Wall clock time and date at job start Sat Apr 11 2020 02:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99614 * 2 1 4 4 H 1.48507 * 109.46946 * 240.00040 * 3 2 1 5 5 H 1.48496 * 109.47447 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46924 * 120.00571 * 3 2 1 7 7 C 1.37877 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99516 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00416 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47227 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47106 * 179.97438 * 10 9 7 12 12 C 1.46274 * 118.71322 * 90.00028 * 11 10 9 13 13 C 1.52552 * 109.56645 * 163.94647 * 12 11 10 14 14 C 1.53388 * 113.83735 * 176.52616 * 13 12 11 15 15 N 1.48064 * 86.02851 * 91.25356 * 14 13 12 16 16 C 1.46905 * 110.99881 * 137.23034 * 15 14 13 17 17 C 1.50694 * 109.46770 * 70.55030 * 16 15 14 18 18 C 1.38675 * 120.41795 * 90.00168 * 17 16 15 19 19 C 1.38630 * 118.41876 * 180.02562 * 18 17 16 20 20 C 1.38230 * 119.16288 * 359.97438 * 19 18 17 21 21 N 1.31855 * 120.76270 * 0.02562 * 20 19 18 22 22 C 1.31890 * 121.72644 * 359.70102 * 21 20 19 23 23 C 1.48065 * 90.84038 * 24.30826 * 15 14 13 24 24 O 1.42683 * 112.47735 * 45.21244 * 13 12 11 25 25 C 1.43046 * 112.95067 * 295.90172 * 24 13 12 26 26 C 1.33510 * 118.78088 * 270.15368 * 11 10 9 27 27 O 1.21282 * 118.23193 * 3.21215 * 26 11 10 28 28 H 0.96994 * 120.00063 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46439 * 60.00251 * 9 7 2 30 30 H 1.08994 * 109.46900 * 300.00770 * 9 7 2 31 31 H 1.08998 * 109.47018 * 60.00422 * 10 9 7 32 32 H 1.08996 * 109.47146 * 300.00023 * 10 9 7 33 33 H 1.08998 * 109.45376 * 43.91613 * 12 11 10 34 34 H 1.09006 * 109.45764 * 283.97292 * 12 11 10 35 35 H 1.09003 * 113.78313 * 205.53489 * 14 13 12 36 36 H 1.09001 * 113.77973 * 336.97962 * 14 13 12 37 37 H 1.08992 * 109.46747 * 190.55025 * 16 15 14 38 38 H 1.09000 * 109.46822 * 310.55141 * 16 15 14 39 39 H 1.07994 * 120.78803 * 359.97312 * 18 17 16 40 40 H 1.07997 * 120.42201 * 180.02562 * 19 18 17 41 41 H 1.08002 * 119.61931 * 179.97438 * 20 19 18 42 42 H 1.07993 * 119.61787 * 180.31405 * 22 21 20 43 43 H 1.09007 * 113.78333 * 221.42086 * 23 15 14 44 44 H 1.08994 * 113.78809 * 89.97428 * 23 15 14 45 45 H 1.09002 * 109.34998 * 167.53007 * 25 24 13 46 46 H 1.09000 * 109.35269 * 287.23343 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5129 -4.9308 0.0001 12 6 1.1611 -5.5398 -1.2825 13 6 0.7770 -7.0003 -1.0664 14 6 0.3078 -7.7130 -2.3410 15 7 1.7252 -8.1003 -2.5228 16 6 1.8377 -9.5030 -2.9447 17 6 1.3445 -9.6423 -4.3618 18 6 2.2198 -9.4966 -5.4275 19 6 1.7215 -9.6327 -6.7139 20 6 0.3784 -9.9076 -6.8905 21 7 -0.4250 -10.0396 -5.8533 22 6 0.0153 -9.9220 -4.6156 23 6 1.9722 -7.9620 -1.0695 24 8 -0.0986 -7.1751 0.0466 25 6 0.5051 -6.8168 1.2929 26 6 1.1892 -5.4856 1.1705 27 8 1.4647 -4.8834 2.1866 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6248 -2.5570 0.8896 31 1 2.8720 -3.6043 0.8895 32 1 2.8720 -3.6043 -0.8905 33 1 2.0157 -5.4851 -1.9569 34 1 0.3188 -5.0038 -1.7201 35 1 -0.3577 -8.5558 -2.1537 36 1 -0.0654 -7.0371 -3.1104 37 1 2.8803 -9.8161 -2.8904 38 1 1.2353 -10.1296 -2.2870 39 1 3.2647 -9.2815 -5.2592 40 1 2.3746 -9.5261 -7.5675 41 1 -0.0177 -10.0147 -7.8895 42 1 -0.6719 -10.0417 -3.7911 43 1 2.9217 -7.4839 -0.8285 44 1 1.8004 -8.8785 -0.5052 45 1 -0.2640 -6.7581 2.0631 46 1 1.2373 -7.5749 1.5708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272948708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:52:51 Heat of formation + Delta-G solvation = -20.135262 kcal Electronic energy + Delta-G solvation = -28260.898955 eV Core-core repulsion = 24344.028142 eV Total energy + Delta-G solvation = -3916.870813 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.48199 -41.14753 -40.34683 -37.92162 -37.00948 -35.15484 -34.28421 -32.80764 -32.09058 -30.68383 -28.87933 -27.74425 -27.28074 -26.33566 -24.94514 -24.43656 -23.46889 -22.47162 -21.26495 -19.35607 -18.93688 -18.73211 -17.94146 -17.67918 -17.32850 -17.18282 -16.95230 -16.57191 -16.36126 -16.12115 -15.74478 -15.22481 -14.96219 -14.78831 -14.62860 -14.53350 -14.29655 -14.27824 -14.04736 -13.85684 -13.68806 -13.45195 -13.17470 -12.90050 -12.83171 -12.64327 -12.42728 -12.31363 -11.97256 -11.90966 -11.69830 -11.50448 -11.24901 -10.71022 -10.60522 -10.45338 -10.34394 -10.09911 -9.78483 -9.71776 -8.24373 -6.37585 0.17971 0.40797 1.37661 1.42584 1.46187 1.50460 1.81575 2.37960 2.42919 2.74587 2.98718 3.08904 3.20275 3.27436 3.54781 3.60960 3.76121 3.89225 3.96630 4.11928 4.13365 4.15530 4.25493 4.30584 4.35534 4.42763 4.49249 4.51253 4.55579 4.60739 4.67021 4.73017 4.76822 4.82679 4.89681 4.93155 5.13905 5.14980 5.27674 5.38087 5.41022 5.53732 5.73410 5.79665 5.82057 5.86898 6.13665 6.41866 6.77637 7.05002 7.07039 7.32123 8.87923 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014067 B = 0.002653 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.028848 B =10549.819874 C =11780.433528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.027 3.973 10 C 0.130 3.870 11 N -0.598 5.598 12 C 0.114 3.886 13 C 0.062 3.938 14 C 0.035 3.965 15 N -0.471 5.471 16 C 0.069 3.931 17 C -0.135 4.135 18 C -0.064 4.064 19 C -0.173 4.173 20 C 0.081 3.919 21 N -0.517 5.517 22 C 0.091 3.909 23 C -0.006 4.006 24 O -0.361 6.361 25 C 0.065 3.935 26 C 0.468 3.532 27 O -0.593 6.593 28 H 0.264 0.736 29 H -0.006 1.006 30 H -0.027 1.027 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.171 0.829 42 H 0.160 0.840 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.137 0.863 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.898 -26.613 -11.571 29.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.011 4.011 10 C 0.008 3.992 11 N -0.329 5.329 12 C -0.009 4.009 13 C 0.021 3.979 14 C -0.094 4.094 15 N -0.195 5.195 16 C -0.059 4.059 17 C -0.137 4.137 18 C -0.090 4.090 19 C -0.192 4.192 20 C -0.076 4.076 21 N -0.225 5.225 22 C -0.066 4.066 23 C -0.134 4.134 24 O -0.279 6.279 25 C -0.014 4.014 26 C 0.257 3.743 27 O -0.475 6.475 28 H 0.073 0.927 29 H 0.013 0.987 30 H -0.008 1.008 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.169 0.831 40 H 0.176 0.824 41 H 0.188 0.812 42 H 0.177 0.823 43 H 0.114 0.886 44 H 0.125 0.875 45 H 0.155 0.845 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.227 -26.137 -11.706 28.949 hybrid contribution 0.470 1.151 0.809 1.483 sum 4.697 -24.986 -10.898 27.660 Atomic orbital electron populations 1.70121 1.08082 1.28000 1.51238 1.26062 0.95794 1.03725 0.94367 0.85401 0.78188 0.77452 0.79404 1.18318 1.20824 1.19384 1.21520 0.93739 0.91785 1.51249 0.91471 1.19136 0.94516 0.93291 0.94168 1.21506 0.94260 0.81600 1.01872 1.47699 1.55459 1.23179 1.06518 1.21844 1.02222 0.91846 0.84957 1.23446 0.92455 0.93231 0.88773 1.24049 0.92306 0.99814 0.93206 1.68681 1.14482 1.20756 1.15580 1.21560 1.03315 0.89532 0.91512 1.20796 0.94858 1.01406 0.96675 1.21812 1.01125 0.94030 0.92053 1.22465 0.97171 1.00699 0.98869 1.23189 0.90956 0.94941 0.98479 1.67688 1.40155 1.14345 1.00357 1.22906 0.93879 0.95453 0.94353 1.24579 0.98953 0.99593 0.90265 1.88111 1.39493 1.86033 1.14261 1.22773 1.00107 0.90473 0.88015 1.21684 0.79705 0.89823 0.83102 1.90735 1.56408 1.63957 1.36384 0.92696 0.98744 1.00834 0.92207 0.89252 0.87329 0.92017 0.87852 0.88604 0.87808 0.91054 0.83141 0.82376 0.81160 0.82319 0.88562 0.87504 0.84497 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.23 13.29 21.45 0.28 -58.94 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 3 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.54 -32.10 9.11 25.60 0.23 -31.87 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 9 C 0.03 1.51 5.29 29.85 0.16 1.67 16 10 C 0.13 5.70 5.20 86.38 0.45 6.15 16 11 N -0.60 -21.86 2.83 -825.82 -2.34 -24.19 16 12 C 0.11 3.19 5.79 86.27 0.50 3.69 16 13 C 0.06 1.28 1.21 -10.65 -0.01 1.27 16 14 C 0.03 0.57 6.38 86.21 0.55 1.12 16 15 N -0.47 -6.85 6.14 -924.92 -5.68 -12.53 16 16 C 0.07 0.72 4.99 85.55 0.43 1.15 16 17 C -0.14 -1.80 5.13 -19.77 -0.10 -1.90 16 18 C -0.06 -0.78 9.86 22.47 0.22 -0.56 16 19 C -0.17 -2.02 10.11 22.36 0.23 -1.79 16 20 C 0.08 1.19 11.18 84.69 0.95 2.14 16 21 N -0.52 -9.85 10.36 -195.84 -2.03 -11.88 16 22 C 0.09 1.45 10.16 84.67 0.86 2.31 16 23 C -0.01 -0.08 6.67 86.21 0.58 0.49 16 24 O -0.36 -8.53 10.66 -148.98 -1.59 -10.11 16 25 C 0.07 1.60 6.67 71.07 0.47 2.07 16 26 C 0.47 17.24 7.56 87.69 0.66 17.90 16 27 O -0.59 -27.83 16.32 -3.04 -0.05 -27.88 16 28 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 29 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 30 H -0.03 -1.75 8.14 -2.39 -0.02 -1.77 16 31 H 0.06 2.81 7.29 -2.39 -0.02 2.79 16 32 H 0.09 3.45 7.96 -2.39 -0.02 3.43 16 33 H 0.11 2.73 7.88 -2.39 -0.02 2.71 16 34 H 0.06 1.94 8.14 -2.38 -0.02 1.93 16 35 H 0.10 1.37 7.12 -2.39 -0.02 1.35 16 36 H 0.10 1.74 8.09 -2.39 -0.02 1.72 16 37 H 0.10 0.85 8.09 -2.39 -0.02 0.83 16 38 H 0.07 0.57 7.65 -2.39 -0.02 0.55 16 39 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 41 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 42 H 0.16 2.02 7.46 -2.91 -0.02 2.00 16 43 H 0.10 1.55 8.09 -2.38 -0.02 1.53 16 44 H 0.11 1.13 7.79 -2.39 -0.02 1.11 16 45 H 0.14 3.14 8.14 -2.39 -0.02 3.12 16 46 H 0.12 2.11 7.92 -2.39 -0.02 2.09 16 Total: -1.00 -80.86 379.39 -1.77 -82.63 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.97 Total: 11.36 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 6.63 Total: 4.20 kcal Atomic # 7 Polarization: -97.78 SS G_CDS: -9.76 Total: -107.54 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -1.64 Total: -38.00 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -80.86 -1.77 -82.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272948708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.492 kcal (2) G-P(sol) polarization free energy of solvation -80.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds