Wall clock time and date at job start Sat Apr 11 2020 02:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47000 * 269.99990 * 3 2 1 5 5 H 1.48502 * 109.47031 * 29.99968 * 3 2 1 6 6 H 1.48497 * 109.47219 * 150.00118 * 3 2 1 7 7 C 1.38948 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00141 * 359.97438 * 7 2 1 9 9 N 1.37098 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00307 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99470 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00191 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47161 * 181.33819 * 12 10 9 14 14 C 1.46903 * 110.99884 * 162.31631 * 13 12 10 15 15 C 1.53001 * 109.46622 * 189.99539 * 14 13 12 16 16 N 1.46503 * 109.46579 * 179.97438 * 15 14 13 17 17 C 1.34785 * 119.99554 * 179.97438 * 16 15 14 18 18 O 1.21550 * 119.99824 * 0.02562 * 17 16 15 19 19 C 1.47841 * 119.99567 * 179.97438 * 17 16 15 20 20 C 1.39577 * 120.14687 * 359.73193 * 19 17 16 21 21 C 1.37961 * 119.85087 * 179.78373 * 20 19 17 22 22 C 1.38356 * 120.14548 * 0.49138 * 21 20 19 23 23 C 1.38357 * 120.29494 * 359.73799 * 22 21 20 24 24 C 1.37964 * 120.14511 * 0.02562 * 23 22 21 25 25 C 1.46904 * 110.99720 * 286.26790 * 13 12 10 26 26 C 1.53006 * 117.49794 * 3.78524 * 25 13 12 27 27 C 1.53001 * 117.49806 * 295.12673 * 25 13 12 28 28 H 0.97000 * 119.99807 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99792 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47159 * 61.33540 * 12 10 9 31 31 H 1.08999 * 109.47311 * 301.33601 * 12 10 9 32 32 H 1.08999 * 109.46896 * 70.00187 * 14 13 12 33 33 H 1.08995 * 109.47111 * 310.00058 * 14 13 12 34 34 H 1.09007 * 109.46871 * 60.00331 * 15 14 13 35 35 H 1.08993 * 109.47291 * 300.00141 * 15 14 13 36 36 H 0.96996 * 120.00684 * 0.28048 * 16 15 14 37 37 H 1.07992 * 120.07439 * 359.97438 * 20 19 17 38 38 H 1.07997 * 119.92694 * 180.22635 * 21 20 19 39 39 H 1.08000 * 119.85692 * 179.71883 * 22 21 20 40 40 H 1.08005 * 119.93364 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.07710 * 179.97438 * 24 23 22 42 42 H 1.08995 * 115.54897 * 149.45425 * 25 13 12 43 43 H 1.08998 * 117.49678 * 0.02562 * 26 25 13 44 44 H 1.08998 * 117.49184 * 145.01824 * 26 25 13 45 45 H 1.08999 * 117.49614 * 214.97906 * 27 25 13 46 46 H 1.08999 * 117.50346 * 359.97438 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0538 -2.3705 -0.0011 11 8 3.4473 -3.4209 -0.0011 12 6 5.5608 -2.3705 -0.0022 13 7 6.0504 -3.7551 -0.0343 14 6 7.4575 -3.8063 -0.4533 15 6 7.8589 -5.2592 -0.7155 16 7 9.2620 -5.3102 -1.1339 17 6 9.8372 -6.4951 -1.4202 18 8 9.1916 -7.5211 -1.3316 19 6 11.2529 -6.5464 -1.8429 20 6 11.9951 -5.3694 -1.9521 21 6 13.3170 -5.4248 -2.3428 22 6 13.9044 -6.6427 -2.6361 23 6 13.1730 -7.8128 -2.5345 24 6 11.8516 -7.7718 -2.1402 25 6 5.8647 -4.4095 1.2677 26 6 5.1450 -3.6165 2.3606 27 6 6.6540 -3.8556 2.4557 28 1 -0.4850 0.8401 -0.0004 29 1 3.8648 -0.3633 -0.0007 30 1 5.9248 -1.8771 0.8990 31 1 5.9234 -1.8364 -0.8805 32 1 8.0865 -3.3921 0.3347 33 1 7.5865 -3.2234 -1.3652 34 1 7.2299 -5.6734 -1.5035 35 1 7.7299 -5.8420 0.1965 36 1 9.7783 -4.4918 -1.2007 37 1 11.5364 -4.4177 -1.7281 38 1 13.8934 -4.5151 -2.4241 39 1 14.9383 -6.6802 -2.9459 40 1 13.6375 -8.7603 -2.7645 41 1 11.2816 -8.6858 -2.0617 42 1 5.6963 -5.4858 1.2332 43 1 4.8090 -2.6095 2.1133 44 1 4.5035 -4.1714 3.0452 45 1 7.0046 -4.5676 3.2028 46 1 7.3114 -3.0060 2.2711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691199607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:51:21 Heat of formation + Delta-G solvation = -18.918143 kcal Electronic energy + Delta-G solvation = -27237.921284 eV Core-core repulsion = 23321.103249 eV Total energy + Delta-G solvation = -3916.818035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32539 -40.95131 -39.31934 -38.96606 -36.38476 -35.89103 -34.44004 -33.69228 -32.42504 -31.85328 -30.52068 -28.02967 -25.94133 -25.00054 -24.00605 -23.30118 -23.04068 -21.62447 -21.42157 -20.87776 -19.86311 -19.04183 -18.14270 -17.66970 -17.38900 -16.95518 -16.69423 -16.57205 -16.20047 -15.65810 -15.50053 -15.41029 -15.23273 -14.95382 -14.88191 -14.58075 -14.42887 -14.21335 -13.89819 -13.65723 -13.47425 -13.21869 -13.04710 -12.73946 -12.59748 -12.39095 -12.29514 -12.14151 -11.99517 -11.96261 -11.61336 -11.46996 -11.15880 -11.04377 -10.36645 -10.27864 -10.19163 -9.93034 -9.85414 -9.19207 -8.37605 -5.97807 -0.12587 0.43671 1.30492 1.37306 1.45474 1.84603 1.91512 2.03305 2.25409 2.70484 2.87548 2.92493 3.16074 3.23969 3.69402 3.71584 3.90199 3.95112 3.97051 4.03744 4.05379 4.12823 4.20662 4.27259 4.35655 4.43415 4.48900 4.52332 4.56130 4.71720 4.86241 4.89223 4.96016 4.97793 5.08013 5.14739 5.15931 5.29906 5.37359 5.47634 5.53451 5.56135 5.88078 5.97037 6.01733 6.10042 6.48127 6.64349 6.94166 7.15261 7.45323 8.04977 8.80392 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022349 B = 0.002045 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.561584 B =13691.790488 C =14169.034982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.019 4.019 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.229 1.229 7 C -0.321 4.321 8 H 0.052 0.948 9 N -0.597 5.597 10 C 0.456 3.544 11 O -0.599 6.599 12 C 0.049 3.951 13 N -0.507 5.507 14 C 0.055 3.945 15 C 0.132 3.868 16 N -0.706 5.706 17 C 0.552 3.448 18 O -0.587 6.587 19 C -0.156 4.156 20 C -0.084 4.084 21 C -0.128 4.128 22 C -0.092 4.092 23 C -0.133 4.133 24 C -0.084 4.084 25 C 0.027 3.973 26 C -0.197 4.197 27 C -0.181 4.181 28 H 0.277 0.723 29 H 0.388 0.612 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.417 0.583 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.465 -3.175 -2.162 35.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.217 4.217 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.153 1.153 7 C -0.451 4.451 8 H 0.071 0.929 9 N -0.240 5.240 10 C 0.244 3.756 11 O -0.481 6.481 12 C -0.082 4.082 13 N -0.230 5.230 14 C -0.072 4.072 15 C 0.007 3.993 16 N -0.359 5.359 17 C 0.341 3.659 18 O -0.468 6.468 19 C -0.159 4.159 20 C -0.103 4.103 21 C -0.145 4.145 22 C -0.110 4.110 23 C -0.151 4.151 24 C -0.103 4.103 25 C -0.082 4.082 26 C -0.234 4.234 27 C -0.220 4.220 28 H 0.087 0.913 29 H 0.223 0.777 30 H 0.102 0.898 31 H 0.144 0.856 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.255 0.745 37 H 0.169 0.831 38 H 0.177 0.823 39 H 0.173 0.827 40 H 0.164 0.836 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.129 0.871 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 34.099 -4.745 -2.463 34.516 hybrid contribution -0.473 1.206 0.625 1.438 sum 33.626 -3.539 -1.838 33.862 Atomic orbital electron populations 1.69819 1.08191 1.29062 1.50918 1.26122 0.96461 1.02747 0.96394 0.85362 0.79501 0.76724 0.79890 1.18170 1.20326 1.15260 1.18950 0.81554 0.94709 1.49848 0.92941 1.42019 1.05671 1.07513 1.68777 1.20782 0.90708 0.83311 0.80814 1.90571 1.71076 1.32679 1.53803 1.21924 0.90848 0.90650 1.04733 1.61255 1.18943 1.15649 1.27152 1.22274 0.87034 0.95539 1.02364 1.21051 0.80891 0.97481 0.99832 1.45610 1.12617 1.09197 1.68438 1.18758 0.87512 0.83214 0.76434 1.90769 1.65827 1.35383 1.54830 1.19915 0.92685 0.96104 1.07193 1.21615 0.94922 0.97085 0.96635 1.21545 0.94559 0.99534 0.98905 1.21818 1.01259 0.92076 0.95874 1.21434 0.93211 1.00415 1.00020 1.21382 0.95853 0.97032 0.96025 1.22584 1.04368 0.97807 0.83441 1.23187 0.96134 1.01538 1.02541 1.23526 0.92817 1.04279 1.01360 0.91334 0.77667 0.89761 0.85648 0.91037 0.87869 0.92955 0.92349 0.74477 0.83054 0.82310 0.82709 0.83558 0.86469 0.87417 0.89881 0.89816 0.87122 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.09 13.96 21.66 0.30 -56.79 16 2 C -0.02 -1.08 5.50 84.93 0.47 -0.61 16 3 Si 0.97 38.51 27.74 68.60 1.90 40.41 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.23 -7.55 6.52 99.48 0.65 -6.91 16 7 C -0.32 -18.80 10.16 84.04 0.85 -17.95 16 8 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 9 N -0.60 -27.68 5.09 -306.99 -1.56 -29.25 16 10 C 0.46 20.17 5.84 87.66 0.51 20.68 16 11 O -0.60 -33.06 14.79 -3.07 -0.05 -33.11 16 12 C 0.05 1.43 5.00 85.56 0.43 1.85 16 13 N -0.51 -14.41 4.34 -875.51 -3.80 -18.21 16 14 C 0.06 1.00 4.96 86.30 0.43 1.43 16 15 C 0.13 2.91 5.67 86.38 0.49 3.40 16 16 N -0.71 -12.17 5.51 -465.96 -2.57 -14.74 16 17 C 0.55 12.95 7.77 86.78 0.67 13.62 16 18 O -0.59 -19.56 16.35 -3.87 -0.06 -19.63 16 19 C -0.16 -2.76 5.87 -20.09 -0.12 -2.88 16 20 C -0.08 -0.86 9.54 22.53 0.21 -0.64 16 21 C -0.13 -0.92 10.03 22.23 0.22 -0.69 16 22 C -0.09 -0.71 10.04 22.33 0.22 -0.49 16 23 C -0.13 -1.53 10.03 22.23 0.22 -1.30 16 24 C -0.08 -1.49 9.60 22.53 0.22 -1.27 16 25 C 0.03 0.79 4.55 44.92 0.20 0.99 16 26 C -0.20 -6.19 8.48 30.62 0.26 -5.93 16 27 C -0.18 -3.92 9.27 30.62 0.28 -3.64 16 28 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 29 H 0.39 14.74 5.76 -92.71 -0.53 14.21 16 30 H 0.08 2.01 5.99 -2.39 -0.01 2.00 16 31 H 0.13 2.77 7.77 -2.39 -0.02 2.75 16 32 H 0.07 0.93 6.87 -2.39 -0.02 0.91 16 33 H 0.10 1.46 7.84 -2.39 -0.02 1.44 16 34 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.06 1.47 7.30 -2.39 -0.02 1.46 16 36 H 0.42 3.77 6.51 -92.71 -0.60 3.17 16 37 H 0.15 0.62 6.41 -2.91 -0.02 0.60 16 38 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 39 H 0.16 0.30 8.06 -2.91 -0.02 0.27 16 40 H 0.15 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.12 2.41 7.65 -2.91 -0.02 2.38 16 42 H 0.11 3.42 8.03 -2.39 -0.02 3.41 16 43 H 0.08 2.91 4.91 -2.39 -0.01 2.90 16 44 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.11 1.91 7.15 -2.39 -0.02 1.90 16 Total: -1.00 -87.42 377.32 -0.42 -87.84 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: -0.17 Total: 36.89 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.58 Total: 6.57 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -7.63 Total: -118.98 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.11 Total: -52.73 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 1.90 Total: 40.41 kcal Total: -87.42 -0.42 -87.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691199607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.926 kcal (2) G-P(sol) polarization free energy of solvation -87.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds