Wall clock time and date at job start Sat Apr 11 2020 02:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99614 * 2 1 4 4 H 1.48507 * 109.46946 * 240.00040 * 3 2 1 5 5 H 1.48496 * 109.47447 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46924 * 120.00571 * 3 2 1 7 7 C 1.37877 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99516 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00416 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47227 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.46274 * 118.71322 * 90.00028 * 11 10 9 13 13 C 1.52552 * 109.56645 * 163.94647 * 12 11 10 14 14 C 1.53388 * 113.83735 * 176.52616 * 13 12 11 15 15 N 1.48064 * 86.02851 * 91.25356 * 14 13 12 16 16 C 1.46905 * 110.99881 * 137.23034 * 15 14 13 17 17 C 1.50694 * 109.46770 * 70.55030 * 16 15 14 18 18 C 1.38675 * 120.41795 * 90.00168 * 17 16 15 19 19 C 1.38630 * 118.41876 * 180.02562 * 18 17 16 20 20 C 1.38230 * 119.16288 * 359.97438 * 19 18 17 21 21 N 1.31855 * 120.76270 * 0.02562 * 20 19 18 22 22 C 1.31890 * 121.72644 * 359.70102 * 21 20 19 23 23 C 1.48065 * 90.84038 * 24.30826 * 15 14 13 24 24 O 1.42683 * 112.47735 * 45.21244 * 13 12 11 25 25 C 1.43046 * 112.95067 * 295.90172 * 24 13 12 26 26 C 1.33510 * 118.78088 * 270.15368 * 11 10 9 27 27 O 1.21282 * 118.23193 * 3.21215 * 26 11 10 28 28 H 0.96994 * 120.00063 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46439 * 60.00251 * 9 7 2 30 30 H 1.08994 * 109.46900 * 300.00770 * 9 7 2 31 31 H 1.08998 * 109.47018 * 60.00422 * 10 9 7 32 32 H 1.08996 * 109.47146 * 300.00023 * 10 9 7 33 33 H 1.08998 * 109.45376 * 43.91613 * 12 11 10 34 34 H 1.09006 * 109.45764 * 283.97292 * 12 11 10 35 35 H 1.09003 * 113.78313 * 205.53489 * 14 13 12 36 36 H 1.09001 * 113.77973 * 336.97962 * 14 13 12 37 37 H 1.08992 * 109.46747 * 190.55025 * 16 15 14 38 38 H 1.09000 * 109.46822 * 310.55141 * 16 15 14 39 39 H 1.07994 * 120.78803 * 359.97312 * 18 17 16 40 40 H 1.07997 * 120.42201 * 180.02562 * 19 18 17 41 41 H 1.08002 * 119.61931 * 179.97438 * 20 19 18 42 42 H 1.07993 * 119.61787 * 180.31405 * 22 21 20 43 43 H 1.09007 * 113.78333 * 221.42086 * 23 15 14 44 44 H 1.08994 * 113.78809 * 89.97428 * 23 15 14 45 45 H 1.09002 * 109.34998 * 167.53007 * 25 24 13 46 46 H 1.09000 * 109.35269 * 287.23343 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 0.0001 12 6 1.1611 -5.5398 -1.2825 13 6 0.7770 -7.0003 -1.0664 14 6 0.3078 -7.7130 -2.3410 15 7 1.7252 -8.1003 -2.5228 16 6 1.8377 -9.5030 -2.9447 17 6 1.3445 -9.6423 -4.3618 18 6 2.2198 -9.4966 -5.4275 19 6 1.7215 -9.6327 -6.7139 20 6 0.3784 -9.9076 -6.8905 21 7 -0.4250 -10.0396 -5.8533 22 6 0.0153 -9.9220 -4.6156 23 6 1.9722 -7.9620 -1.0695 24 8 -0.0986 -7.1751 0.0466 25 6 0.5051 -6.8168 1.2929 26 6 1.1892 -5.4856 1.1705 27 8 1.4647 -4.8834 2.1866 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6248 -2.5570 0.8896 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 2.0157 -5.4851 -1.9569 34 1 0.3188 -5.0038 -1.7201 35 1 -0.3577 -8.5558 -2.1537 36 1 -0.0654 -7.0371 -3.1104 37 1 2.8803 -9.8161 -2.8904 38 1 1.2353 -10.1296 -2.2870 39 1 3.2647 -9.2815 -5.2592 40 1 2.3746 -9.5261 -7.5675 41 1 -0.0177 -10.0147 -7.8895 42 1 -0.6719 -10.0417 -3.7911 43 1 2.9217 -7.4839 -0.8285 44 1 1.8004 -8.8785 -0.5052 45 1 -0.2640 -6.7581 2.0631 46 1 1.2373 -7.5749 1.5708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272948708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:52:52 Heat of formation + Delta-G solvation = 6.733913 kcal Electronic energy + Delta-G solvation = -28259.733820 eV Core-core repulsion = 24344.028142 eV Total energy + Delta-G solvation = -3915.705678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54765 -40.42270 -39.22527 -36.89720 -35.42910 -33.69468 -33.00378 -32.22728 -30.32139 -29.68224 -27.70797 -26.59192 -26.53164 -24.54774 -24.13031 -23.85906 -22.09124 -21.40566 -20.07827 -18.20263 -17.86599 -17.40283 -16.91388 -16.73435 -16.28550 -16.02286 -15.92725 -15.46352 -15.23239 -14.68130 -14.48569 -14.25663 -14.05558 -13.84476 -13.67806 -13.43257 -13.32550 -13.05745 -12.96733 -12.64978 -12.41326 -12.18037 -12.03146 -11.75786 -11.43072 -11.30582 -10.99713 -10.86979 -10.68262 -10.35068 -10.11209 -9.88306 -9.83763 -9.77173 -9.50707 -9.33182 -9.19860 -9.00366 -8.33886 -8.11984 -5.99082 -4.02450 0.72298 0.95277 2.87687 3.04321 3.34642 3.36662 3.39152 3.42141 3.44756 3.65696 4.00989 4.11853 4.27448 4.31518 4.43497 4.47803 4.61635 4.63732 4.65614 4.81215 4.90651 4.95416 5.07351 5.12789 5.18038 5.27607 5.35234 5.36911 5.41402 5.48986 5.51436 5.58175 5.72073 5.81835 5.83341 5.90986 6.07836 6.33701 6.47889 6.49895 6.64865 6.82110 6.88570 7.60226 7.62953 7.71889 7.93031 8.00926 8.35956 8.50784 9.03845 9.61135 11.12409 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014067 B = 0.002653 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.028848 B =10549.819874 C =11780.433528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.015 3.985 10 C 0.114 3.886 11 N -0.595 5.595 12 C 0.116 3.884 13 C 0.070 3.930 14 C 0.027 3.973 15 N -0.465 5.465 16 C 0.066 3.934 17 C -0.132 4.132 18 C -0.055 4.055 19 C -0.173 4.173 20 C 0.096 3.904 21 N -0.484 5.484 22 C 0.105 3.895 23 C -0.019 4.019 24 O -0.358 6.358 25 C 0.053 3.947 26 C 0.478 3.522 27 O -0.539 6.539 28 H 0.261 0.739 29 H 0.015 0.985 30 H 0.022 0.978 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.128 0.872 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.198 -25.144 -10.594 27.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.023 4.023 10 C -0.006 4.006 11 N -0.328 5.328 12 C -0.008 4.008 13 C 0.029 3.971 14 C -0.102 4.102 15 N -0.188 5.188 16 C -0.063 4.063 17 C -0.134 4.134 18 C -0.081 4.081 19 C -0.193 4.193 20 C -0.061 4.061 21 N -0.192 5.192 22 C -0.052 4.052 23 C -0.147 4.147 24 O -0.275 6.275 25 C -0.026 4.026 26 C 0.264 3.736 27 O -0.417 6.417 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.172 0.828 42 H 0.169 0.831 43 H 0.118 0.882 44 H 0.102 0.898 45 H 0.146 0.854 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.527 -24.625 -10.692 26.964 hybrid contribution 1.039 0.712 0.568 1.382 sum 3.567 -23.912 -10.124 26.211 Atomic orbital electron populations 1.69966 1.06100 1.26770 1.50367 1.25002 0.94847 0.99275 0.95165 0.86616 0.79543 0.82961 0.78628 1.20201 1.21274 1.20165 1.21044 0.92952 0.90725 1.51279 0.92595 1.19340 0.94351 0.90950 0.97658 1.21959 0.95505 0.81572 1.01553 1.47658 1.56026 1.24336 1.04759 1.21656 1.02381 0.89991 0.86723 1.23326 0.90795 0.94774 0.88203 1.24057 0.91462 0.99786 0.94887 1.68682 1.15185 1.19207 1.15764 1.21513 1.02240 0.90562 0.91954 1.20690 0.95138 1.01591 0.95973 1.21500 1.00319 0.94383 0.91921 1.22182 0.97299 1.01743 0.98042 1.22803 0.90319 0.94908 0.98049 1.67709 1.38947 1.13135 0.99450 1.22694 0.93118 0.95029 0.94370 1.24615 1.00595 0.99705 0.89819 1.88100 1.38778 1.86507 1.14145 1.22765 0.99382 0.93032 0.87421 1.20591 0.80586 0.88311 0.84093 1.90767 1.54221 1.62088 1.34654 0.92896 0.96668 0.95935 0.90654 0.91671 0.88688 0.90168 0.89496 0.87778 0.89127 0.92473 0.84667 0.84699 0.82795 0.83145 0.88218 0.89848 0.85441 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.01 0.40 5.29 -27.89 -0.15 0.25 16 10 C 0.11 2.45 5.20 -4.04 -0.02 2.43 16 11 N -0.60 -10.72 2.83 -174.73 -0.49 -11.22 16 12 C 0.12 1.65 5.79 -4.39 -0.03 1.62 16 13 C 0.07 0.79 1.21 -90.51 -0.11 0.68 16 14 C 0.03 0.25 6.38 -2.99 -0.02 0.23 16 15 N -0.46 -4.03 6.14 -242.35 -1.49 -5.52 16 16 C 0.07 0.45 4.99 -4.98 -0.02 0.42 16 17 C -0.13 -1.02 5.13 -104.48 -0.54 -1.55 16 18 C -0.05 -0.40 9.86 -39.28 -0.39 -0.78 16 19 C -0.17 -1.18 10.11 -39.44 -0.40 -1.58 16 20 C 0.10 0.76 11.18 -17.54 -0.20 0.57 16 21 N -0.48 -4.80 10.36 -13.25 -0.14 -4.93 16 22 C 0.11 0.91 10.16 -17.55 -0.18 0.73 16 23 C -0.02 -0.17 6.67 -2.98 -0.02 -0.19 16 24 O -0.36 -4.57 10.66 -35.23 -0.38 -4.94 16 25 C 0.05 0.70 6.67 35.75 0.24 0.93 16 26 C 0.48 8.71 7.56 -11.81 -0.09 8.62 16 27 O -0.54 -12.21 16.32 5.56 0.09 -12.12 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.71 7.29 -51.93 -0.38 1.33 16 32 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 33 H 0.09 1.24 7.88 -51.93 -0.41 0.83 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.09 0.69 7.12 -51.93 -0.37 0.32 16 36 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 37 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.15 1.06 7.46 -52.49 -0.39 0.67 16 43 H 0.10 0.96 8.09 -51.92 -0.42 0.54 16 44 H 0.08 0.63 7.79 -51.93 -0.40 0.23 16 45 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 46 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -35.59 379.39 -10.24 -45.82 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.94 Total: -1.70 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -2.33 Total: -1.33 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -1.38 Total: -48.43 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.28 Total: -17.06 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.59 -10.24 -45.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272948708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.558 kcal (2) G-P(sol) polarization free energy of solvation -35.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds