Wall clock time and date at job start Sat Apr 11 2020 02:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00478 * 2 1 4 4 H 1.48493 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47295 * 300.00125 * 3 2 1 6 6 H 1.48506 * 109.47014 * 59.99633 * 3 2 1 7 7 C 1.38814 * 119.99452 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99981 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00035 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99764 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46762 * 179.97438 * 10 9 7 12 12 C 1.38235 * 119.99885 * 90.00224 * 11 10 9 13 13 C 1.38232 * 119.99615 * 179.97438 * 12 11 10 14 14 C 1.38233 * 120.00473 * 0.02635 * 13 12 11 15 15 C 1.50699 * 119.99932 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47747 * 89.99905 * 15 14 13 17 17 C 1.34771 * 120.00225 * 180.02562 * 16 15 14 18 18 O 1.21284 * 119.99883 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00318 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47492 * 179.97438 * 19 17 16 21 21 H 1.08994 * 110.28196 * 53.02327 * 20 19 17 22 22 C 1.54479 * 110.24544 * 174.99871 * 20 19 17 23 23 C 1.54623 * 101.76448 * 144.41635 * 22 20 19 24 24 C 1.51286 * 104.19583 * 335.20040 * 23 22 20 25 25 O 1.21283 * 124.94068 * 196.22850 * 24 23 22 26 26 N 1.34417 * 110.11517 * 16.49747 * 24 23 22 27 27 C 1.38234 * 119.99729 * 0.24799 * 14 13 12 28 28 C 1.38230 * 119.99963 * 359.49546 * 27 14 13 29 29 H 0.97007 * 119.99507 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00383 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.47095 * 60.00022 * 10 9 7 32 32 H 1.08997 * 109.47021 * 299.99964 * 10 9 7 33 33 H 1.07997 * 120.00029 * 0.02562 * 12 11 10 34 34 H 1.08008 * 119.99760 * 179.97438 * 13 12 11 35 35 H 1.09000 * 109.47391 * 329.98923 * 15 14 13 36 36 H 1.09011 * 109.46764 * 210.00012 * 15 14 13 37 37 H 0.97001 * 119.99602 * 359.97438 * 16 15 14 38 38 H 1.09005 * 109.47263 * 59.99549 * 19 17 16 39 39 H 1.08998 * 109.46827 * 300.00134 * 19 17 16 40 40 H 1.09006 * 110.97141 * 26.29683 * 22 20 19 41 41 H 1.09002 * 110.97085 * 262.53716 * 22 20 19 42 42 H 1.09000 * 110.48720 * 216.52574 * 23 22 20 43 43 H 1.09003 * 110.60041 * 93.93250 * 23 22 20 44 44 H 0.96995 * 124.34982 * 180.16393 * 26 24 23 45 45 H 1.07997 * 119.99962 * 179.72915 * 27 14 13 46 46 H 1.07999 * 120.00200 * 180.25133 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0784 -4.8022 0.0012 12 6 0.6288 -5.3278 -1.1957 13 6 -0.2692 -6.3787 -1.1951 14 6 -0.7180 -6.9037 0.0023 15 6 -1.6974 -8.0491 0.0029 16 7 -0.9652 -9.3179 0.0029 17 6 -1.6392 -10.4849 0.0029 18 8 -2.8521 -10.4847 0.0033 19 6 -0.8861 -11.7902 0.0023 20 6 -1.8805 -12.9530 0.0030 21 1 -2.5940 -12.8404 -0.8132 22 6 -1.1308 -14.2976 -0.1239 23 6 -1.9920 -15.2239 0.7656 24 6 -2.6675 -14.2818 1.7376 25 8 -3.2054 -14.6185 2.7712 26 7 -2.5901 -13.0181 1.2860 27 6 -0.2727 -6.3744 1.1992 28 6 0.6294 -5.3270 1.1986 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3881 -0.0002 31 1 2.6845 -3.7147 0.8906 32 1 2.6845 -3.7146 -0.8894 33 1 0.9798 -4.9179 -2.1312 34 1 -0.6208 -6.7891 -2.1302 35 1 -2.3245 -7.9914 -0.8868 36 1 -2.3238 -7.9910 0.8932 37 1 0.0048 -9.3181 0.0022 38 1 -0.2590 -11.8483 0.8921 39 1 -0.2597 -11.8478 -0.8879 40 1 -0.1157 -14.2166 0.2652 41 1 -1.1243 -14.6447 -1.1572 42 1 -1.3612 -15.9348 1.2993 43 1 -2.7346 -15.7499 0.1655 44 1 -2.9543 -12.2480 1.7498 45 1 -0.6267 -6.7817 2.1347 46 1 0.9804 -4.9161 2.1337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319000310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:50:59 Heat of formation + Delta-G solvation = -46.287034 kcal Electronic energy + Delta-G solvation = -26323.031204 eV Core-core repulsion = 22405.026365 eV Total energy + Delta-G solvation = -3918.004839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99587 -39.91194 -39.12652 -36.95881 -35.61894 -34.41195 -32.37096 -31.70786 -31.53491 -30.79381 -30.12218 -27.35087 -25.68882 -24.23341 -22.56607 -22.47310 -21.92574 -21.03874 -20.72674 -20.46139 -17.83558 -17.56070 -17.31537 -16.95018 -16.36987 -15.92834 -15.52191 -15.30970 -14.97339 -14.86741 -14.60231 -14.16167 -14.14166 -13.86019 -13.43280 -13.35541 -13.28726 -13.20773 -13.11117 -12.98315 -12.43124 -12.31178 -12.07010 -11.98845 -11.90423 -11.58170 -11.13346 -10.92106 -10.80086 -10.65006 -10.29562 -10.20982 -10.07614 -9.82714 -9.49934 -9.41072 -8.95722 -8.76531 -8.51405 -6.99548 -5.81440 -3.11620 1.31484 1.56610 2.23462 2.26230 2.88334 3.00097 3.39968 3.45383 3.47935 3.80025 3.89521 3.94711 4.13770 4.34639 4.56191 4.56714 4.58244 4.70125 4.76054 4.87357 4.91236 5.11187 5.14970 5.18411 5.24852 5.30965 5.31186 5.49913 5.51813 5.52216 5.67036 5.77773 6.04133 6.08594 6.09549 6.13990 6.42019 6.45070 6.52221 6.55701 6.61512 6.71290 7.03353 7.11829 7.15858 7.64713 7.82002 7.92005 8.36119 9.47897 10.03394 10.39007 11.40995 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.038970 B = 0.001565 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.325895 B =17887.654598 C =18011.433669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.727 5.727 10 C 0.184 3.816 11 C -0.063 4.063 12 C -0.106 4.106 13 C -0.103 4.103 14 C -0.126 4.126 15 C 0.165 3.835 16 N -0.722 5.722 17 C 0.508 3.492 18 O -0.541 6.541 19 C -0.154 4.154 20 C 0.146 3.854 21 H 0.092 0.908 22 C -0.130 4.130 23 C -0.157 4.157 24 C 0.516 3.484 25 O -0.539 6.539 26 N -0.719 5.719 27 C -0.103 4.103 28 C -0.106 4.106 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.403 0.597 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.414 0.586 45 H 0.118 0.882 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.523 -29.910 -3.084 30.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.371 5.371 10 C 0.057 3.943 11 C -0.064 4.064 12 C -0.125 4.125 13 C -0.122 4.122 14 C -0.127 4.127 15 C 0.043 3.957 16 N -0.373 5.373 17 C 0.294 3.706 18 O -0.419 6.419 19 C -0.194 4.194 20 C 0.040 3.960 21 H 0.110 0.890 22 C -0.168 4.168 23 C -0.197 4.197 24 C 0.302 3.698 25 O -0.416 6.416 26 N -0.375 5.375 27 C -0.122 4.122 28 C -0.125 4.125 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.238 0.762 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.254 0.746 45 H 0.136 0.864 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.462 -30.044 -2.599 30.160 hybrid contribution 0.469 1.596 0.099 1.666 sum 0.007 -28.448 -2.500 28.558 Atomic orbital electron populations 1.69689 1.05150 1.25646 1.57393 1.24771 0.95543 0.97755 1.02771 0.86094 0.78760 0.83943 0.77231 1.20496 1.21802 1.21806 1.19287 0.91105 0.83934 1.43145 0.90980 1.42341 1.05944 0.99283 1.89545 1.19715 0.91876 0.83960 0.98777 1.20406 0.97130 0.96031 0.92788 1.21130 0.97263 0.95837 0.98252 1.20983 0.97409 0.96778 0.97034 1.19659 1.00445 0.98748 0.93842 1.20174 0.92639 0.79945 1.02987 1.46180 1.10683 1.05506 1.74976 1.20645 0.88313 0.85502 0.76105 1.90745 1.13833 1.87680 1.49601 1.22119 0.99436 0.92020 1.05853 1.21430 0.93345 0.93912 0.87272 0.89018 1.22723 0.99345 0.93096 1.01616 1.22353 1.00685 0.98496 0.98146 1.20911 0.79046 0.84117 0.85769 1.90769 1.45757 1.79943 1.25139 1.46352 1.58313 1.09518 1.23299 1.20988 0.97358 0.96781 0.97066 1.21134 0.97204 0.95869 0.98263 0.93476 0.78055 0.95373 0.95368 0.85773 0.86335 0.90655 0.90705 0.76235 0.87918 0.86996 0.89537 0.88739 0.87966 0.87684 0.74591 0.86358 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.24 5.59 -61.08 -0.34 -18.58 16 10 C 0.18 3.61 6.38 -5.19 -0.03 3.58 16 11 C -0.06 -1.03 5.25 -104.62 -0.55 -1.58 16 12 C -0.11 -1.54 9.70 -39.58 -0.38 -1.93 16 13 C -0.10 -1.24 9.70 -39.59 -0.38 -1.63 16 14 C -0.13 -1.41 5.25 -104.63 -0.55 -1.96 16 15 C 0.17 1.58 5.80 -5.20 -0.03 1.55 16 16 N -0.72 -5.25 5.55 -61.47 -0.34 -5.59 16 17 C 0.51 3.90 7.66 -10.99 -0.08 3.82 16 18 O -0.54 -6.23 15.03 5.55 0.08 -6.15 16 19 C -0.15 -0.58 5.31 -27.88 -0.15 -0.73 16 20 C 0.15 0.71 2.99 -67.01 -0.20 0.51 16 21 H 0.09 0.52 7.91 -51.93 -0.41 0.11 16 22 C -0.13 -0.32 6.69 -25.10 -0.17 -0.48 16 23 C -0.16 -0.73 6.86 -26.74 -0.18 -0.92 16 24 C 0.52 4.79 8.43 -10.86 -0.09 4.70 16 25 O -0.54 -7.60 18.03 5.55 0.10 -7.50 16 26 N -0.72 -5.66 5.63 -52.76 -0.30 -5.96 16 27 C -0.10 -1.26 9.70 -39.59 -0.38 -1.64 16 28 C -0.11 -1.55 9.70 -39.58 -0.38 -1.94 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.39 10.36 7.66 -40.82 -0.31 10.05 16 31 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 36 H 0.07 0.77 8.08 -51.92 -0.42 0.35 16 37 H 0.40 2.18 8.46 -40.82 -0.35 1.83 16 38 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.11 0.15 8.14 -51.93 -0.42 -0.28 16 40 H 0.09 0.12 7.91 -51.93 -0.41 -0.29 16 41 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 42 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.41 3.81 8.12 -40.82 -0.33 3.47 16 45 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 46 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -35.68 390.17 -9.88 -45.56 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -6.84 Total: 8.55 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -3.82 Total: -5.98 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.26 Total: -57.48 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.18 Total: -13.65 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.68 -9.88 -45.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319000310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.731 kcal (2) G-P(sol) polarization free energy of solvation -35.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds