Wall clock time and date at job start Sat Apr 11 2020 02:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47000 * 269.99990 * 3 2 1 5 5 H 1.48502 * 109.47031 * 29.99968 * 3 2 1 6 6 H 1.48497 * 109.47219 * 150.00118 * 3 2 1 7 7 C 1.38948 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00141 * 359.97438 * 7 2 1 9 9 N 1.37098 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00307 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99470 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00191 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47161 * 181.33819 * 12 10 9 14 14 C 1.46903 * 110.99884 * 162.31631 * 13 12 10 15 15 C 1.53001 * 109.46622 * 189.99539 * 14 13 12 16 16 N 1.46503 * 109.46579 * 179.97438 * 15 14 13 17 17 C 1.34785 * 119.99554 * 179.97438 * 16 15 14 18 18 O 1.21550 * 119.99824 * 0.02562 * 17 16 15 19 19 C 1.47841 * 119.99567 * 179.97438 * 17 16 15 20 20 C 1.39577 * 120.14687 * 359.73193 * 19 17 16 21 21 C 1.37961 * 119.85087 * 179.78373 * 20 19 17 22 22 C 1.38356 * 120.14548 * 0.49138 * 21 20 19 23 23 C 1.38357 * 120.29494 * 359.73799 * 22 21 20 24 24 C 1.37964 * 120.14511 * 0.02562 * 23 22 21 25 25 C 1.46904 * 110.99720 * 286.26790 * 13 12 10 26 26 C 1.53006 * 117.49794 * 3.78524 * 25 13 12 27 27 C 1.53001 * 117.49806 * 295.12673 * 25 13 12 28 28 H 0.97000 * 119.99807 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99792 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47159 * 61.33540 * 12 10 9 31 31 H 1.08999 * 109.47311 * 301.33601 * 12 10 9 32 32 H 1.08999 * 109.46896 * 70.00187 * 14 13 12 33 33 H 1.08995 * 109.47111 * 310.00058 * 14 13 12 34 34 H 1.09007 * 109.46871 * 60.00331 * 15 14 13 35 35 H 1.08993 * 109.47291 * 300.00141 * 15 14 13 36 36 H 0.96996 * 120.00684 * 0.28048 * 16 15 14 37 37 H 1.07992 * 120.07439 * 359.97438 * 20 19 17 38 38 H 1.07997 * 119.92694 * 180.22635 * 21 20 19 39 39 H 1.08000 * 119.85692 * 179.71883 * 22 21 20 40 40 H 1.08005 * 119.93364 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.07710 * 179.97438 * 24 23 22 42 42 H 1.08995 * 115.54897 * 149.45425 * 25 13 12 43 43 H 1.08998 * 117.49678 * 0.02562 * 26 25 13 44 44 H 1.08998 * 117.49184 * 145.01824 * 26 25 13 45 45 H 1.08999 * 117.49614 * 214.97906 * 27 25 13 46 46 H 1.08999 * 117.50346 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5608 -2.3705 -0.0022 13 7 6.0504 -3.7551 -0.0343 14 6 7.4575 -3.8063 -0.4533 15 6 7.8589 -5.2592 -0.7155 16 7 9.2620 -5.3102 -1.1339 17 6 9.8372 -6.4951 -1.4202 18 8 9.1916 -7.5211 -1.3316 19 6 11.2529 -6.5464 -1.8429 20 6 11.9951 -5.3694 -1.9521 21 6 13.3170 -5.4248 -2.3428 22 6 13.9044 -6.6427 -2.6361 23 6 13.1730 -7.8128 -2.5345 24 6 11.8516 -7.7718 -2.1402 25 6 5.8647 -4.4095 1.2677 26 6 5.1450 -3.6165 2.3606 27 6 6.6540 -3.8556 2.4557 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3633 -0.0007 30 1 5.9248 -1.8771 0.8990 31 1 5.9234 -1.8364 -0.8805 32 1 8.0865 -3.3921 0.3347 33 1 7.5865 -3.2234 -1.3652 34 1 7.2299 -5.6734 -1.5035 35 1 7.7299 -5.8420 0.1965 36 1 9.7783 -4.4918 -1.2007 37 1 11.5364 -4.4177 -1.7281 38 1 13.8934 -4.5151 -2.4241 39 1 14.9383 -6.6802 -2.9459 40 1 13.6375 -8.7603 -2.7645 41 1 11.2816 -8.6858 -2.0617 42 1 5.6963 -5.4858 1.2332 43 1 4.8090 -2.6095 2.1133 44 1 4.5035 -4.1714 3.0452 45 1 7.0046 -4.5676 3.2028 46 1 7.3114 -3.0060 2.2711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691199607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:51:22 Heat of formation + Delta-G solvation = 8.212564 kcal Electronic energy + Delta-G solvation = -27236.744808 eV Core-core repulsion = 23321.103249 eV Total energy + Delta-G solvation = -3915.641559 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.49222 -39.67357 -38.55660 -37.46836 -35.41134 -33.91830 -33.36148 -31.79760 -31.60480 -31.36078 -29.43812 -26.65871 -24.40841 -24.02000 -23.23913 -22.66642 -21.94266 -20.77098 -20.05968 -19.17157 -18.34701 -18.11725 -17.04052 -16.60416 -16.27561 -15.90464 -15.62952 -15.42594 -14.96276 -14.87323 -14.62177 -14.16255 -14.06681 -13.94314 -13.65045 -13.42257 -13.25705 -12.99737 -12.71284 -12.40110 -12.25145 -12.09375 -11.90937 -11.66952 -11.54428 -11.30269 -11.12972 -11.05848 -10.60448 -10.50891 -10.22493 -9.97480 -9.94748 -9.52327 -9.49370 -9.44019 -9.19785 -8.61117 -8.15454 -8.01341 -6.29040 -3.80246 0.45025 0.91325 2.58451 2.78107 3.01449 3.06388 3.14813 3.49928 3.72241 3.87335 4.00755 4.11011 4.32875 4.35149 4.48058 4.63034 4.70173 4.79117 4.91690 4.96395 5.03532 5.05115 5.09621 5.12701 5.23035 5.33177 5.35075 5.49671 5.52294 5.64049 5.72019 5.80535 5.85875 5.87493 5.90843 5.97036 6.00237 6.11455 6.18578 6.24341 6.38959 6.42751 6.98794 7.14955 7.22325 7.60073 7.95553 8.16328 8.62670 8.98100 9.44447 9.86582 10.84269 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.002045 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.561584 B =13691.790488 C =14169.034982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.040 3.960 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.301 4.301 8 H 0.120 0.880 9 N -0.596 5.596 10 C 0.456 3.544 11 O -0.547 6.547 12 C 0.036 3.964 13 N -0.479 5.479 14 C 0.047 3.953 15 C 0.124 3.876 16 N -0.724 5.724 17 C 0.557 3.443 18 O -0.533 6.533 19 C -0.132 4.132 20 C -0.087 4.087 21 C -0.128 4.128 22 C -0.097 4.097 23 C -0.128 4.128 24 C -0.061 4.061 25 C 0.041 3.959 26 C -0.166 4.166 27 C -0.227 4.227 28 H 0.273 0.727 29 H 0.368 0.632 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.398 0.602 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.850 -6.604 -1.958 30.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.430 4.430 8 H 0.137 0.863 9 N -0.236 5.236 10 C 0.241 3.759 11 O -0.427 6.427 12 C -0.096 4.096 13 N -0.202 5.202 14 C -0.082 4.082 15 C 0.001 3.999 16 N -0.376 5.376 17 C 0.344 3.656 18 O -0.410 6.410 19 C -0.135 4.135 20 C -0.106 4.106 21 C -0.146 4.146 22 C -0.115 4.115 23 C -0.146 4.146 24 C -0.079 4.079 25 C -0.068 4.068 26 C -0.204 4.204 27 C -0.266 4.266 28 H 0.083 0.917 29 H 0.201 0.799 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.233 0.767 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 28.424 -8.199 -2.258 29.669 hybrid contribution 1.278 2.459 0.590 2.833 sum 29.702 -5.741 -1.669 30.298 Atomic orbital electron populations 1.69621 1.05598 1.27376 1.49716 1.25024 0.95468 0.97874 0.97871 0.86691 0.79703 0.84241 0.78822 1.19678 1.20261 1.19644 1.19408 0.79168 0.96573 1.47839 0.86270 1.42210 1.07500 1.06004 1.67936 1.19493 0.87805 0.84663 0.83962 1.90588 1.69019 1.30720 1.52392 1.22045 0.96374 0.89431 1.01721 1.61443 1.15890 1.16015 1.26838 1.22257 0.89246 0.96148 1.00520 1.21293 0.80213 0.96883 1.01524 1.45837 1.13429 1.08861 1.69491 1.18244 0.86546 0.83539 0.77318 1.90801 1.64381 1.33492 1.52324 1.20003 0.93876 0.94719 1.04947 1.21333 0.94488 0.97241 0.97546 1.21129 0.94914 0.98317 1.00246 1.21400 1.00063 0.92575 0.97468 1.21201 0.94148 0.98815 1.00448 1.21339 0.94636 0.97522 0.94449 1.22648 1.03074 0.98508 0.82562 1.23266 0.93280 1.02566 1.01238 1.23484 0.95424 1.04175 1.03560 0.91686 0.79916 0.92652 0.89295 0.94049 0.90136 0.90004 0.90846 0.76741 0.85603 0.85343 0.85559 0.85251 0.84542 0.85842 0.87998 0.88386 0.88788 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.75 13.96 55.50 0.77 -24.97 16 2 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 3 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 7 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.60 -13.89 5.09 -10.96 -0.06 -13.95 16 10 C 0.46 10.05 5.84 -10.99 -0.06 9.98 16 11 O -0.55 -14.36 14.79 5.55 0.08 -14.28 16 12 C 0.04 0.57 5.00 -4.98 -0.02 0.55 16 13 N -0.48 -7.25 4.34 -228.08 -0.99 -8.24 16 14 C 0.05 0.51 4.96 -3.82 -0.02 0.49 16 15 C 0.12 1.42 5.67 -4.04 -0.02 1.40 16 16 N -0.72 -6.84 5.51 -61.25 -0.34 -7.18 16 17 C 0.56 6.48 7.77 -12.33 -0.10 6.39 16 18 O -0.53 -8.32 16.35 5.32 0.09 -8.24 16 19 C -0.13 -1.22 5.87 -104.97 -0.62 -1.84 16 20 C -0.09 -0.58 9.54 -39.18 -0.37 -0.96 16 21 C -0.13 -0.72 10.03 -39.64 -0.40 -1.12 16 22 C -0.10 -0.54 10.04 -39.49 -0.40 -0.94 16 23 C -0.13 -0.83 10.03 -39.64 -0.40 -1.23 16 24 C -0.06 -0.53 9.60 -39.18 -0.38 -0.91 16 25 C 0.04 0.61 4.55 -67.71 -0.31 0.30 16 26 C -0.17 -2.63 8.48 -26.69 -0.23 -2.85 16 27 C -0.23 -2.81 9.27 -26.69 -0.25 -3.05 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 30 H 0.06 0.79 5.99 -51.93 -0.31 0.48 16 31 H 0.09 1.21 7.77 -51.93 -0.40 0.81 16 32 H 0.04 0.39 6.87 -51.93 -0.36 0.03 16 33 H 0.08 0.77 7.84 -51.93 -0.41 0.36 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.92 7.30 -51.93 -0.38 0.54 16 36 H 0.40 2.51 6.51 -40.82 -0.27 2.25 16 37 H 0.13 0.54 6.41 -52.49 -0.34 0.20 16 38 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 40 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 41 H 0.14 1.24 7.65 -52.49 -0.40 0.84 16 42 H 0.12 1.87 8.03 -51.93 -0.42 1.45 16 43 H 0.10 1.81 4.91 -51.93 -0.26 1.55 16 44 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.09 0.99 7.15 -51.93 -0.37 0.62 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -35.17 377.32 -9.52 -44.69 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -6.23 Total: 13.34 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -3.81 Total: -1.35 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.61 Total: -54.33 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.17 Total: -22.52 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.17 -9.52 -44.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691199607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.901 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds