Wall clock time and date at job start Sat Apr 11 2020 02:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47342 * 2 1 4 4 N 1.46502 * 109.47302 * 239.99820 * 2 1 3 5 5 C 1.34769 * 120.00008 * 85.00255 * 4 2 1 6 6 O 1.21723 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.46260 * 120.00205 * 180.02562 * 5 4 2 8 8 C 1.35019 * 119.99953 * 179.97438 * 7 5 4 9 9 C 1.46960 * 119.99966 * 179.97438 * 8 7 5 10 10 C 1.40026 * 120.10276 * 179.97438 * 9 8 7 11 11 C 1.37594 * 119.89669 * 179.97438 * 10 9 8 12 12 C 1.39178 * 120.10072 * 0.25350 * 11 10 9 13 13 O 1.35579 * 119.89547 * 179.74679 * 12 11 10 14 14 C 1.34785 * 117.00142 * 354.44508 * 13 12 11 15 15 H 1.08005 * 119.99845 * 5.06100 * 14 13 12 16 16 C 1.38717 * 119.99804 * 185.06117 * 14 13 12 17 17 N 1.31506 * 119.99455 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00326 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47350 * 89.99913 * 18 16 14 20 20 H 1.48497 * 109.47507 * 210.00388 * 18 16 14 21 21 H 1.48509 * 109.47209 * 330.00228 * 18 16 14 22 22 C 1.39173 * 120.20483 * 359.49531 * 12 11 10 23 23 C 1.37597 * 120.09959 * 0.50464 * 22 12 11 24 24 C 1.53003 * 109.46973 * 119.99947 * 2 1 3 25 25 H 1.09006 * 109.87002 * 174.30013 * 24 2 1 26 26 C 1.54105 * 109.87895 * 295.30644 * 24 2 1 27 27 C 1.54801 * 104.18906 * 121.45318 * 26 24 2 28 28 C 1.55003 * 102.09172 * 20.88130 * 27 26 24 29 29 O 1.43737 * 109.88219 * 53.29210 * 24 2 1 30 30 H 1.09003 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47055 * 300.00204 * 1 2 3 32 32 H 1.08997 * 109.46732 * 59.99906 * 1 2 3 33 33 H 0.97000 * 119.99537 * 264.99977 * 4 2 1 34 34 H 1.07994 * 119.99446 * 359.97438 * 7 5 4 35 35 H 1.08003 * 120.00342 * 359.97438 * 8 7 5 36 36 H 1.07997 * 120.04753 * 359.96267 * 10 9 8 37 37 H 1.08001 * 119.95149 * 179.97438 * 11 10 9 38 38 H 0.97001 * 119.99729 * 179.97438 * 17 16 14 39 39 H 1.08004 * 119.95191 * 180.25600 * 22 12 11 40 40 H 1.08000 * 120.05098 * 179.72861 * 23 22 12 41 41 H 1.08999 * 110.48642 * 240.13217 * 26 24 2 42 42 H 1.08995 * 110.48523 * 2.64507 * 26 24 2 43 43 H 1.09007 * 110.90815 * 139.07449 * 27 26 24 44 44 H 1.09000 * 110.91066 * 262.68631 * 27 26 24 45 45 H 1.09003 * 110.61360 * 81.47727 * 28 27 26 46 46 H 1.08998 * 110.61762 * 204.31504 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8573 1.1626 -2.4119 7 6 2.6342 -0.7080 -3.5514 8 6 2.7627 -0.0345 -4.7146 9 6 3.2526 -0.7273 -5.9145 10 6 3.3862 -0.0311 -7.1220 11 6 3.8458 -0.6837 -8.2427 12 6 4.1727 -2.0351 -8.1787 13 8 4.6203 -2.6753 -9.2868 14 6 4.6160 -1.9779 -10.4402 15 1 4.3442 -0.9326 -10.4382 16 6 4.9608 -2.6027 -11.6297 17 7 4.9571 -1.9220 -12.7549 18 14 5.4316 -4.4103 -11.6331 19 1 4.2161 -5.2380 -11.8392 20 1 6.3981 -4.6681 -12.7306 21 1 6.0550 -4.7619 -10.3318 22 6 4.0465 -2.7299 -6.9794 23 6 3.5877 -2.0855 -5.8536 24 6 2.0400 -0.7213 1.2493 25 1 3.1252 -0.8141 1.2064 26 6 1.6306 0.0631 2.5110 27 6 0.7913 -0.9473 3.3303 28 6 1.2571 -2.3053 2.7460 29 8 1.4412 -2.0248 1.3398 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 2.8910 -1.7558 -3.5028 35 1 2.5055 1.0133 -4.7632 36 1 3.1287 1.0165 -7.1736 37 1 3.9488 -0.1477 -9.1747 38 1 5.1986 -2.3588 -13.5867 39 1 4.3052 -3.7774 -6.9333 40 1 3.4859 -2.6265 -4.9244 41 1 2.5130 0.3700 3.0725 42 1 1.0296 0.9317 2.2419 43 1 1.0281 -0.8790 4.3921 44 1 -0.2746 -0.7958 3.1602 45 1 2.1983 -2.6158 3.1999 46 1 0.4923 -3.0682 2.8913 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027859597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:49:48 Heat of formation + Delta-G solvation = -74.355583 kcal Electronic energy + Delta-G solvation = -26551.730489 eV Core-core repulsion = 22600.215755 eV Total energy + Delta-G solvation = -3951.514734 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.42552 -39.42299 -39.10085 -37.05124 -35.36371 -33.23056 -32.70304 -32.44811 -31.22328 -30.50336 -28.55288 -28.15946 -25.69214 -24.63005 -23.15690 -22.30779 -22.05921 -20.90106 -20.50246 -19.27790 -18.09067 -17.47552 -17.20464 -17.00342 -16.47755 -15.80364 -15.47446 -14.97698 -14.87733 -14.66007 -14.24327 -14.08557 -13.99497 -13.95936 -13.58679 -13.48722 -12.83470 -12.77500 -12.59833 -12.39085 -12.37232 -12.12579 -11.89791 -11.86172 -11.76588 -11.70332 -11.41845 -11.17045 -11.05264 -11.00844 -10.74272 -10.26153 -10.12426 -9.77809 -9.62889 -9.53101 -9.13036 -8.89404 -8.44830 -7.21840 -6.58802 -4.22576 1.02282 2.05513 2.50440 3.10721 3.13036 3.16892 3.30206 3.46229 3.57522 4.03566 4.10248 4.28498 4.42298 4.45198 4.55200 4.65276 4.70720 4.82822 4.95622 4.98075 5.08965 5.13295 5.20396 5.23356 5.30114 5.31557 5.45429 5.46760 5.54027 5.57330 5.62431 5.63379 5.77564 5.96235 6.04823 6.08872 6.31406 6.35299 6.42672 6.52776 6.57154 6.69910 6.95285 7.11017 7.18878 7.43801 7.58780 7.64572 7.85891 8.35192 8.74642 9.35089 10.47523 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.030277 B = 0.001718 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.562497 B =16298.806094 C =17023.503998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.147 3.853 3 H 0.095 0.905 4 N -0.725 5.725 5 C 0.556 3.444 6 O -0.560 6.560 7 C -0.276 4.276 8 C 0.034 3.966 9 C -0.188 4.188 10 C -0.037 4.037 11 C -0.230 4.230 12 C 0.173 3.827 13 O -0.203 6.203 14 C -0.392 4.392 15 H 0.111 0.889 16 C 0.066 3.934 17 N -0.867 5.867 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.258 1.258 22 C -0.199 4.199 23 C -0.045 4.045 24 C 0.068 3.932 25 H 0.075 0.925 26 C -0.150 4.150 27 C -0.154 4.154 28 C 0.046 3.954 29 O -0.368 6.368 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.404 0.596 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.283 0.717 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 0.479 29.455 30.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 H 0.113 0.887 4 N -0.377 5.377 5 C 0.348 3.652 6 O -0.441 6.441 7 C -0.297 4.297 8 C 0.014 3.986 9 C -0.189 4.189 10 C -0.056 4.056 11 C -0.249 4.249 12 C 0.119 3.881 13 O -0.106 6.106 14 C -0.467 4.467 15 H 0.128 0.872 16 C -0.139 4.139 17 N -0.503 5.503 18 Si 0.732 3.268 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.182 1.182 22 C -0.219 4.219 23 C -0.064 4.064 24 C 0.010 3.990 25 H 0.093 0.907 26 C -0.188 4.188 27 C -0.192 4.192 28 C -0.030 4.030 29 O -0.288 6.288 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.238 0.762 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.093 0.907 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.507 0.942 28.915 29.653 hybrid contribution 0.374 -0.974 -0.009 1.043 sum -6.134 -0.032 28.906 29.549 Atomic orbital electron populations 1.22098 0.94847 1.02806 1.02041 1.21078 0.94996 0.96671 0.83056 0.88669 1.45873 1.68197 1.14219 1.09368 1.18418 0.76862 0.86456 0.83498 1.90769 1.51733 1.16133 1.85414 1.22480 1.13113 1.00952 0.93145 1.22293 0.87004 0.98639 0.90675 1.18535 1.12414 0.94421 0.93569 1.21042 0.94546 0.98570 0.91420 1.21220 1.08678 0.94916 1.00067 1.19365 0.90512 0.90999 0.87250 1.83507 1.70632 1.41201 1.15249 1.20877 1.47810 0.96493 0.81497 0.87207 1.24534 0.95640 1.00303 0.93449 1.69617 1.44651 1.37519 0.98531 0.86157 0.79068 0.82795 0.78803 1.19654 1.20536 1.18209 1.20145 1.10176 1.00212 0.91324 1.20893 0.95356 0.93254 0.96869 1.23061 0.97455 0.83732 0.94783 0.90739 1.22974 1.00895 0.99447 0.95512 1.23123 1.00956 0.94899 1.00209 1.23579 1.00593 0.97238 0.81637 1.88928 1.82472 1.33189 1.24165 0.91595 0.92093 0.92040 0.76173 0.85868 0.85785 0.86532 0.84511 0.90684 0.86127 0.86216 0.90316 0.89742 0.90154 0.90328 0.92146 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.07 37.16 0.34 -1.15 16 2 C 0.15 1.39 2.32 -67.93 -0.16 1.23 16 3 H 0.10 1.00 7.58 -51.93 -0.39 0.61 16 4 N -0.73 -7.83 5.06 -55.25 -0.28 -8.11 16 5 C 0.56 7.74 7.70 -13.04 -0.10 7.64 16 6 O -0.56 -9.59 15.89 5.17 0.08 -9.51 16 7 C -0.28 -3.72 9.41 -37.50 -0.35 -4.08 16 8 C 0.03 0.50 9.45 -37.19 -0.35 0.15 16 9 C -0.19 -3.13 5.87 -105.03 -0.62 -3.75 16 10 C -0.04 -0.66 9.78 -39.15 -0.38 -1.04 16 11 C -0.23 -4.74 9.14 -39.47 -0.36 -5.10 16 12 C 0.17 3.82 6.66 -38.89 -0.26 3.56 16 13 O -0.20 -5.11 8.57 0.70 0.01 -5.10 16 14 C -0.39 -10.57 9.94 30.91 0.31 -10.26 16 15 H 0.11 3.02 5.41 -52.48 -0.28 2.73 16 16 C 0.07 1.77 5.49 -17.51 -0.10 1.68 16 17 N -0.87 -24.06 13.96 55.48 0.77 -23.28 16 18 Si 0.91 20.73 28.62 -169.99 -4.86 15.87 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 22 C -0.20 -3.74 9.97 -39.47 -0.39 -4.14 16 23 C -0.05 -0.74 9.40 -39.15 -0.37 -1.11 16 24 C 0.07 0.50 3.24 -26.15 -0.08 0.41 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 C -0.15 -0.80 6.16 -25.21 -0.16 -0.95 16 27 C -0.15 -0.69 7.16 -24.72 -0.18 -0.87 16 28 C 0.05 0.25 7.72 38.22 0.30 0.55 16 29 O -0.37 -3.01 10.11 -35.23 -0.36 -3.37 16 30 H 0.06 0.64 7.54 -51.93 -0.39 0.24 16 31 H 0.06 0.45 6.72 -51.93 -0.35 0.10 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.40 3.72 8.44 -40.82 -0.34 3.38 16 34 H 0.12 1.42 6.06 -52.49 -0.32 1.11 16 35 H 0.12 1.86 7.52 -52.48 -0.39 1.46 16 36 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.14 2.94 5.62 -52.49 -0.29 2.65 16 38 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.12 2.08 8.06 -52.48 -0.42 1.65 16 40 H 0.12 1.58 6.16 -52.49 -0.32 1.25 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.44 6.58 -51.93 -0.34 0.10 16 43 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -30.34 381.07 -8.19 -38.53 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.37 Total: 6.46 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.92 Total: -17.23 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 0.49 Total: -31.39 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.27 Total: -17.99 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.86 Total: 15.87 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.34 -8.19 -38.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027859597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.828 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds