Wall clock time and date at job start Sat Apr 11 2020 02:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47342 * 2 1 4 4 N 1.46502 * 109.47302 * 239.99820 * 2 1 3 5 5 C 1.34769 * 120.00008 * 85.00255 * 4 2 1 6 6 O 1.21723 * 120.00323 * 359.97438 * 5 4 2 7 7 C 1.46260 * 120.00205 * 180.02562 * 5 4 2 8 8 C 1.35019 * 119.99953 * 179.97438 * 7 5 4 9 9 C 1.46960 * 119.99966 * 179.97438 * 8 7 5 10 10 C 1.40026 * 120.10276 * 179.97438 * 9 8 7 11 11 C 1.37594 * 119.89669 * 179.97438 * 10 9 8 12 12 C 1.39178 * 120.10072 * 0.25350 * 11 10 9 13 13 O 1.35579 * 119.89547 * 179.74679 * 12 11 10 14 14 C 1.34785 * 117.00142 * 354.44508 * 13 12 11 15 15 H 1.08005 * 119.99845 * 5.06100 * 14 13 12 16 16 C 1.38717 * 119.99804 * 185.06117 * 14 13 12 17 17 N 1.31506 * 119.99455 * 180.02562 * 16 14 13 18 18 Si 1.86792 * 120.00326 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.47350 * 89.99913 * 18 16 14 20 20 H 1.48497 * 109.47507 * 210.00388 * 18 16 14 21 21 H 1.48509 * 109.47209 * 330.00228 * 18 16 14 22 22 C 1.39173 * 120.20483 * 359.49531 * 12 11 10 23 23 C 1.37597 * 120.09959 * 0.50464 * 22 12 11 24 24 C 1.53003 * 109.46973 * 119.99947 * 2 1 3 25 25 H 1.09006 * 109.87002 * 174.30013 * 24 2 1 26 26 C 1.54105 * 109.87895 * 295.30644 * 24 2 1 27 27 C 1.54801 * 104.18906 * 121.45318 * 26 24 2 28 28 C 1.55003 * 102.09172 * 20.88130 * 27 26 24 29 29 O 1.43737 * 109.88219 * 53.29210 * 24 2 1 30 30 H 1.09003 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47055 * 300.00204 * 1 2 3 32 32 H 1.08997 * 109.46732 * 59.99906 * 1 2 3 33 33 H 0.97000 * 119.99537 * 264.99977 * 4 2 1 34 34 H 1.07994 * 119.99446 * 359.97438 * 7 5 4 35 35 H 1.08003 * 120.00342 * 359.97438 * 8 7 5 36 36 H 1.07997 * 120.04753 * 359.96267 * 10 9 8 37 37 H 1.08001 * 119.95149 * 179.97438 * 11 10 9 38 38 H 0.97001 * 119.99729 * 179.97438 * 17 16 14 39 39 H 1.08004 * 119.95191 * 180.25600 * 22 12 11 40 40 H 1.08000 * 120.05098 * 179.72861 * 23 22 12 41 41 H 1.08999 * 110.48642 * 240.13217 * 26 24 2 42 42 H 1.08995 * 110.48523 * 2.64507 * 26 24 2 43 43 H 1.09007 * 110.90815 * 139.07449 * 27 26 24 44 44 H 1.09000 * 110.91066 * 262.68631 * 27 26 24 45 45 H 1.09003 * 110.61360 * 81.47727 * 28 27 26 46 46 H 1.08998 * 110.61762 * 204.31504 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1472 -0.0184 -2.3571 6 8 1.8573 1.1626 -2.4119 7 6 2.6342 -0.7080 -3.5514 8 6 2.7627 -0.0345 -4.7146 9 6 3.2526 -0.7273 -5.9145 10 6 3.3862 -0.0311 -7.1220 11 6 3.8458 -0.6837 -8.2427 12 6 4.1727 -2.0351 -8.1787 13 8 4.6203 -2.6753 -9.2868 14 6 4.6160 -1.9779 -10.4402 15 1 4.3442 -0.9326 -10.4382 16 6 4.9608 -2.6027 -11.6297 17 7 4.9571 -1.9220 -12.7549 18 14 5.4316 -4.4103 -11.6331 19 1 4.2161 -5.2380 -11.8392 20 1 6.3981 -4.6681 -12.7306 21 1 6.0550 -4.7619 -10.3318 22 6 4.0465 -2.7299 -6.9794 23 6 3.5877 -2.0855 -5.8536 24 6 2.0400 -0.7213 1.2493 25 1 3.1252 -0.8141 1.2064 26 6 1.6306 0.0631 2.5110 27 6 0.7913 -0.9473 3.3303 28 6 1.2571 -2.3053 2.7460 29 8 1.4412 -2.0248 1.3398 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 -1.1525 34 1 2.8910 -1.7558 -3.5028 35 1 2.5055 1.0133 -4.7632 36 1 3.1287 1.0165 -7.1736 37 1 3.9488 -0.1477 -9.1747 38 1 5.1986 -2.3588 -13.5867 39 1 4.3052 -3.7774 -6.9333 40 1 3.4859 -2.6265 -4.9244 41 1 2.5130 0.3700 3.0725 42 1 1.0296 0.9317 2.2419 43 1 1.0281 -0.8790 4.3921 44 1 -0.2746 -0.7958 3.1602 45 1 2.1983 -2.6158 3.1999 46 1 0.4923 -3.0682 2.8913 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027859597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:49:47 Heat of formation + Delta-G solvation = -93.041943 kcal Electronic energy + Delta-G solvation = -26552.540790 eV Core-core repulsion = 22600.215755 eV Total energy + Delta-G solvation = -3952.325035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20769 -40.92819 -40.08291 -38.60523 -36.27227 -34.76270 -34.20458 -33.21498 -32.07992 -31.95296 -29.78016 -28.92760 -27.45760 -25.53662 -24.19586 -23.76882 -22.73797 -21.86226 -21.44048 -20.58561 -19.67317 -19.15530 -18.31276 -17.78525 -17.09414 -16.70682 -16.56197 -16.25532 -16.05254 -15.80025 -15.69764 -15.59996 -15.39739 -14.93682 -14.55646 -14.38493 -14.26478 -14.15338 -14.06063 -13.57823 -13.36261 -13.19252 -12.96042 -12.73233 -12.64422 -12.56905 -12.50213 -12.35317 -12.20147 -11.96779 -11.93730 -11.50779 -11.30906 -11.15722 -10.94230 -10.68672 -10.64656 -10.06791 -9.92174 -8.74372 -8.53736 -6.25522 -0.28087 0.54735 1.10737 1.32454 1.37331 1.52288 2.22733 2.26268 2.36172 2.80207 2.92875 3.00017 3.15195 3.55050 3.76228 3.82586 3.92281 3.98729 4.04477 4.06946 4.15739 4.27936 4.33127 4.40068 4.44826 4.46192 4.54905 4.63170 4.74379 4.83495 4.86446 4.91315 4.95073 4.99947 5.11037 5.13479 5.20939 5.21609 5.28190 5.32038 5.38982 5.52250 5.59194 5.70285 5.79957 5.83227 5.95276 6.14185 6.61821 6.79402 7.29113 7.50549 8.57085 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.030277 B = 0.001718 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.562497 B =16298.806094 C =17023.503998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.143 3.857 3 H 0.085 0.915 4 N -0.710 5.710 5 C 0.549 3.451 6 O -0.594 6.594 7 C -0.240 4.240 8 C 0.011 3.989 9 C -0.160 4.160 10 C -0.046 4.046 11 C -0.243 4.243 12 C 0.136 3.864 13 O -0.233 6.233 14 C -0.404 4.404 15 H 0.084 0.916 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.971 3.029 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.194 4.194 23 C -0.040 4.040 24 C 0.073 3.927 25 H 0.077 0.923 26 C -0.150 4.150 27 C -0.150 4.150 28 C 0.040 3.960 29 O -0.388 6.388 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.415 0.585 34 H 0.154 0.846 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.114 0.886 38 H 0.286 0.714 39 H 0.139 0.861 40 H 0.165 0.835 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.961 -0.976 34.227 34.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 H 0.103 0.897 4 N -0.360 5.360 5 C 0.341 3.659 6 O -0.477 6.477 7 C -0.260 4.260 8 C -0.009 4.009 9 C -0.161 4.161 10 C -0.064 4.064 11 C -0.262 4.262 12 C 0.086 3.914 13 O -0.139 6.139 14 C -0.480 4.480 15 H 0.101 0.899 16 C -0.187 4.187 17 N -0.556 5.556 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.192 1.192 21 H -0.184 1.184 22 C -0.213 4.213 23 C -0.058 4.058 24 C 0.015 3.985 25 H 0.095 0.905 26 C -0.188 4.188 27 C -0.187 4.187 28 C -0.036 4.036 29 O -0.308 6.308 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.251 0.749 34 H 0.171 0.829 35 H 0.141 0.859 36 H 0.157 0.843 37 H 0.132 0.868 38 H 0.096 0.904 39 H 0.157 0.843 40 H 0.182 0.818 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.096 -0.520 33.772 34.514 hybrid contribution 0.343 -0.334 -0.865 0.989 sum -6.753 -0.854 32.908 33.604 Atomic orbital electron populations 1.22019 0.94660 1.02539 1.01822 1.21213 0.95094 0.96458 0.83441 0.89738 1.45835 1.66607 1.14665 1.08941 1.18560 0.76846 0.86100 0.84426 1.90772 1.53189 1.17718 1.86000 1.22801 1.09121 1.01960 0.92119 1.22164 0.89298 0.98897 0.90542 1.18821 1.09171 0.94637 0.93449 1.21288 0.94265 0.99827 0.90989 1.21224 1.09661 0.94961 1.00375 1.19935 0.91937 0.91852 0.87711 1.83463 1.73976 1.41259 1.15238 1.20763 1.48498 0.95828 0.82952 0.89854 1.25325 0.95869 1.04516 0.92968 1.69704 1.47476 1.39269 0.99175 0.85206 0.79031 0.77676 0.78769 1.18991 1.19235 1.18382 1.20488 1.09117 1.01144 0.90517 1.21349 0.93676 0.93076 0.97700 1.22998 0.97388 0.83788 0.94364 0.90493 1.23002 1.01652 0.99356 0.94785 1.23120 1.00696 0.93889 1.01014 1.23765 1.01407 0.98020 0.80445 1.88898 1.82596 1.33334 1.25931 0.91759 0.90202 0.94421 0.74896 0.82897 0.85949 0.84332 0.86829 0.90383 0.84327 0.81766 0.89046 0.89740 0.88476 0.90441 0.91298 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.07 71.98 0.65 -1.88 16 2 C 0.14 2.36 2.32 44.99 0.10 2.46 16 3 H 0.08 1.63 7.58 -2.39 -0.02 1.61 16 4 N -0.71 -13.10 5.06 -446.91 -2.26 -15.36 16 5 C 0.55 13.65 7.70 86.33 0.66 14.31 16 6 O -0.59 -19.27 15.89 -4.42 -0.07 -19.34 16 7 C -0.24 -5.42 9.41 23.62 0.22 -5.19 16 8 C 0.01 0.29 9.45 23.82 0.23 0.52 16 9 C -0.16 -4.87 5.87 -20.13 -0.12 -4.99 16 10 C -0.05 -1.58 9.78 22.55 0.22 -1.36 16 11 C -0.24 -10.44 9.14 22.34 0.20 -10.24 16 12 C 0.14 6.13 6.66 22.72 0.15 6.28 16 13 O -0.23 -12.24 8.57 -20.40 -0.17 -12.41 16 14 C -0.40 -23.27 9.94 67.93 0.68 -22.59 16 15 H 0.08 5.03 5.41 -2.91 -0.02 5.02 16 16 C 0.01 0.72 5.49 84.86 0.47 1.19 16 17 N -0.92 -53.72 13.96 21.62 0.30 -53.42 16 18 Si 0.97 44.09 28.62 68.60 1.96 46.06 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 22 C -0.19 -6.91 9.97 22.34 0.22 -6.68 16 23 C -0.04 -1.16 9.40 22.55 0.21 -0.95 16 24 C 0.07 0.86 3.24 30.97 0.10 0.96 16 25 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 26 C -0.15 -1.14 6.16 31.58 0.19 -0.94 16 27 C -0.15 -0.86 7.16 31.89 0.23 -0.63 16 28 C 0.04 0.31 7.72 72.67 0.56 0.87 16 29 O -0.39 -5.19 10.11 -148.98 -1.51 -6.70 16 30 H 0.06 1.09 7.54 -2.39 -0.02 1.08 16 31 H 0.08 1.01 6.72 -2.39 -0.02 0.99 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.41 5.99 8.44 -92.71 -0.78 5.21 16 34 H 0.15 2.55 6.06 -2.91 -0.02 2.53 16 35 H 0.12 3.39 7.52 -2.91 -0.02 3.37 16 36 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.11 5.36 5.62 -2.91 -0.02 5.34 16 38 H 0.29 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.17 3.27 6.16 -2.91 -0.02 3.25 16 41 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.08 0.65 6.58 -2.39 -0.02 0.63 16 43 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -70.11 381.07 3.47 -66.65 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.23 Total: 23.39 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 4.99 Total: -28.86 kcal Atomic # 7 Polarization: -66.82 SS G_CDS: -1.96 Total: -68.78 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -1.75 Total: -38.45 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.96 Total: 46.06 kcal Total: -70.11 3.47 -66.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027859597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.393 kcal (2) G-P(sol) polarization free energy of solvation -70.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds