Wall clock time and date at job start Sat Apr 11 2020 02:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00088 * 2 1 4 4 H 1.48506 * 109.47103 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47382 * 119.99586 * 3 2 1 6 6 H 1.48496 * 109.47347 * 240.00155 * 3 2 1 7 7 C 1.38813 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99862 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.46885 * 125.58443 * 0.03098 * 9 7 2 11 11 C 1.54059 * 107.71228 * 177.03173 * 10 9 7 12 12 C 1.54071 * 103.73768 * 342.86238 * 11 10 9 13 13 H 1.09001 * 109.15996 * 274.19876 * 12 11 10 14 14 C 1.47662 * 125.58135 * 179.71479 * 9 7 2 15 15 H 1.08994 * 110.57139 * 321.64891 * 14 9 7 16 16 C 1.53522 * 107.66510 * 83.82122 * 14 9 7 17 17 C 1.52937 * 109.71238 * 171.83072 * 16 14 9 18 18 C 1.53047 * 108.49535 * 293.94969 * 17 16 14 19 19 N 1.44192 * 111.76538 * 153.26391 * 12 11 10 20 20 C 1.34778 * 117.76121 * 93.52994 * 19 12 11 21 21 O 1.21585 * 120.00060 * 174.14037 * 20 19 12 22 22 C 1.47510 * 119.99977 * 354.15217 * 20 19 12 23 23 C 1.36824 * 126.94509 * 173.50754 * 22 20 19 24 24 C 1.41257 * 103.85019 * 179.97438 * 23 22 20 25 25 C 1.50697 * 126.70661 * 180.02562 * 24 23 22 26 26 C 1.52995 * 117.49976 * 343.75317 * 25 24 23 27 27 C 1.53002 * 117.50416 * 275.09158 * 25 24 23 28 28 N 1.30131 * 106.59097 * 0.02562 * 24 23 22 29 29 O 1.20895 * 111.97927 * 359.71710 * 28 24 23 30 30 H 0.96996 * 120.00157 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.80795 * 296.57734 * 10 9 7 32 32 H 1.09000 * 109.80838 * 57.47713 * 10 9 7 33 33 H 1.08995 * 110.57076 * 101.42631 * 11 10 9 34 34 H 1.08994 * 110.56707 * 224.30160 * 11 10 9 35 35 H 1.09000 * 109.50140 * 51.72581 * 16 14 9 36 36 H 1.08998 * 109.35896 * 291.84891 * 16 14 9 37 37 H 1.09000 * 109.63486 * 174.24529 * 17 16 14 38 38 H 1.09007 * 109.79862 * 53.75069 * 17 16 14 39 39 H 1.08994 * 109.45923 * 293.77460 * 18 17 16 40 40 H 1.09006 * 109.44140 * 173.81712 * 18 17 16 41 41 H 1.08003 * 128.07728 * 359.97438 * 23 22 20 42 42 H 1.09003 * 115.55102 * 129.42072 * 25 24 23 43 43 H 1.09001 * 117.50281 * 359.97438 * 26 25 24 44 44 H 1.09005 * 117.49750 * 145.01697 * 26 25 24 45 45 H 1.08994 * 117.50357 * 214.98178 * 27 25 24 46 46 H 1.09006 * 117.49419 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1363 -2.5310 -0.0006 11 6 -0.4601 -4.0353 -0.0766 12 6 0.8591 -4.6697 -0.5575 13 1 0.8968 -4.6348 -1.6463 14 6 1.9361 -3.7325 -0.0071 15 1 2.8201 -3.7487 -0.6444 16 6 2.2789 -4.0956 1.4447 17 6 2.7260 -5.5562 1.5194 18 6 1.5336 -6.4477 1.1646 19 7 0.9841 -6.0384 -0.1216 20 6 0.5645 -7.0055 -0.9614 21 8 0.7477 -8.1746 -0.6823 22 6 -0.1169 -6.6455 -2.2192 23 6 -0.4886 -7.4949 -3.2254 24 6 -1.0936 -6.6458 -4.1785 25 6 -1.6903 -7.0559 -5.5001 26 6 -1.3220 -8.4381 -6.0429 27 6 -0.7428 -7.1802 -6.6950 28 7 -1.0349 -5.4401 -3.6923 29 8 -0.5034 -5.4154 -2.6067 30 1 -0.4850 0.8400 0.0004 31 1 -0.5486 -2.1103 0.9165 32 1 -0.5575 -2.0183 -0.8654 33 1 -0.7332 -4.4183 0.9066 34 1 -1.2581 -4.2193 -0.7958 35 1 1.3995 -3.9532 2.0728 36 1 3.0843 -3.4515 1.7977 37 1 3.0658 -5.7841 2.5297 38 1 3.5369 -5.7308 0.8122 39 1 0.7672 -6.3521 1.9338 40 1 1.8614 -7.4856 1.1057 41 1 -0.3515 -8.5649 -3.2785 42 1 -2.6992 -6.6917 -5.6937 43 1 -0.6478 -9.0507 -5.4444 44 1 -2.0886 -8.9831 -6.5940 45 1 -1.1284 -6.8980 -7.6746 46 1 0.3124 -6.9657 -6.5250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049757713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:52:30 Heat of formation + Delta-G solvation = 95.623214 kcal Electronic energy + Delta-G solvation = -29620.719367 eV Core-core repulsion = 25708.868219 eV Total energy + Delta-G solvation = -3911.851149 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.05347 -40.49263 -38.24280 -37.81653 -35.20163 -33.59714 -33.21933 -32.13804 -31.63053 -29.04355 -28.42482 -25.43544 -24.87857 -24.45521 -23.47618 -22.61385 -22.00533 -21.74692 -20.35292 -19.91618 -18.78694 -17.79277 -17.43571 -16.85261 -16.54174 -16.18693 -15.47297 -15.08494 -14.78859 -14.67945 -14.57887 -14.05652 -13.83920 -13.66195 -13.41446 -12.97870 -12.64861 -12.40335 -12.12595 -12.03329 -11.87304 -11.76678 -11.46560 -11.34149 -11.09521 -10.95254 -10.79790 -10.73334 -10.68776 -10.53875 -10.34752 -10.13706 -10.01491 -9.93766 -9.76267 -9.65434 -9.52202 -8.61617 -8.48297 -6.88924 -5.72710 -3.07731 0.78656 1.93392 2.58194 2.92168 3.17439 3.38119 3.39952 3.44440 3.45564 3.82098 4.26335 4.47134 4.51245 4.60441 4.78620 4.82817 4.99807 5.12711 5.16681 5.20109 5.23956 5.30598 5.33640 5.45701 5.50227 5.52480 5.58875 5.71925 5.74255 5.78343 5.80151 5.82753 6.03258 6.09196 6.17870 6.25006 6.28705 6.46230 6.51581 6.67985 6.78441 6.98987 7.29231 7.54502 7.61105 7.81888 7.88794 8.13824 8.23294 9.18987 9.78581 10.42752 11.37989 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012589 B = 0.003938 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.607559 B = 7107.983969 C = 8771.207527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.180 3.820 11 C -0.151 4.151 12 C 0.119 3.881 13 H 0.093 0.907 14 C 0.164 3.836 15 H 0.058 0.942 16 C -0.131 4.131 17 C -0.132 4.132 18 C 0.114 3.886 19 N -0.569 5.569 20 C 0.596 3.404 21 O -0.525 6.525 22 C -0.079 4.079 23 C -0.153 4.153 24 C 0.035 3.965 25 C -0.085 4.085 26 C -0.164 4.164 27 C -0.163 4.163 28 N -0.337 5.337 29 O 0.137 5.863 30 H 0.253 0.747 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.180 0.820 42 H 0.125 0.875 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 -16.812 -6.113 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.056 3.944 11 C -0.191 4.191 12 C 0.014 3.986 13 H 0.111 0.889 14 C 0.055 3.945 15 H 0.075 0.925 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.008 4.008 19 N -0.298 5.298 20 C 0.381 3.619 21 O -0.403 6.403 22 C -0.145 4.145 23 C -0.175 4.175 24 C -0.122 4.122 25 C -0.104 4.104 26 C -0.201 4.201 27 C -0.200 4.200 28 N -0.036 5.036 29 O 0.062 5.938 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.197 0.803 42 H 0.143 0.857 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.457 -15.917 -6.382 17.211 hybrid contribution 0.475 0.296 0.142 0.577 sum -0.983 -15.621 -6.240 16.850 Atomic orbital electron populations 1.69949 1.04856 1.25233 1.56537 1.24788 0.95685 0.97608 1.01984 0.86210 0.78465 0.83236 0.77880 1.21615 1.21190 1.21153 1.18949 0.90389 0.82071 1.44374 0.90431 1.44493 1.01468 0.99135 1.86796 1.21061 0.84243 0.87657 1.01484 1.23077 0.95884 0.99783 1.00341 1.21563 0.98158 0.79388 0.99474 0.88894 1.20957 0.93650 0.85990 0.93915 0.92456 1.22238 1.01702 0.93499 0.99693 1.21860 0.96965 0.96571 1.01635 1.21473 0.96230 0.99840 0.83247 1.47065 1.59394 1.06477 1.16913 1.16789 0.78649 0.85528 0.80890 1.90812 1.57295 1.17788 1.74387 1.24180 1.05632 0.85551 0.99139 1.22702 1.00731 1.02020 0.92062 1.22624 1.02503 0.88766 0.98335 1.20095 0.99835 1.01844 0.88634 1.23062 1.03718 0.90126 1.03211 1.23050 0.99349 1.01329 0.96314 1.73775 1.12250 1.21768 0.95783 1.85366 1.54172 1.28630 1.25591 0.93633 0.93997 0.92711 0.92176 0.91598 0.91746 0.91632 0.90830 0.91634 0.91462 0.89038 0.80257 0.85694 0.88149 0.87711 0.87789 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.37 10.29 55.49 0.57 -25.80 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.13 10.27 -15.06 -0.15 -6.29 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -14.35 2.92 -163.53 -0.48 -14.83 16 10 C 0.18 4.25 5.39 -3.28 -0.02 4.23 16 11 C -0.15 -2.83 6.21 -25.62 -0.16 -2.98 16 12 C 0.12 2.08 2.22 -68.60 -0.15 1.92 16 13 H 0.09 1.70 5.12 -51.93 -0.27 1.43 16 14 C 0.16 3.18 3.34 -67.02 -0.22 2.95 16 15 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 16 C -0.13 -2.22 5.32 -26.49 -0.14 -2.36 16 17 C -0.13 -1.73 6.10 -26.74 -0.16 -1.90 16 18 C 0.11 1.53 6.29 -4.43 -0.03 1.50 16 19 N -0.57 -8.76 2.80 -168.94 -0.47 -9.23 16 20 C 0.60 9.31 7.58 -12.48 -0.09 9.22 16 21 O -0.53 -8.80 16.13 5.29 0.09 -8.72 16 22 C -0.08 -1.19 6.72 -36.32 -0.24 -1.43 16 23 C -0.15 -1.95 10.26 -38.95 -0.40 -2.35 16 24 C 0.04 0.46 6.94 -82.17 -0.57 -0.11 16 25 C -0.09 -0.84 6.33 -91.77 -0.58 -1.42 16 26 C -0.16 -1.19 10.04 -26.70 -0.27 -1.46 16 27 C -0.16 -1.34 10.24 -26.69 -0.27 -1.62 16 28 N -0.34 -5.41 12.04 33.52 0.40 -5.01 16 29 O 0.14 2.24 6.50 15.55 0.10 2.34 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.04 1.09 7.60 -51.93 -0.39 0.69 16 32 H 0.05 1.45 7.25 -51.93 -0.38 1.08 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.19 6.78 -51.93 -0.35 0.84 16 35 H 0.06 1.17 8.02 -51.93 -0.42 0.75 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 1.18 6.91 -51.93 -0.36 0.82 16 41 H 0.18 1.86 7.62 -52.48 -0.40 1.46 16 42 H 0.13 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.10 0.70 7.33 -51.93 -0.38 0.32 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -30.25 364.47 -9.60 -39.85 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.72 Total: 1.52 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.57 Total: -2.30 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.02 Total: -54.87 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: 0.19 Total: -6.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.25 -9.60 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049757713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.476 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds