9 7 2 28 28 H 1.09003 * 109.47112 * 300.00104 * 9 7 2 29 29 H 1.09002 * 109.47234 * 59.99655 * 10 9 7 30 30 H 1.09003 * 109.46728 * 299.99778 * 10 9 7 31 31 H 1.08998 * 109.46991 * 59.99909 * 11 10 9 32 32 H 1.08998 * 109.47144 * 299.99959 * 11 10 9 33 33 H 0.96998 * 120.00054 * 244.99929 * 15 12 11 34 34 H 1.08999 * 109.46605 * 284.42119 * 16 15 12 35 35 H 1.09000 * 109.46564 * 44.42103 * 16 15 12 36 36 H 0.96698 * 113.99692 * 179.97438 * 19 18 17 37 37 H 1.08990 * 113.61514 * 334.56532 * 20 18 17 38 38 H 1.08997 * 113.61526 * 105.46987 * 20 18 17 39 39 H 1.08996 * 113.61401 * 270.88734 * 21 20 18 40 40 H 1.09004 * 113.61574 * 139.98161 * 21 20 18 41 41 H 1.09006 * 113.60866 * 254.52529 * 22 18 17 42 42 H 1.08996 * 113.61608 * 25.34518 * 22 18 17 43 43 H 1.08995 * 113.61925 * 25.43263 * 23 17 16 44 44 H 1.09004 * 113.61275 * 156.33692 * 23 17 16 45 45 H 1.09001 * 113.62316 * 220.01891 * 24 23 17 46 46 H 1.09002 * 113.68865 * 89.13092 * 24 23 17 47 47 H 1.09002 * 113.61703 * 203.66370 * 25 17 16 48 48 H 1.09001 * 113.61598 * 334.48340 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 16 2.6592 -6.3659 -0.0019 13 8 3.3560 -6.4268 1.2349 14 8 3.3558 -6.4255 -1.2390 15 7 1.7088 -7.7220 -0.0033 16 6 0.8451 -8.0101 -1.1511 17 6 0.3836 -9.4675 -1.0889 18 6 1.5277 -10.4623 -1.2942 19 8 1.2228 -11.7683 -0.8007 20 6 2.8956 -9.9316 -0.8335 21 6 3.4886 -10.6007 -2.0847 22 6 2.0965 -10.4608 -2.7229 23 6 -0.8507 -9.7603 -1.9582 24 6 -1.7030 -9.3824 -0.7319 25 6 -0.4959 -9.7836 0.1323 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 2.8721 -3.6043 0.8894 30 1 2.8719 -3.6043 -0.8906 31 1 0.8540 -5.0446 -0.8914 32 1 0.8534 -5.0451 0.8886 33 1 1.7210 -8.3235 0.7575 34 1 -0.0237 -7.3524 -1.1260 35 1 1.4003 -7.8438 -2.0743 36 1 1.9350 -12.4109 -0.9225 37 1 2.9681 -8.8441 -0.8440 38 1 3.2418 -10.3708 0.1021 39 1 3.7933 -11.6347 -1.9239 40 1 4.2565 -10.0036 -2.5767 41 1 1.7975 -11.3274 -3.3127 42 1 1.9492 -9.5185 -3.2505 43 1 -0.9650 -9.0760 -2.7989 44 1 -0.9424 -10.8071 -2.2478 45 1 -2.5734 -10.0232 -0.5907 46 1 -1.9456 -8.3211 -0.6775 47 1 -0.4908 -10.8367 0.4132 48 1 -0.3230 -9.1189 0.9787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885786708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:49:48 Heat of formation + Delta-G solvation = -110.520976 kcal Electronic energy + Delta-G solvation = -27826.399425 eV Core-core repulsion = 24008.760394 eV Total energy + Delta-G solvation = -3817.639031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.91388 -38.65448 -38.20753 -37.09923 -36.47201 -35.98157 -34.79859 -34.16567 -29.66597 -29.01008 -27.07828 -26.14175 -25.92894 -25.60618 -23.36034 -22.43030 -20.58084 -20.34659 -19.63258 -18.74259 -18.42338 -17.93757 -17.46005 -17.10793 -17.00819 -16.49727 -16.31424 -15.78514 -15.64910 -15.26264 -14.79468 -14.53882 -14.49403 -14.07389 -14.04672 -13.91424 -13.52000 -13.30229 -13.16695 -13.14417 -13.01941 -12.98682 -12.88084 -12.75672 -12.62776 -12.47096 -12.32168 -12.15421 -11.80085 -11.75361 -11.69986 -11.38392 -11.36239 -11.21137 -11.13383 -10.60478 -10.57398 -10.42571 -10.08794 -8.22814 -6.33678 -0.76772 1.40313 1.40810 1.52188 1.73715 2.39708 2.71638 3.10807 3.11226 3.19697 3.34972 3.59728 3.65468 3.73231 3.85920 3.89775 3.90175 3.96829 4.03265 4.20201 4.31610 4.39058 4.53376 4.62768 4.67465 4.71579 4.84223 4.87747 4.89443 4.96011 5.03102 5.04882 5.06546 5.07010 5.08520 5.14162 5.18421 5.24008 5.41487 5.45408 5.52409 5.63129 5.66107 5.79477 6.02993 6.19726 6.81947 6.86641 7.35686 8.88578 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020689 B = 0.002771 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.041920 B =10102.240205 C =10794.795677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.611 4.611 12 S 2.627 3.373 13 O -0.992 6.992 14 O -0.983 6.983 15 N -1.104 6.104 16 C 0.128 3.872 17 C -0.070 4.070 18 C 0.137 3.863 19 O -0.546 6.546 20 C -0.201 4.201 21 C -0.150 4.150 22 C -0.162 4.162 23 C -0.116 4.116 24 C -0.143 4.143 25 C -0.125 4.125 26 H 0.265 0.735 27 H 0.005 0.995 28 H 0.003 0.997 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.425 0.575 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.389 0.611 37 H 0.100 0.900 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.168 -25.932 -3.922 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.742 4.742 12 S 2.722 3.278 13 O -0.982 6.982 14 O -0.973 6.973 15 N -0.866 5.866 16 C 0.003 3.997 17 C -0.071 4.071 18 C 0.096 3.904 19 O -0.353 6.353 20 C -0.239 4.239 21 C -0.188 4.188 22 C -0.200 4.200 23 C -0.154 4.154 24 C -0.181 4.181 25 C -0.163 4.163 26 H 0.074 0.926 27 H 0.023 0.977 28 H 0.021 0.979 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.263 0.737 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.238 0.762 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.917 -25.434 -3.921 25.750 hybrid contribution 0.309 0.757 0.258 0.857 sum -0.608 -24.677 -3.663 24.955 Atomic orbital electron populations 1.70066 1.07583 1.27888 1.51360 1.25917 0.95811 1.03172 0.94590 0.85497 0.78712 0.78596 0.78587 1.19669 1.20561 1.18960 1.21746 0.93726 0.92573 1.51057 0.92233 1.18958 0.93994 0.91740 0.95989 1.21318 0.98710 0.92593 1.02025 1.30520 1.16733 1.13622 1.13337 1.04356 0.75295 0.75159 0.72996 1.93543 1.71848 1.86404 1.46388 1.93545 1.71078 1.86173 1.46461 1.55532 1.61730 1.40643 1.28725 1.21347 0.94546 0.95655 0.88193 1.21752 0.93345 0.91965 1.00081 1.21783 0.91972 0.83598 0.93070 1.86391 1.45849 1.19596 1.83493 1.24362 0.97467 1.03520 0.98586 1.22930 0.97198 1.01477 0.97171 1.23624 0.95957 1.03366 0.97036 1.22906 0.93196 1.02400 0.96911 1.22937 0.97070 1.01950 0.96107 1.22862 0.95230 1.02237 0.95951 0.92627 0.97660 0.97905 0.91780 0.91450 0.83336 0.83540 0.73708 0.88686 0.89679 0.76156 0.88248 0.91260 0.88656 0.91978 0.90008 0.89442 0.90310 0.89479 0.91066 0.89481 0.89428 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.28 9.11 25.60 0.23 -31.04 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.60 4.97 29.85 0.15 1.75 16 10 C -0.11 -4.28 5.16 30.59 0.16 -4.12 16 11 C -0.61 -17.49 6.07 71.98 0.44 -17.06 16 12 S 2.63 71.38 5.16 -56.49 -0.29 71.09 16 13 O -0.99 -33.41 18.08 -127.65 -2.31 -35.72 16 14 O -0.98 -31.74 16.88 -127.65 -2.15 -33.89 16 15 N -1.10 -21.05 3.27 -187.48 -0.61 -21.67 16 16 C 0.13 2.09 4.61 86.38 0.40 2.49 16 17 C -0.07 -1.04 0.55 -51.66 -0.03 -1.07 16 18 C 0.14 2.11 1.29 -10.27 -0.01 2.10 16 19 O -0.55 -7.88 12.06 -148.98 -1.80 -9.67 16 20 C -0.20 -3.68 6.19 31.12 0.19 -3.49 16 21 C -0.15 -2.37 7.76 31.12 0.24 -2.13 16 22 C -0.16 -2.40 7.03 31.12 0.22 -2.18 16 23 C -0.12 -1.53 6.96 31.21 0.22 -1.31 16 24 C -0.14 -1.89 7.74 31.21 0.24 -1.65 16 25 C -0.13 -1.87 6.81 31.12 0.21 -1.66 16 26 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.15 3.58 8.14 -2.39 -0.02 3.56 16 32 H 0.15 3.70 8.14 -2.39 -0.02 3.68 16 33 H 0.43 7.18 7.24 -96.75 -0.70 6.48 16 34 H 0.10 1.22 7.32 -2.39 -0.02 1.20 16 35 H 0.09 1.46 6.60 -2.39 -0.02 1.44 16 36 H 0.39 3.25 8.33 -74.06 -0.62 2.64 16 37 H 0.10 2.15 3.74 -2.39 -0.01 2.14 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 1.09 7.80 -2.39 -0.02 1.07 16 40 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.09 1.39 7.13 -2.39 -0.02 1.37 16 43 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 44 H 0.09 1.19 8.10 -2.39 -0.02 1.17 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.09 1.08 7.62 -2.39 -0.02 1.06 16 47 H 0.09 1.46 6.97 -2.39 -0.02 1.44 16 48 H 0.07 1.00 7.45 -2.39 -0.02 0.99 16 Total: -1.00 -73.47 383.16 -2.09 -75.55 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -0.35 Total: 22.05 kcal Atomic # 6 Polarization: -61.83 SS G_CDS: 3.12 Total: -58.71 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -0.33 Total: -76.70 kcal Atomic # 8 Polarization: -73.02 SS G_CDS: -6.26 Total: -79.28 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 71.38 SS G_CDS: -0.29 Total: 71.09 kcal Total: -73.47 -2.09 -75.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885786708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.968 kcal (2) G-P(sol) polarization free energy of solvation -73.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds