Wall clock time and date at job start Sat Apr 11 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48500 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46878 * 299.99951 * 3 2 1 6 6 H 1.48494 * 109.47146 * 59.99773 * 3 2 1 7 7 C 1.40047 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.46378 * 120.00355 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99592 * 5.40206 * 9 7 2 11 11 N 1.34773 * 119.99985 * 185.39605 * 9 7 2 12 12 C 1.46923 * 120.63375 * 5.74072 * 11 9 7 13 13 C 1.53184 * 108.77666 * 233.58265 * 12 11 9 14 14 C 1.53039 * 109.31705 * 305.36391 * 13 12 11 15 15 C 1.53042 * 109.53403 * 61.36346 * 14 13 12 16 16 C 1.46931 * 120.62846 * 185.71157 * 11 9 7 17 17 H 1.08993 * 109.70541 * 246.27136 * 16 11 9 18 18 C 1.52995 * 109.58565 * 6.63332 * 16 11 9 19 19 N 1.46503 * 109.47084 * 286.48791 * 18 16 11 20 20 C 1.34775 * 120.00199 * 184.76876 * 19 18 16 21 21 O 1.21588 * 119.99578 * 0.02562 * 20 19 18 22 22 N 1.34771 * 120.00372 * 179.97438 * 20 19 18 23 23 C 1.39949 * 120.00483 * 185.20360 * 22 20 19 24 24 C 1.38862 * 120.06713 * 27.53841 * 23 22 20 25 25 C 1.38114 * 119.93055 * 179.97438 * 24 23 22 26 26 C 1.38281 * 120.06877 * 0.02562 * 25 24 23 27 27 C 1.38282 * 120.14168 * 359.95277 * 26 25 24 28 28 C 1.38117 * 120.06800 * 0.04569 * 27 26 25 29 29 H 0.97003 * 120.00354 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.59046 * 113.79449 * 12 11 9 31 31 H 1.09003 * 109.58413 * 353.37561 * 12 11 9 32 32 H 1.09001 * 109.50014 * 185.41130 * 13 12 11 33 33 H 1.09004 * 109.49480 * 65.31616 * 13 12 11 34 34 H 1.09002 * 109.45509 * 301.34574 * 14 13 12 35 35 H 1.08992 * 109.45347 * 181.37660 * 14 13 12 36 36 H 1.09001 * 109.49752 * 178.68873 * 15 14 13 37 37 H 1.08998 * 109.52527 * 58.60350 * 15 14 13 38 38 H 1.09000 * 109.47087 * 166.49010 * 18 16 11 39 39 H 1.08996 * 109.47599 * 46.48589 * 18 16 11 40 40 H 0.97003 * 119.99561 * 4.76590 * 19 18 16 41 41 H 0.97006 * 119.99443 * 5.21047 * 22 20 19 42 42 H 1.08007 * 120.03562 * 359.70318 * 24 23 22 43 43 H 1.08001 * 119.96400 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.92948 * 179.97438 * 26 25 24 45 45 H 1.07990 * 119.96791 * 180.02562 * 27 26 25 46 46 H 1.07995 * 120.03477 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8819 2.3964 1.2124 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2751 -2.4806 -0.0005 10 8 0.0622 -2.4828 -0.0993 11 7 1.9445 -3.6451 0.1087 12 6 3.3931 -3.6558 0.3541 13 6 4.0686 -4.5162 -0.7182 14 6 3.4237 -5.9039 -0.7342 15 6 1.9392 -5.7744 -1.0832 16 6 1.2395 -4.9283 -0.0148 17 1 1.2623 -5.4535 0.9400 18 6 -0.2122 -4.6782 -0.4282 19 7 -0.9592 -4.1420 0.7123 20 6 -2.2870 -3.9344 0.6107 21 8 -2.8649 -4.1925 -0.4275 22 7 -2.9743 -3.4416 1.6600 23 6 -4.3676 -3.3280 1.5929 24 6 -5.0970 -4.1846 0.7789 25 6 -6.4720 -4.0704 0.7152 26 6 -7.1222 -3.1040 1.4605 27 6 -6.3987 -2.2497 2.2724 28 6 -5.0236 -2.3589 2.3404 29 1 -0.4851 0.8400 -0.0004 30 1 3.5937 -4.0761 1.3397 31 1 3.7798 -2.6379 0.3032 32 1 5.1308 -4.6112 -0.4927 33 1 3.9440 -4.0459 -1.6937 34 1 3.5269 -6.3636 0.2488 35 1 3.9190 -6.5258 -1.4797 36 1 1.4857 -6.7650 -1.1172 37 1 1.8342 -5.2926 -2.0552 38 1 -0.6649 -5.6159 -0.7505 39 1 -0.2380 -3.9613 -1.2487 40 1 -0.4982 -3.9365 1.5407 41 1 -2.5033 -3.1655 2.4618 42 1 -4.5893 -4.9365 0.1929 43 1 -7.0398 -4.7360 0.0821 44 1 -8.1973 -3.0164 1.4087 45 1 -6.9094 -1.4963 2.8535 46 1 -4.4591 -1.6917 2.9750 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125041280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:51:18 Heat of formation + Delta-G solvation = -3.194724 kcal Electronic energy + Delta-G solvation = -29232.693033 eV Core-core repulsion = 25316.556817 eV Total energy + Delta-G solvation = -3916.136216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.10229 -39.18042 -37.92931 -35.86841 -34.40730 -33.91482 -32.51215 -31.68790 -31.02336 -30.57726 -28.91280 -26.61289 -25.62112 -23.73594 -22.63096 -22.13502 -21.57608 -20.50733 -20.00646 -18.92942 -17.78011 -17.30255 -16.42031 -15.93142 -15.74185 -15.14489 -14.81098 -14.63188 -14.38532 -14.17113 -13.88127 -13.83542 -13.57121 -13.50497 -13.06350 -12.97059 -12.71927 -12.56756 -12.19347 -11.85326 -11.63972 -11.53301 -11.41304 -11.21173 -11.06999 -10.94125 -10.74718 -10.63484 -10.51069 -10.28523 -10.19638 -9.97412 -9.77143 -9.33932 -8.94537 -8.61720 -8.11156 -7.59806 -7.23542 -7.13869 -6.20729 -4.69709 1.66005 1.73063 3.06620 3.16475 3.19115 3.26051 3.86670 4.00726 4.31488 4.38644 4.48810 4.80894 5.12096 5.17236 5.20285 5.20859 5.24413 5.43368 5.57539 5.67549 5.67926 5.70326 5.74184 5.87366 5.92188 5.96343 6.05686 6.13238 6.19784 6.25584 6.29387 6.39621 6.41679 6.49862 6.64939 6.66306 6.69655 6.83332 6.93570 6.99669 7.38088 7.38729 7.43857 7.49582 7.57390 8.06881 8.26480 8.68185 8.96696 9.31527 9.32798 10.49393 10.68076 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.004120 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.465675 B = 6795.039803 C = 8999.189603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.090 3.910 3 Si 0.901 3.099 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.070 0.930 9 C 0.548 3.452 10 O -0.548 6.548 11 N -0.641 5.641 12 C 0.123 3.877 13 C -0.137 4.137 14 C -0.112 4.112 15 C -0.126 4.126 16 C 0.143 3.857 17 H 0.051 0.949 18 C 0.163 3.837 19 N -0.679 5.679 20 C 0.713 3.287 21 O -0.594 6.594 22 N -0.687 5.687 23 C 0.191 3.809 24 C -0.134 4.134 25 C -0.102 4.102 26 C -0.157 4.157 27 C -0.100 4.100 28 C -0.161 4.161 29 H 0.267 0.733 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.390 0.610 41 H 0.403 0.597 42 H 0.144 0.856 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.119 0.881 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -8.476 5.072 9.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.088 0.912 9 C 0.354 3.646 10 O -0.430 6.430 11 N -0.380 5.380 12 C -0.002 4.002 13 C -0.175 4.175 14 C -0.150 4.150 15 C -0.165 4.165 16 C 0.037 3.963 17 H 0.069 0.931 18 C 0.039 3.961 19 N -0.330 5.330 20 C 0.414 3.586 21 O -0.473 6.473 22 N -0.332 5.332 23 C 0.093 3.907 24 C -0.154 4.154 25 C -0.120 4.120 26 C -0.176 4.176 27 C -0.119 4.119 28 C -0.182 4.182 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.224 0.776 41 H 0.238 0.762 42 H 0.161 0.839 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.431 -8.633 4.031 9.833 hybrid contribution 1.241 1.341 0.742 1.972 sum -1.189 -7.291 4.773 8.795 Atomic orbital electron populations 1.70001 1.06796 1.27116 1.35090 1.25665 0.94566 1.00067 0.92711 0.86415 0.80524 0.82223 0.78205 1.18875 1.20261 1.20307 1.21016 0.93481 0.89350 1.54185 0.91215 1.18264 0.87347 0.82052 0.76939 1.90764 1.13271 1.85113 1.53841 1.48300 1.06885 1.04550 1.78287 1.21417 0.82241 1.01039 0.95475 1.21960 0.98702 0.95947 1.00917 1.21438 0.95504 0.97142 1.00924 1.21869 0.95582 0.99337 0.99729 1.21046 0.91733 0.86648 0.96826 0.93113 1.21124 0.87891 0.96334 0.90743 1.44714 1.05132 1.66603 1.16512 1.15669 0.82084 0.78216 0.82631 1.90804 1.68987 1.59208 1.28342 1.42663 1.04890 1.67084 1.18561 1.17615 0.82077 0.94044 0.96925 1.21410 0.93570 1.00170 1.00279 1.21004 0.94054 0.98304 0.98669 1.20984 0.99451 0.97792 0.99365 1.20818 0.93261 0.98919 0.98876 1.20828 0.95013 0.98494 1.03901 0.92260 0.94199 0.88858 0.92136 0.91704 0.92432 0.92567 0.91822 0.91433 0.93956 0.89360 0.77604 0.76226 0.83875 0.86307 0.86668 0.86270 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.47 11.84 55.55 0.66 -20.82 16 2 C 0.09 2.36 5.50 -17.37 -0.10 2.26 16 3 Si 0.90 19.40 29.56 -169.99 -5.02 14.37 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.54 -14.04 8.85 -35.63 -0.32 -14.36 16 8 H 0.07 1.68 5.69 -52.48 -0.30 1.38 16 9 C 0.55 13.67 7.25 -12.99 -0.09 13.57 16 10 O -0.55 -14.89 8.74 5.20 0.05 -14.84 16 11 N -0.64 -12.70 2.97 -166.87 -0.50 -13.20 16 12 C 0.12 2.05 6.35 -3.72 -0.02 2.03 16 13 C -0.14 -1.90 6.08 -26.62 -0.16 -2.06 16 14 C -0.11 -1.42 5.88 -26.69 -0.16 -1.58 16 15 C -0.13 -1.81 5.34 -26.61 -0.14 -1.96 16 16 C 0.14 2.44 2.91 -67.60 -0.20 2.25 16 17 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 18 C 0.16 3.24 4.31 -4.04 -0.02 3.22 16 19 N -0.68 -13.65 3.18 -65.23 -0.21 -13.86 16 20 C 0.71 15.29 8.04 -86.92 -0.70 14.59 16 21 O -0.59 -14.52 13.64 5.29 0.07 -14.45 16 22 N -0.69 -12.53 5.37 -14.23 -0.08 -12.60 16 23 C 0.19 3.36 6.39 -83.69 -0.53 2.83 16 24 C -0.13 -2.34 8.70 -39.40 -0.34 -2.69 16 25 C -0.10 -1.49 10.04 -39.61 -0.40 -1.89 16 26 C -0.16 -2.08 10.04 -39.55 -0.40 -2.47 16 27 C -0.10 -1.35 10.04 -39.61 -0.40 -1.75 16 28 C -0.16 -2.47 9.95 -39.39 -0.39 -2.86 16 29 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.69 5.32 -51.93 -0.28 1.41 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.09 2.18 6.35 -51.93 -0.33 1.85 16 40 H 0.39 7.47 8.09 -40.82 -0.33 7.14 16 41 H 0.40 6.35 8.81 -40.82 -0.36 5.99 16 42 H 0.14 2.75 5.96 -52.48 -0.31 2.44 16 43 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 45 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -32.42 366.24 -10.41 -42.83 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -6.53 Total: 17.90 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: -4.36 Total: 9.14 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.12 Total: -60.47 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: 0.12 Total: -29.29 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.42 -10.41 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125041280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.637 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds