Wall clock time and date at job start Sat Apr 11 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47379 * 2 1 4 4 N 1.46507 * 109.47048 * 119.99466 * 2 1 3 5 5 C 1.34773 * 120.00108 * 275.00270 * 4 2 1 6 6 O 1.21727 * 120.00073 * 0.02562 * 5 4 2 7 7 C 1.46252 * 120.00203 * 179.97438 * 5 4 2 8 8 C 1.35024 * 120.00151 * 179.97438 * 7 5 4 9 9 C 1.46962 * 120.00028 * 180.02562 * 8 7 5 10 10 C 1.40024 * 120.10169 * 359.71926 * 9 8 7 11 11 C 1.37594 * 119.89627 * 179.70152 * 10 9 8 12 12 C 1.39170 * 120.10228 * 0.59569 * 11 10 9 13 13 O 1.35571 * 119.90073 * 179.69426 * 12 11 10 14 14 C 1.34775 * 117.00206 * 174.42695 * 13 12 11 15 15 H 1.08004 * 120.00620 * 5.05967 * 14 13 12 16 16 C 1.38724 * 120.00450 * 185.06073 * 14 13 12 17 17 N 1.31509 * 119.99659 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00490 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46922 * 60.00127 * 18 16 14 20 20 H 1.48501 * 109.47198 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47197 * 300.00291 * 18 16 14 22 22 C 1.39179 * 120.20319 * 359.68419 * 12 11 10 23 23 C 1.37594 * 120.10200 * 0.02562 * 22 12 11 24 24 C 1.52992 * 109.47322 * 239.99217 * 2 1 3 25 25 H 1.09004 * 110.27467 * 65.64059 * 24 2 1 26 26 C 1.54949 * 110.31287 * 187.83589 * 24 2 1 27 27 C 1.55305 * 100.94329 * 155.36154 * 26 24 2 28 28 C 1.54387 * 102.25141 * 325.86850 * 27 26 24 29 29 O 1.43232 * 107.58837 * 21.35781 * 28 27 26 30 30 H 1.09000 * 109.47218 * 300.00984 * 1 2 3 31 31 H 1.08997 * 109.46921 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46593 * 60.00158 * 1 2 3 33 33 H 0.96999 * 119.99679 * 94.99514 * 4 2 1 34 34 H 1.08001 * 119.99990 * 359.97438 * 7 5 4 35 35 H 1.08001 * 119.99859 * 359.97438 * 8 7 5 36 36 H 1.08008 * 120.04770 * 0.02562 * 10 9 8 37 37 H 1.08003 * 119.94838 * 180.28244 * 11 10 9 38 38 H 0.96995 * 120.00391 * 180.02562 * 17 16 14 39 39 H 1.07997 * 119.94876 * 179.97438 * 22 12 11 40 40 H 1.07999 * 120.05328 * 179.97438 * 23 22 12 41 41 H 1.09000 * 111.12428 * 273.28456 * 26 24 2 42 42 H 1.08997 * 111.12082 * 37.44391 * 26 24 2 43 43 H 1.08996 * 110.84537 * 207.67588 * 27 26 24 44 44 H 1.09001 * 111.02175 * 84.13772 * 27 26 24 45 45 H 1.09000 * 109.82610 * 261.83962 * 28 27 26 46 46 H 1.08997 * 109.82576 * 140.87119 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8570 1.1628 2.4119 7 6 2.6340 -0.7076 3.5516 8 6 2.7633 -0.0338 4.7145 9 6 3.2532 -0.7265 5.9145 10 6 3.5808 -2.0866 5.8557 11 6 4.0449 -2.7294 6.9803 12 6 4.1771 -2.0330 8.1779 13 8 4.6289 -2.6720 9.2849 14 6 4.8443 -1.9184 10.3813 15 1 4.5803 -0.8711 10.3773 16 6 5.4052 -2.4877 11.5152 17 7 5.7272 -3.7628 11.5201 18 14 5.7031 -1.4434 13.0351 19 1 4.4123 -0.8871 13.5141 20 1 6.3062 -2.2824 14.1017 21 1 6.6270 -0.3308 12.6979 22 6 3.8472 -0.6824 8.2425 23 6 3.3880 -0.0298 7.1216 24 6 2.0400 -0.7214 -1.2491 25 1 1.7683 -0.1632 -2.1450 26 6 3.5766 -0.9066 -1.1736 27 6 3.7711 -2.1371 -2.1009 28 6 2.4863 -2.9517 -1.8381 29 8 1.5043 -2.0528 -1.3097 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 -0.8900 33 1 2.2489 -1.6317 1.1528 34 1 2.8901 -1.7557 3.5034 35 1 2.5076 1.0144 4.7626 36 1 3.4743 -2.6289 4.9278 37 1 4.3021 -3.7774 6.9347 38 1 6.1190 -4.1611 12.3129 39 1 3.9510 -0.1460 9.1741 40 1 3.1318 1.0181 7.1728 41 1 4.0973 -0.0329 -1.5656 42 1 3.8959 -1.1277 -0.1552 43 1 4.6560 -2.7043 -1.8121 44 1 3.8310 -1.8335 -3.1460 45 1 2.6909 -3.7421 -1.1159 46 1 2.1264 -3.3857 -2.7709 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027859590.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:49:45 Heat of formation + Delta-G solvation = -76.077160 kcal Electronic energy + Delta-G solvation = -26784.292075 eV Core-core repulsion = 22832.702688 eV Total energy + Delta-G solvation = -3951.589387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.42382 -39.28834 -38.97115 -36.90618 -35.35859 -33.20186 -32.50835 -32.32667 -31.30056 -30.42326 -28.63400 -28.09051 -25.69736 -24.27759 -23.17725 -22.17969 -21.97294 -21.14124 -20.40108 -19.38750 -18.21408 -17.42523 -17.16052 -16.88601 -16.40998 -15.78758 -15.00409 -14.85921 -14.76338 -14.57740 -14.42795 -14.00493 -13.82666 -13.78371 -13.47596 -13.37089 -13.31190 -13.02246 -12.58919 -12.41501 -12.23094 -11.92295 -11.88002 -11.76368 -11.71310 -11.46450 -11.27245 -11.10500 -11.07685 -11.02224 -10.70155 -10.54448 -9.97667 -9.71484 -9.59182 -9.49689 -9.09660 -8.84076 -8.37919 -7.10866 -6.64859 -4.19822 1.08795 2.13853 2.57280 3.04136 3.05764 3.08102 3.23221 3.36131 3.61904 3.82484 4.04375 4.25600 4.46245 4.51474 4.67965 4.79803 4.85811 4.92643 5.04400 5.05991 5.12445 5.25557 5.28368 5.30762 5.33576 5.42422 5.47510 5.53512 5.56496 5.65295 5.67651 5.71505 5.83034 6.01689 6.12387 6.13483 6.41377 6.48285 6.51343 6.60500 6.64071 6.79742 6.92161 7.13419 7.24165 7.28725 7.60598 7.64360 7.80344 8.38193 8.79760 9.46859 10.51695 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.024638 B = 0.001836 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.200865 B =15243.354971 C =15956.555695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.147 3.853 3 H 0.097 0.903 4 N -0.724 5.724 5 C 0.556 3.444 6 O -0.560 6.560 7 C -0.282 4.282 8 C 0.038 3.962 9 C -0.198 4.198 10 C -0.043 4.043 11 C -0.200 4.200 12 C 0.167 3.833 13 O -0.162 6.162 14 C -0.393 4.393 15 H 0.097 0.903 16 C 0.042 3.958 17 N -0.852 5.852 18 Si 0.945 3.055 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.268 1.268 22 C -0.242 4.242 23 C -0.035 4.035 24 C 0.073 3.927 25 H 0.083 0.917 26 C -0.155 4.155 27 C -0.157 4.157 28 C 0.049 3.951 29 O -0.375 6.375 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.401 0.599 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.275 0.725 39 H 0.131 0.869 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.521 3.660 -23.685 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.042 3.958 3 H 0.115 0.885 4 N -0.376 5.376 5 C 0.348 3.652 6 O -0.441 6.441 7 C -0.303 4.303 8 C 0.018 3.982 9 C -0.199 4.199 10 C -0.061 4.061 11 C -0.219 4.219 12 C 0.110 3.890 13 O -0.063 6.063 14 C -0.469 4.469 15 H 0.114 0.886 16 C -0.165 4.165 17 N -0.485 5.485 18 Si 0.769 3.231 19 H -0.193 1.193 20 H -0.201 1.201 21 H -0.192 1.192 22 C -0.261 4.261 23 C -0.054 4.054 24 C 0.015 3.985 25 H 0.101 0.899 26 C -0.192 4.192 27 C -0.194 4.194 28 C -0.028 4.028 29 O -0.294 6.294 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.236 0.764 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.085 0.915 39 H 0.149 0.851 40 H 0.132 0.868 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.760 3.992 -23.349 24.161 hybrid contribution 0.493 -0.006 0.596 0.773 sum -4.267 3.986 -22.753 23.490 Atomic orbital electron populations 1.22075 0.94726 1.02786 1.02151 1.21006 0.94954 0.96686 0.83180 0.88531 1.45874 1.68237 1.14074 1.09368 1.18414 0.76856 0.86451 0.83440 1.90768 1.51776 1.16157 1.85390 1.22440 1.13790 1.00924 0.93187 1.22279 0.86724 0.98498 0.90717 1.18468 1.13522 0.94390 0.93564 1.20880 0.95140 0.93228 0.96872 1.20147 1.10183 1.00496 0.91061 1.19612 0.90987 0.90819 0.87565 1.83901 1.69561 1.36001 1.16858 1.21425 1.42362 0.94282 0.88825 0.88597 1.25396 0.95683 0.96491 0.98905 1.70001 1.37511 1.10969 1.30019 0.85714 0.79243 0.78953 0.79223 1.19255 1.20090 1.19245 1.21099 1.09969 0.95287 0.99795 1.20989 0.94480 0.98317 0.91567 1.23326 0.92610 0.85009 0.97542 0.89911 1.23339 0.95645 0.98784 1.01458 1.23127 0.98801 0.96953 1.00560 1.23146 0.87879 0.92915 0.98848 1.88450 1.38218 1.17414 1.85331 0.92005 0.91628 0.92061 0.76395 0.85995 0.85953 0.86439 0.86153 0.91549 0.85132 0.86818 0.89723 0.89519 0.89850 0.90575 0.91100 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.31 37.16 0.35 -1.22 16 2 C 0.15 1.41 2.56 -67.93 -0.17 1.23 16 3 H 0.10 1.02 7.58 -51.93 -0.39 0.62 16 4 N -0.72 -7.68 4.03 -55.25 -0.22 -7.91 16 5 C 0.56 7.74 7.70 -13.04 -0.10 7.64 16 6 O -0.56 -9.61 15.89 5.16 0.08 -9.53 16 7 C -0.28 -3.87 9.41 -37.51 -0.35 -4.22 16 8 C 0.04 0.57 9.45 -37.19 -0.35 0.22 16 9 C -0.20 -3.39 5.87 -105.02 -0.62 -4.01 16 10 C -0.04 -0.73 9.40 -39.15 -0.37 -1.10 16 11 C -0.20 -4.00 9.97 -39.47 -0.39 -4.39 16 12 C 0.17 3.83 6.66 -38.89 -0.26 3.57 16 13 O -0.16 -4.41 9.74 0.76 0.01 -4.40 16 14 C -0.39 -10.45 9.48 30.91 0.29 -10.16 16 15 H 0.10 2.34 5.18 -52.48 -0.27 2.06 16 16 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 17 N -0.85 -23.85 13.67 55.48 0.76 -23.09 16 18 Si 0.94 19.52 29.55 -169.99 -5.02 14.50 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 C -0.24 -5.02 9.14 -39.47 -0.36 -5.38 16 23 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 24 C 0.07 0.55 3.24 -25.71 -0.08 0.47 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 C -0.15 -1.01 6.45 -24.48 -0.16 -1.17 16 27 C -0.16 -0.83 7.02 -24.78 -0.17 -1.00 16 28 C 0.05 0.31 7.79 37.88 0.30 0.60 16 29 O -0.37 -3.23 9.99 -35.23 -0.35 -3.58 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.67 7.63 -51.93 -0.40 0.27 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 3.65 7.90 -40.82 -0.32 3.33 16 34 H 0.12 1.45 6.07 -52.49 -0.32 1.13 16 35 H 0.12 1.86 7.52 -52.49 -0.39 1.46 16 36 H 0.12 1.64 6.16 -52.48 -0.32 1.32 16 37 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.13 2.67 5.62 -52.49 -0.29 2.38 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.65 6.77 -51.93 -0.35 0.29 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -30.80 382.93 -8.35 -39.15 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.43 Total: 8.02 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -2.94 Total: -18.92 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.54 Total: -31.00 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.26 Total: -17.51 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.80 -8.35 -39.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027859590.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.930 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds