Wall clock time and date at job start Sat Apr 11 2020 02:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86798 * 119.99954 * 2 1 4 4 H 1.48500 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46878 * 299.99951 * 3 2 1 6 6 H 1.48494 * 109.47146 * 59.99773 * 3 2 1 7 7 C 1.40047 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00006 * 180.02562 * 7 2 1 9 9 C 1.46378 * 120.00355 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99592 * 5.40206 * 9 7 2 11 11 N 1.34773 * 119.99985 * 185.39605 * 9 7 2 12 12 C 1.46923 * 120.63375 * 5.74072 * 11 9 7 13 13 C 1.53184 * 108.77666 * 233.58265 * 12 11 9 14 14 C 1.53039 * 109.31705 * 305.36391 * 13 12 11 15 15 C 1.53042 * 109.53403 * 61.36346 * 14 13 12 16 16 C 1.46931 * 120.62846 * 185.71157 * 11 9 7 17 17 H 1.08993 * 109.70541 * 246.27136 * 16 11 9 18 18 C 1.52995 * 109.58565 * 6.63332 * 16 11 9 19 19 N 1.46503 * 109.47084 * 286.48791 * 18 16 11 20 20 C 1.34775 * 120.00199 * 184.76876 * 19 18 16 21 21 O 1.21588 * 119.99578 * 0.02562 * 20 19 18 22 22 N 1.34771 * 120.00372 * 179.97438 * 20 19 18 23 23 C 1.39949 * 120.00483 * 185.20360 * 22 20 19 24 24 C 1.38862 * 120.06713 * 27.53841 * 23 22 20 25 25 C 1.38114 * 119.93055 * 179.97438 * 24 23 22 26 26 C 1.38281 * 120.06877 * 0.02562 * 25 24 23 27 27 C 1.38282 * 120.14168 * 359.95277 * 26 25 24 28 28 C 1.38117 * 120.06800 * 0.04569 * 27 26 25 29 29 H 0.97003 * 120.00354 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.59046 * 113.79449 * 12 11 9 31 31 H 1.09003 * 109.58413 * 353.37561 * 12 11 9 32 32 H 1.09001 * 109.50014 * 185.41130 * 13 12 11 33 33 H 1.09004 * 109.49480 * 65.31616 * 13 12 11 34 34 H 1.09002 * 109.45509 * 301.34574 * 14 13 12 35 35 H 1.08992 * 109.45347 * 181.37660 * 14 13 12 36 36 H 1.09001 * 109.49752 * 178.68873 * 15 14 13 37 37 H 1.08998 * 109.52527 * 58.60350 * 15 14 13 38 38 H 1.09000 * 109.47087 * 166.49010 * 18 16 11 39 39 H 1.08996 * 109.47599 * 46.48589 * 18 16 11 40 40 H 0.97003 * 119.99561 * 4.76590 * 19 18 16 41 41 H 0.97006 * 119.99443 * 5.21047 * 22 20 19 42 42 H 1.08007 * 120.03562 * 359.70318 * 24 23 22 43 43 H 1.08001 * 119.96400 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.92948 * 179.97438 * 26 25 24 45 45 H 1.07990 * 119.96791 * 180.02562 * 27 26 25 46 46 H 1.07995 * 120.03477 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3964 -1.2125 6 1 1.8819 2.3964 1.2124 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2751 -2.4806 -0.0005 10 8 0.0622 -2.4828 -0.0993 11 7 1.9445 -3.6451 0.1087 12 6 3.3931 -3.6558 0.3541 13 6 4.0686 -4.5162 -0.7182 14 6 3.4237 -5.9039 -0.7342 15 6 1.9392 -5.7744 -1.0832 16 6 1.2395 -4.9283 -0.0148 17 1 1.2623 -5.4535 0.9400 18 6 -0.2122 -4.6782 -0.4282 19 7 -0.9592 -4.1420 0.7123 20 6 -2.2870 -3.9344 0.6107 21 8 -2.8649 -4.1925 -0.4275 22 7 -2.9743 -3.4416 1.6600 23 6 -4.3676 -3.3280 1.5929 24 6 -5.0970 -4.1846 0.7789 25 6 -6.4720 -4.0704 0.7152 26 6 -7.1222 -3.1040 1.4605 27 6 -6.3987 -2.2497 2.2724 28 6 -5.0236 -2.3589 2.3404 29 1 -0.4851 0.8400 -0.0004 30 1 3.5937 -4.0761 1.3397 31 1 3.7798 -2.6379 0.3032 32 1 5.1308 -4.6112 -0.4927 33 1 3.9440 -4.0459 -1.6937 34 1 3.5269 -6.3636 0.2488 35 1 3.9190 -6.5258 -1.4797 36 1 1.4857 -6.7650 -1.1172 37 1 1.8342 -5.2926 -2.0552 38 1 -0.6649 -5.6159 -0.7505 39 1 -0.2380 -3.9613 -1.2487 40 1 -0.4982 -3.9365 1.5407 41 1 -2.5033 -3.1655 2.4618 42 1 -4.5893 -4.9365 0.1929 43 1 -7.0398 -4.7360 0.0821 44 1 -8.1973 -3.0164 1.4087 45 1 -6.9094 -1.4963 2.8535 46 1 -4.4591 -1.6917 2.9750 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125041280.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:51:17 Heat of formation + Delta-G solvation = -23.792813 kcal Electronic energy + Delta-G solvation = -29233.586233 eV Core-core repulsion = 25316.556817 eV Total energy + Delta-G solvation = -3917.029416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.62551 -40.66865 -39.31322 -37.50006 -35.89770 -35.55321 -34.45224 -33.17998 -32.42200 -31.75980 -30.19065 -28.41671 -27.20037 -25.11815 -23.90045 -23.41315 -23.10094 -21.85120 -21.57695 -20.47453 -19.33528 -18.67198 -18.19366 -17.49054 -17.18022 -16.71203 -16.31881 -16.15280 -15.92472 -15.54844 -15.36441 -15.10598 -14.95821 -14.80623 -14.53870 -14.32034 -14.15539 -13.93596 -13.70202 -13.45864 -13.15048 -13.08987 -12.88951 -12.76889 -12.59979 -12.38837 -12.11433 -12.02006 -11.94136 -11.68692 -11.46021 -11.40381 -11.19939 -10.97404 -10.90257 -9.82000 -9.76333 -9.19545 -8.93571 -8.73508 -8.15278 -6.71981 0.45679 0.53072 1.35840 1.38730 1.52665 1.76164 2.23184 2.34546 2.55765 2.84895 3.01414 3.34196 3.70719 3.80441 4.03283 4.04053 4.14038 4.14552 4.31112 4.36038 4.38339 4.42449 4.57672 4.61301 4.66753 4.70422 4.74110 4.90077 5.00950 5.09777 5.12647 5.15120 5.19123 5.27977 5.31014 5.41289 5.45851 5.49666 5.58687 5.65951 5.67644 5.79513 5.84764 6.09149 6.20489 6.21877 6.51156 6.97560 7.12308 7.52357 7.68118 8.56902 8.77802 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.004120 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.465675 B = 6795.039803 C = 8999.189603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.039 3.961 3 Si 0.978 3.022 4 H -0.249 1.249 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.568 4.568 8 H 0.082 0.918 9 C 0.536 3.464 10 O -0.579 6.579 11 N -0.641 5.641 12 C 0.117 3.883 13 C -0.131 4.131 14 C -0.106 4.106 15 C -0.122 4.122 16 C 0.146 3.854 17 H 0.075 0.925 18 C 0.171 3.829 19 N -0.673 5.673 20 C 0.704 3.296 21 O -0.632 6.632 22 N -0.680 5.680 23 C 0.156 3.844 24 C -0.159 4.159 25 C -0.105 4.105 26 C -0.147 4.147 27 C -0.096 4.096 28 C -0.167 4.167 29 H 0.265 0.735 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.033 0.967 40 H 0.394 0.606 41 H 0.412 0.588 42 H 0.116 0.884 43 H 0.141 0.859 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.457 -8.937 6.409 11.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.176 4.176 3 Si 0.799 3.201 4 H -0.172 1.172 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.605 4.605 8 H 0.100 0.900 9 C 0.340 3.660 10 O -0.462 6.462 11 N -0.380 5.380 12 C -0.006 4.006 13 C -0.169 4.169 14 C -0.143 4.143 15 C -0.161 4.161 16 C 0.042 3.958 17 H 0.093 0.907 18 C 0.047 3.953 19 N -0.323 5.323 20 C 0.405 3.595 21 O -0.515 6.515 22 N -0.326 5.326 23 C 0.060 3.940 24 C -0.180 4.180 25 C -0.124 4.124 26 C -0.166 4.166 27 C -0.115 4.115 28 C -0.188 4.188 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.228 0.772 41 H 0.248 0.752 42 H 0.134 0.866 43 H 0.159 0.841 44 H 0.171 0.829 45 H 0.173 0.827 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.637 -9.126 5.407 10.733 hybrid contribution 0.928 1.418 0.329 1.726 sum -0.709 -7.708 5.735 9.634 Atomic orbital electron populations 1.70179 1.08844 1.27904 1.37373 1.26661 0.95258 1.03970 0.91740 0.85251 0.79687 0.77124 0.77988 1.17233 1.20586 1.19647 1.21498 0.94351 0.90326 1.54284 0.89966 1.18445 0.87207 0.83563 0.76755 1.90760 1.14593 1.86182 1.54706 1.48131 1.08369 1.04218 1.77260 1.21601 0.80221 1.01020 0.97771 1.21910 1.00341 0.96018 0.98624 1.21433 0.93544 0.96574 1.02763 1.21874 0.97265 0.99613 0.97386 1.21211 0.89753 0.85935 0.98935 0.90707 1.20982 0.90184 0.94963 0.89170 1.44663 1.04789 1.66220 1.16584 1.15951 0.82464 0.78258 0.82873 1.90762 1.69792 1.60918 1.30033 1.42512 1.05476 1.66566 1.18044 1.17955 0.81642 0.95706 0.98703 1.21359 0.95122 1.00496 1.01054 1.21306 0.92901 0.99134 0.99057 1.21440 1.01331 0.96194 0.97632 1.21288 0.92425 0.99231 0.98508 1.21086 0.96233 0.97942 1.03564 0.92477 0.91950 0.90719 0.89039 0.93754 0.90525 0.90143 0.89248 0.93629 0.92875 0.94872 0.77206 0.75181 0.86635 0.84143 0.82900 0.82707 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.91 11.84 21.84 0.26 -47.65 16 2 C 0.04 2.09 5.50 85.30 0.47 2.56 16 3 Si 0.98 40.53 29.56 68.60 2.03 42.56 16 4 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.57 -30.09 8.85 24.83 0.22 -29.87 16 8 H 0.08 4.01 5.69 -2.91 -0.02 3.99 16 9 C 0.54 27.77 7.25 86.36 0.63 28.40 16 10 O -0.58 -33.26 8.74 -4.31 -0.04 -33.29 16 11 N -0.64 -25.61 2.97 -800.08 -2.38 -27.99 16 12 C 0.12 3.75 6.35 86.36 0.55 4.30 16 13 C -0.13 -3.31 6.08 30.67 0.19 -3.13 16 14 C -0.11 -2.30 5.88 30.62 0.18 -2.11 16 15 C -0.12 -3.33 5.34 30.67 0.16 -3.17 16 16 C 0.15 4.95 2.91 44.97 0.13 5.09 16 17 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 18 C 0.17 7.15 4.31 86.38 0.37 7.53 16 19 N -0.67 -28.59 3.18 -478.55 -1.52 -30.11 16 20 C 0.70 32.27 8.04 179.06 1.44 33.71 16 21 O -0.63 -33.30 13.64 -3.99 -0.05 -33.36 16 22 N -0.68 -26.36 5.37 -317.18 -1.70 -28.06 16 23 C 0.16 5.72 6.39 38.15 0.24 5.97 16 24 C -0.16 -5.86 8.70 22.39 0.19 -5.67 16 25 C -0.11 -3.03 10.04 22.25 0.22 -2.80 16 26 C -0.15 -3.51 10.04 22.29 0.22 -3.29 16 27 C -0.10 -2.36 10.04 22.25 0.22 -2.14 16 28 C -0.17 -5.06 9.95 22.39 0.22 -4.84 16 29 H 0.27 14.67 8.29 -92.71 -0.77 13.90 16 30 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.07 2.67 5.32 -2.39 -0.01 2.65 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 2.07 8.08 -2.39 -0.02 2.05 16 39 H 0.03 1.76 6.35 -2.39 -0.02 1.74 16 40 H 0.39 15.78 8.09 -92.71 -0.75 15.03 16 41 H 0.41 13.78 8.81 -92.70 -0.82 12.97 16 42 H 0.12 4.83 5.96 -2.91 -0.02 4.82 16 43 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 44 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 45 H 0.16 2.69 8.06 -2.92 -0.02 2.66 16 46 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -76.66 366.24 1.72 -74.95 By element: Atomic # 1 Polarization: 52.97 SS G_CDS: -0.55 Total: 52.42 kcal Atomic # 6 Polarization: 24.86 SS G_CDS: 5.67 Total: 30.53 kcal Atomic # 7 Polarization: -128.47 SS G_CDS: -5.34 Total: -133.81 kcal Atomic # 8 Polarization: -66.56 SS G_CDS: -0.09 Total: -66.65 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -76.66 1.72 -74.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125041280.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.153 kcal (2) G-P(sol) polarization free energy of solvation -76.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds